Python numpy.fft.fftshift() Examples

The following are 30 code examples for showing how to use numpy.fft.fftshift(). These examples are extracted from open source projects. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example.

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Example 1

Project: opticspy Author: Sterncat File: zernike.py License: MIT License

6 votes

def ptf(self):
		"""
		Phase transfer function
		"""
		PSF = self.__psfcaculator__()
		PTF = __fftshift__(__fft2__(PSF))
		PTF = __np__.angle(PTF)
		b = 400
		R = (200)**2
		for i in range(b):
			for j in range(b):
				if (i-b/2)**2+(j-b/2)**2>R:
					PTF[i][j] = 0
		__plt__.imshow(abs(PTF),cmap=__cm__.rainbow)
		__plt__.colorbar()
		__plt__.show()
		return 0

Example 2

Project: aotools Author: AOtools File: phasescreen.py License: GNU Lesser General Public License v3.0

6 votes

def ift2(G, delta_f, FFT=None):
    """
    Wrapper for inverse fourier transform

    Parameters:
        G: data to transform
        delta_f: pixel seperation
        FFT (FFT object, optional): An accelerated FFT object
    """

    N = G.shape[0]

    if FFT:
        g = numpy.fft.fftshift(FFT(numpy.fft.fftshift(G))) * (N * delta_f) ** 2
    else:
        g = fft.ifftshift(fft.ifft2(fft.fftshift(G))) * (N * delta_f) ** 2

    return g

Example 3

Project: aitom Author: xulabs File: util.py License: GNU General Public License v3.0

6 votes

def impute_aligned_vols(t, v, vm, normalize=None):
    assert (normalize is not None)
    if normalize:
        v = ((v - v.mean()) / v.std())
        if (t is not None):
            t = ((t - t.mean()) / t.std())
    if (t is None):
        return v
    t_f = NF.fftshift(NF.fftn(t))
    v_f = NF.fftshift(NF.fftn(v))
    v_f[(vm == 0)] = t_f[(vm == 0)]
    v_f_if = N.real(NF.ifftn(NF.ifftshift(v_f)))
    if normalize:
        v_f_if = ((v_f_if - v_f_if.mean()) / v_f_if.std())
    if N.all(N.isfinite(v_f_if)):
        return v_f_if
    else:
        print('warning: imputation failed')
        return v

Example 4

Project: aitom Author: xulabs File: aligned_refine.py License: GNU General Public License v3.0

6 votes

def average(dj, mask_count_threshold):
    vol_sum = None
    mask_sum = None
    for d in dj:
        v = IF.read_mrc_vol(d['subtomogram'])
        if (not N.all(N.isfinite(v))):
            raise Exception('error loading', d['subtomogram'])
        vm = IF.read_mrc_vol(d['mask'])
        v_r = GR.rotate_pad_mean(v, angle=d['angle'], loc_r=d['loc'])
        assert N.all(N.isfinite(v_r))
        vm_r = GR.rotate_mask(vm, angle=d['angle'])
        assert N.all(N.isfinite(vm_r))
        if (vol_sum is None):
            vol_sum = N.zeros(v_r.shape, dtype=N.float64, order='F')
        vol_sum += v_r
        if (mask_sum is None):
            mask_sum = N.zeros(vm_r.shape, dtype=N.float64, order='F')
        mask_sum += vm_r
    ind = (mask_sum >= mask_count_threshold)
    vol_sum_fft = NF.fftshift(NF.fftn(vol_sum))
    avg = N.zeros(vol_sum_fft.shape, dtype=N.complex)
    avg[ind] = (vol_sum_fft[ind] / mask_sum[ind])
    avg = N.real(NF.ifftn(NF.ifftshift(avg)))
    return {'v': avg, 'm': (mask_sum / len(dj)), }

Example 5

Project: recruit Author: Frank-qlu File: test_helper.py License: Apache License 2.0

