Python theano.clone() Examples
The following are 30
code examples of theano.clone().
You can vote up the ones you like or vote down the ones you don't like,
and go to the original project or source file by following the links above each example.
You may also want to check out all available functions/classes of the module
theano
, or try the search function
.
Example #1
Source File: utils.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 6 votes |
def deep_clone(output, replace, **kwargs): """ like theano.clone, but makes sure to replace in the default_update of shared variables as well """ new_output = list(output) default_update_idxs = [] for idx, v in enumerate(theano.gof.graph.inputs(output)): if hasattr(v, "default_update"): new_output.append(v.default_update) default_update_idxs.append(idx) cloned = theano.clone(new_output, replace, **kwargs) cloned_output = cloned[:len(output)] cloned_default_updates = cloned[len(output):] assert len(cloned_default_updates) == len(default_update_idxs) cloned_inputs = theano.gof.graph.inputs(cloned_output) for idx, update in zip(default_update_idxs, cloned_default_updates): v = cloned_inputs[idx] assert hasattr(v, "default_update") v.default_update = update return cloned_output
Example #2
Source File: utils.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 6 votes |
def deep_clone(output, replace, **kwargs): """ like theano.clone, but makes sure to replace in the default_update of shared variables as well """ new_output = list(output) default_update_idxs = [] for idx, v in enumerate(theano.gof.graph.inputs(output)): if hasattr(v, "default_update"): new_output.append(v.default_update) default_update_idxs.append(idx) cloned = theano.clone(new_output, replace, **kwargs) cloned_output = cloned[:len(output)] cloned_default_updates = cloned[len(output):] assert len(cloned_default_updates) == len(default_update_idxs) cloned_inputs = theano.gof.graph.inputs(cloned_output) for idx, update in zip(default_update_idxs, cloned_default_updates): v = cloned_inputs[idx] assert hasattr(v, "default_update") v.default_update = update return cloned_output
Example #3
Source File: scan_utils.py From D-VAE with MIT License | 6 votes |
def reconstruct_graph(inputs, outputs, tag=None): """ Different interface to clone, that allows you to pass inputs. Compared to clone, this method always replaces the inputs with new variables of the same type, and returns those (in the same order as the original inputs). """ if tag is None: tag = '' nw_inputs = [safe_new(x, tag) for x in inputs] givens = OrderedDict() for nw_x, x in izip(nw_inputs, inputs): givens[x] = nw_x allinputs = theano.gof.graph.inputs(outputs) for inp in allinputs: if isinstance(inp, theano.Constant): givens[inp] = inp.clone() nw_outputs = clone(outputs, replace=givens) return (nw_inputs, nw_outputs)
Example #4
Source File: test_elemwise.py From D-VAE with MIT License | 6 votes |
def test_gt_grad(): """A user test that failed. Something about it made Elemwise.grad return something that was too complicated for get_scalar_constant_value to recognize as being 0, so gradient.grad reported that it was not a valid gradient of an integer. """ floatX = config.floatX T = theano.tensor input_ = T.vector(dtype=floatX) random_values = numpy.random.RandomState(1234).uniform( low=-1, high=1, size=(2, 2)) W_values = numpy.asarray(random_values, dtype=floatX) W = theano.shared(value=W_values, name='weights') correct_score = T.dot(input_, W) wrong_input = T.vector(dtype=floatX) wrong_score = theano.clone(correct_score, {input_: wrong_input}) # Hinge loss scores = T.ones_like(correct_score) - correct_score + wrong_score cost = (scores * (scores > 0)).sum() T.grad(cost, input_)
Example #5
Source File: builders.py From D-VAE with MIT License | 6 votes |
def infer_shape(self, node, shapes): out_shp = theano.scan_module.scan_utils.infer_shape(self.new_outputs, self.new_inputs, shapes) # Clone the output shape so that shape are computed from outer inputs. # Note: # Here we can do it more simply like: # ret = [theano.clone(shp, replace=repl) for shp in out_shp] # But doing it multiple time could duplicate common subgraph between # each shape call. Theano optimizer will clean this up later, but this # will ask extra work to the optimizer. repl = dict(zip(self.new_inputs, node.inputs)) cloned = theano.clone(reduce(tuple.__add__, out_shp), replace=repl) ret = [] used = 0 for i in range(len(out_shp)): nb = len(out_shp[i]) ret.append(cloned[used: used + nb]) used += nb return ret
Example #6
Source File: servoing_policy_network.py From visual_dynamics with MIT License | 6 votes |
def __init__(self, incoming, servoing_pol, **kwargs): assert isinstance(servoing_pol, TheanoServoingPolicy) super(TheanoServoingPolicyLayer, self).__init__(incoming, **kwargs) assert len(self.input_shape) == 4 and self.input_shape[1] == 6 self.action_space = servoing_pol.action_space self.sqrt_w_var = self.add_param(np.sqrt(servoing_pol.w).astype(theano.config.floatX), servoing_pol.w.shape, name='sqrt_w') self.sqrt_lambda_var = self.add_param(np.sqrt(servoing_pol.lambda_).astype(theano.config.floatX), servoing_pol.lambda_.shape, name='sqrt_lambda') self.w_var = self.sqrt_w_var ** 2 self.lambda_var = self.sqrt_lambda_var ** 2 self.X_var, U_var, self.X_target_var, self.U_lin_var, alpha_var = servoing_pol.input_vars w_var, lambda_var = servoing_pol.param_vars pi_var = servoing_pol._get_pi_var() self.pi_var = theano.clone(pi_var, replace={w_var: self.w_var, lambda_var: self.lambda_var, alpha_var: np.array(servoing_pol.alpha, dtype=theano.config.floatX)})