5 votes

def test_definition(self):
        x = [0, 1, 2, 3, 4, -4, -3, -2, -1]
        y = [-4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)
        x = [0, 1, 2, 3, 4, -5, -4, -3, -2, -1]
        y = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)

Example 6

Project: recruit Author: Frank-qlu File: test_helper.py License: Apache License 2.0

5 votes

def test_inverse(self):
        for n in [1, 4, 9, 100, 211]:
            x = np.random.random((n,))
            assert_array_almost_equal(fft.ifftshift(fft.fftshift(x)), x)

Example 7

Project: recruit Author: Frank-qlu File: test_helper.py License: Apache License 2.0

5 votes

def test_axes_keyword(self):
        freqs = [[0, 1, 2], [3, 4, -4], [-3, -2, -1]]
        shifted = [[-1, -3, -2], [2, 0, 1], [-4, 3, 4]]
        assert_array_almost_equal(fft.fftshift(freqs, axes=(0, 1)), shifted)
        assert_array_almost_equal(fft.fftshift(freqs, axes=0),
                                  fft.fftshift(freqs, axes=(0,)))
        assert_array_almost_equal(fft.ifftshift(shifted, axes=(0, 1)), freqs)
        assert_array_almost_equal(fft.ifftshift(shifted, axes=0),
                                  fft.ifftshift(shifted, axes=(0,)))

        assert_array_almost_equal(fft.fftshift(freqs), shifted)
        assert_array_almost_equal(fft.ifftshift(shifted), freqs)

Example 8

Project: lambda-packs Author: ryfeus File: test_helper.py License: MIT License

5 votes

def test_definition(self):
        x = [0, 1, 2, 3, 4, -4, -3, -2, -1]
        y = [-4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)
        x = [0, 1, 2, 3, 4, -5, -4, -3, -2, -1]
        y = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)

Example 9

Project: lambda-packs Author: ryfeus File: test_helper.py License: MIT License

5 votes

def test_inverse(self):
        for n in [1, 4, 9, 100, 211]:
            x = np.random.random((n,))
            assert_array_almost_equal(fft.ifftshift(fft.fftshift(x)), x)

Example 10

Project: lambda-packs Author: ryfeus File: test_helper.py License: MIT License

5 votes

def test_axes_keyword(self):
        freqs = [[0, 1, 2], [3, 4, -4], [-3, -2, -1]]
        shifted = [[-1, -3, -2], [2, 0, 1], [-4, 3, 4]]
        assert_array_almost_equal(fft.fftshift(freqs, axes=(0, 1)), shifted)
        assert_array_almost_equal(fft.fftshift(freqs, axes=0),
                fft.fftshift(freqs, axes=(0,)))
        assert_array_almost_equal(fft.ifftshift(shifted, axes=(0, 1)), freqs)
        assert_array_almost_equal(fft.ifftshift(shifted, axes=0),
                fft.ifftshift(shifted, axes=(0,)))

Example 11

Project: auto-alt-text-lambda-api Author: abhisuri97 File: test_helper.py License: MIT License

5 votes

def test_definition(self):
        x = [0, 1, 2, 3, 4, -4, -3, -2, -1]
        y = [-4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)
        x = [0, 1, 2, 3, 4, -5, -4, -3, -2, -1]
        y = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)

Example 12

Project: auto-alt-text-lambda-api Author: abhisuri97 File: test_helper.py License: MIT License

5 votes

def test_inverse(self):
        for n in [1, 4, 9, 100, 211]:
            x = np.random.random((n,))
            assert_array_almost_equal(fft.ifftshift(fft.fftshift(x)), x)

Example 13

Project: auto-alt-text-lambda-api Author: abhisuri97 File: test_helper.py License: MIT License

5 votes

def test_axes_keyword(self):
        freqs = [[0, 1, 2], [3, 4, -4], [-3, -2, -1]]
        shifted = [[-1, -3, -2], [2, 0, 1], [-4, 3, 4]]
        assert_array_almost_equal(fft.fftshift(freqs, axes=(0, 1)), shifted)
        assert_array_almost_equal(fft.fftshift(freqs, axes=0),
                fft.fftshift(freqs, axes=(0,)))
        assert_array_almost_equal(fft.ifftshift(shifted, axes=(0, 1)), freqs)
        assert_array_almost_equal(fft.ifftshift(shifted, axes=0),
                fft.ifftshift(shifted, axes=(0,)))

Example 14

Project: vnpy_crypto Author: birforce File: test_helper.py License: MIT License

5 votes

def test_definition(self):
        x = [0, 1, 2, 3, 4, -4, -3, -2, -1]
        y = [-4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)
        x = [0, 1, 2, 3, 4, -5, -4, -3, -2, -1]
        y = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)

Example 15

Project: vnpy_crypto Author: birforce File: test_helper.py License: MIT License

5 votes

def test_inverse(self):
        for n in [1, 4, 9, 100, 211]:
            x = np.random.random((n,))
            assert_array_almost_equal(fft.ifftshift(fft.fftshift(x)), x)

Example 16

Project: vnpy_crypto Author: birforce File: test_helper.py License: MIT License

5 votes

def test_axes_keyword(self):
        freqs = [[0, 1, 2], [3, 4, -4], [-3, -2, -1]]
        shifted = [[-1, -3, -2], [2, 0, 1], [-4, 3, 4]]
        assert_array_almost_equal(fft.fftshift(freqs, axes=(0, 1)), shifted)
        assert_array_almost_equal(fft.fftshift(freqs, axes=0),
                fft.fftshift(freqs, axes=(0,)))
        assert_array_almost_equal(fft.ifftshift(shifted, axes=(0, 1)), freqs)
        assert_array_almost_equal(fft.ifftshift(shifted, axes=0),
                fft.ifftshift(shifted, axes=(0,)))

Example 17

Project: Computable Author: ktraunmueller File: test_helper.py License: MIT License

5 votes

def test_definition(self):
        x = [0, 1, 2, 3, 4, -4, -3, -2, -1]
        y = [-4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)
        x = [0, 1, 2, 3, 4, -5, -4, -3, -2, -1]
        y = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)

Example 18

Project: Computable Author: ktraunmueller File: test_helper.py License: MIT License

5 votes

def test_inverse(self):
        for n in [1, 4, 9, 100, 211]:
            x = np.random.random((n,))
            assert_array_almost_equal(fft.ifftshift(fft.fftshift(x)), x)

Example 19

Project: Computable Author: ktraunmueller File: test_helper.py License: MIT License

5 votes

def test_axes_keyword(self):
        freqs = [[ 0,  1,  2], [ 3,  4, -4], [-3, -2, -1]]
        shifted = [[-1, -3, -2], [ 2,  0,  1], [-4,  3,  4]]
        assert_array_almost_equal(fft.fftshift(freqs, axes=(0, 1)), shifted)
        assert_array_almost_equal(fft.fftshift(freqs, axes=0),
                fft.fftshift(freqs, axes=(0,)))
        assert_array_almost_equal(fft.ifftshift(shifted, axes=(0, 1)), freqs)
        assert_array_almost_equal(fft.ifftshift(shifted, axes=0),
                fft.ifftshift(shifted, axes=(0,)))

Example 20

Project: Mastering-Elasticsearch-7.0 Author: PacktPublishing File: test_helper.py License: MIT License

5 votes

def test_definition(self):
        x = [0, 1, 2, 3, 4, -4, -3, -2, -1]
        y = [-4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)
        x = [0, 1, 2, 3, 4, -5, -4, -3, -2, -1]
        y = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)

Example 21

Project: Mastering-Elasticsearch-7.0 Author: PacktPublishing File: test_helper.py License: MIT License

5 votes

def test_inverse(self):
        for n in [1, 4, 9, 100, 211]:
            x = np.random.random((n,))
            assert_array_almost_equal(fft.ifftshift(fft.fftshift(x)), x)

Example 22

Project: Mastering-Elasticsearch-7.0 Author: PacktPublishing File: test_helper.py License: MIT License

5 votes

def test_axes_keyword(self):
        freqs = [[0, 1, 2], [3, 4, -4], [-3, -2, -1]]
        shifted = [[-1, -3, -2], [2, 0, 1], [-4, 3, 4]]
        assert_array_almost_equal(fft.fftshift(freqs, axes=(0, 1)), shifted)
        assert_array_almost_equal(fft.fftshift(freqs, axes=0),
                                  fft.fftshift(freqs, axes=(0,)))
        assert_array_almost_equal(fft.ifftshift(shifted, axes=(0, 1)), freqs)
        assert_array_almost_equal(fft.ifftshift(shifted, axes=0),
                                  fft.ifftshift(shifted, axes=(0,)))

        assert_array_almost_equal(fft.fftshift(freqs), shifted)
        assert_array_almost_equal(fft.ifftshift(shifted), freqs)

Example 23

Project: GraphicDesignPatternByPython Author: Relph1119 File: test_helper.py License: MIT License

5 votes

def test_definition(self):
        x = [0, 1, 2, 3, 4, -4, -3, -2, -1]
        y = [-4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)
        x = [0, 1, 2, 3, 4, -5, -4, -3, -2, -1]
        y = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4]
        assert_array_almost_equal(fft.fftshift(x), y)
        assert_array_almost_equal(fft.ifftshift(y), x)

Example 24

Project: GraphicDesignPatternByPython Author: Relph1119 File: test_helper.py License: MIT License

5 votes

def test_inverse(self):
        for n in [1, 4, 9, 100, 211]:
            x = np.random.random((n,))
            assert_array_almost_equal(fft.ifftshift(fft.fftshift(x)), x)

Example 25

Project: GraphicDesignPatternByPython Author: Relph1119 File: test_helper.py License: MIT License

5 votes

def test_axes_keyword(self):
        freqs = [[0, 1, 2], [3, 4, -4], [-3, -2, -1]]
        shifted = [[-1, -3, -2], [2, 0, 1], [-4, 3, 4]]
        assert_array_almost_equal(fft.fftshift(freqs, axes=(0, 1)), shifted)
        assert_array_almost_equal(fft.fftshift(freqs, axes=0),
                                  fft.fftshift(freqs, axes=(0,)))
        assert_array_almost_equal(fft.ifftshift(shifted, axes=(0, 1)), freqs)
        assert_array_almost_equal(fft.ifftshift(shifted, axes=0),
                                  fft.ifftshift(shifted, axes=(0,)))

        assert_array_almost_equal(fft.fftshift(freqs), shifted)
        assert_array_almost_equal(fft.ifftshift(shifted), freqs)

Example 26

Project: lie_learn Author: AMLab-Amsterdam File: T1FFT.py License: MIT License

5 votes

def analyze(f, axis=0):
        """
        Compute the Fourier Transform of the discretely sampled function f : T^1 -> C.

        Let f : T^1 -> C be a band-limited function on the circle.
        The samples f(theta_k) correspond to points on a regular grid on the circle, as returned by spaces.T1.linspace:
        theta_k = 2 pi k / N
        for k = 0, ..., N - 1

        This function computes
        \hat{f}_n = (1/N) \sum_{k=0}^{N-1} f(theta_k) e^{-i n theta_k}
        which, if f has band-limit less than N, is equal to:
        \hat{f}_n = \int_0^{2pi} f(theta) e^{-i n theta} dtheta / 2pi,
                  = <f(theta), e^{i n theta}>
        where dtheta / 2pi is the normalized Haar measure on T^1, and < , > denotes the inner product on Hilbert space,
        with respect to which this transform is unitary.

        The range of frequencies n is -floor(N/2) <= n <= ceil(N/2) - 1

        :param f:
        :param axis:
        :return:
        """
        # The numpy FFT returns coefficients in a different order than we want them,
        # and using a different normalization.
        fhat = fft(f, axis=axis)
        fhat = fftshift(fhat, axes=axis)
        return fhat / f.shape[axis]

Example 27

Project: lie_learn Author: AMLab-Amsterdam File: T1FFT.py License: MIT License

5 votes

def analyze_naive(f):
        f_hat = np.zeros_like(f)
        for n in range(f.size):
            for k in range(f.size):
                theta_k = k * 2 * np.pi / f.size
                f_hat[n] += f[k] * np.exp(-1j * n * theta_k)
        return fftshift(f_hat / f.size, axes=0)

Example 28

Project: lie_learn Author: AMLab-Amsterdam File: T2FFT.py License: MIT License

5 votes

def analyze(f, axes=(0, 1)):
        """
        Compute the Fourier Transform of the discretely sampled function f : T^2 -> C.

        Let f : T^2 -> C be a band-limited function on the torus.
        The samples f(theta_k, phi_l) correspond to points on a regular grid on the circle,
        as returned by spaces.T1.linspace:
        theta_k = phi_k = 2 pi k / N
        for k = 0, ..., N - 1 and l = 0, ..., N - 1

        This function computes
        \hat{f}_n = (1/N) \sum_{k=0}^{N-1} f(theta_k) e^{-i n theta_k}
        which, if f has band-limit less than N, is equal to:
        \hat{f}_n = \int_0^{2pi} f(theta) e^{-i n theta} dtheta / 2pi,
                  = <f(theta), e^{i n theta}>
        where dtheta / 2pi is the normalized Haar measure on T^1, and < , > denotes the inner product on Hilbert space,
        with respect to which this transform is unitary.

        The range of frequencies n is -floor(N/2) <= n <= ceil(N/2) - 1

        :param f:
        :param axis:
        :return:
        """
        # The numpy FFT returns coefficients in a different order than we want them,
        # and using a different normalization.
        f_hat = fft2(f, axes=axes)
        f_hat = fftshift(f_hat, axes=axes)
        size = np.prod([f.shape[ax] for ax in axes])
        return f_hat / size

Example 29

Project: opticspy Author: Sterncat File: zernike_rec.py License: MIT License

5 votes

def __psfcaculator__(self,lambda_1=632*10**(-9),z=0.1):
		"""
		height: Exit pupil height
		width: Exit pupil width
		z: Distance from exit pupil to image plane
		"""
		a = self.__a__
		b = __sqrt__(1-a**2)
		l1 = 100;
		x1 = __np__.linspace(-a, a, l1)
		y1 = __np__.linspace(-b, b, l1)
		[X,Y] = __np__.meshgrid(x1,y1)
		Z = __zernikecartesian__(self.__coefficients__,a,X,Y)
		d = 400 # background
		A = __np__.zeros([d,d])
		A[d//2-l1//2+1:d//2+l1//2+1,d//2-l1//2+1:d//2+l1//2+1] = Z
		# fig = __plt__.figure()
		# __plt__.imshow(A)
		# __plt__.colorbar()
		# __plt__.show()
		abbe = __np__.exp(-1j*2*__np__.pi*A)
		for i in range(len(abbe)):
			for j in range(len(abbe)):
				if abbe[i][j]==1:
					abbe[i][j]=0
		PSF = __fftshift__(__fft2__(__fftshift__(abbe)))**2
		PSF = PSF/PSF.max()
		return PSF

Example 30

Project: opticspy Author: Sterncat File: zernike_rec.py License: MIT License

5 votes

def mtf(self,lambda_1=632*10**(-9),z=0.1,matrix = False):
		"""
		Modulate Transfer function
		"""
		PSF = self.__psfcaculator__(lambda_1=lambda_1,z=z)
		MTF = __fftshift__(__fft2__(PSF))
		MTF = MTF/MTF.max()
		fig = __plt__.figure(figsize=(9, 6), dpi=80)
		__plt__.imshow(abs(MTF),cmap=__cm__.bwr)
		__plt__.colorbar()
		__plt__.show()
		if matrix == True:
			return MTF
		else:
			return 0