Example #7
Source File: servoing_policy.py From visual_dynamics with MIT License | 6 votes |
def _get_jac_vars(self): if not self.predictor.feature_jacobian_name: raise NotImplementedError X_var, U_var, X_target_var, U_lin_var, alpha_var = self.input_vars names = [self.predictor.feature_name, self.predictor.feature_jacobian_name, self.predictor.next_feature_name] vars_ = L.get_output([self.predictor.pred_layers[name] for name in iter_util.flatten_tree(names)], deterministic=True) feature_vars, jac_vars, next_feature_vars = iter_util.unflatten_tree(names, vars_) y_vars = [T.flatten(feature_var, outdim=2) for feature_var in feature_vars] y_target_vars = [theano.clone(y_var, replace={X_var: X_target_var}) for y_var in y_vars] y_target_vars = [theano.ifelse.ifelse(T.eq(alpha_var, 1.0), y_target_var, alpha_var * y_target_var + (1 - alpha_var) * y_var) for (y_var, y_target_var) in zip(y_vars, y_target_vars)] jac_vars = [theano.clone(jac_var, replace={U_var: U_lin_var}) for jac_var in jac_vars] return jac_vars
Example #8
Source File: servoing_policy.py From visual_dynamics with MIT License | 6 votes |
def _get_jac_z_vars(self): if not self.predictor.feature_jacobian_name: raise NotImplementedError X_var, U_var, X_target_var, U_lin_var, alpha_var = self.input_vars names = [self.predictor.feature_name, self.predictor.feature_jacobian_name, self.predictor.next_feature_name] vars_ = L.get_output([self.predictor.pred_layers[name] for name in iter_util.flatten_tree(names)], deterministic=True) feature_vars, jac_vars, next_feature_vars = iter_util.unflatten_tree(names, vars_) y_vars = [T.flatten(feature_var, outdim=2) for feature_var in feature_vars] y_target_vars = [theano.clone(y_var, replace={X_var: X_target_var}) for y_var in y_vars] y_target_vars = [theano.ifelse.ifelse(T.eq(alpha_var, 1.0), y_target_var, alpha_var * y_target_var + (1 - alpha_var) * y_var) for (y_var, y_target_var) in zip(y_vars, y_target_vars)] jac_vars = [theano.clone(jac_var, replace={U_var: U_lin_var}) for jac_var in jac_vars] y_next_pred_vars = [T.flatten(next_feature_var, outdim=2) for next_feature_var in next_feature_vars] y_next_pred_vars = [theano.clone(y_next_pred_var, replace={U_var: U_lin_var}) for y_next_pred_var in y_next_pred_vars] z_vars = [y_target_var - y_next_pred_var + T.batched_tensordot(jac_var, U_lin_var, axes=(2, 1)) for (y_target_var, y_next_pred_var, jac_var) in zip(y_target_vars, y_next_pred_vars, jac_vars)] return jac_vars, z_vars
Example #9
Source File: utils.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 6 votes |
def deep_clone(output, replace, **kwargs): """ like theano.clone, but makes sure to replace in the default_update of shared variables as well """ new_output = list(output) default_update_idxs = [] for idx, v in enumerate(theano.gof.graph.inputs(output)): if hasattr(v, "default_update"): new_output.append(v.default_update) default_update_idxs.append(idx) cloned = theano.clone(new_output, replace, **kwargs) cloned_output = cloned[:len(output)] cloned_default_updates = cloned[len(output):] assert len(cloned_default_updates) == len(default_update_idxs) cloned_inputs = theano.gof.graph.inputs(cloned_output) for idx, update in zip(default_update_idxs, cloned_default_updates): v = cloned_inputs[idx] assert hasattr(v, "default_update") v.default_update = update return cloned_output
Example #10
Source File: test_elemwise.py From attention-lvcsr with MIT License | 6 votes |
def test_gt_grad(): """A user test that failed. Something about it made Elemwise.grad return something that was too complicated for get_scalar_constant_value to recognize as being 0, so gradient.grad reported that it was not a valid gradient of an integer. """ floatX = config.floatX T = theano.tensor input_ = T.vector(dtype=floatX) random_values = numpy.random.RandomState(1234).uniform( low=-1, high=1, size=(2, 2)) W_values = numpy.asarray(random_values, dtype=floatX) W = theano.shared(value=W_values, name='weights') correct_score = T.dot(input_, W) wrong_input = T.vector(dtype=floatX) wrong_score = theano.clone(correct_score, {input_: wrong_input}) # Hinge loss scores = T.ones_like(correct_score) - correct_score + wrong_score cost = (scores * (scores > 0)).sum() T.grad(cost, input_)
Example #11
Source File: builders.py From attention-lvcsr with MIT License | 6 votes |
def infer_shape(self, node, shapes): out_shp = theano.scan_module.scan_utils.infer_shape(self.new_outputs, self.new_inputs, shapes) # Clone the output shape so that shape are computed from outer inputs. # Note: # Here we can do it more simply like: # ret = [theano.clone(shp, replace=repl) for shp in out_shp] # But doing it multiple time could duplicate common subgraph between # each shape call. Theano optimizer will clean this up later, but this # will ask extra work to the optimizer. repl = dict(zip(self.new_inputs, node.inputs)) cloned = theano.clone(reduce(tuple.__add__, out_shp), replace=repl) ret = [] used = 0 for i in range(len(out_shp)): nb = len(out_shp[i]) ret.append(cloned[used: used + nb]) used += nb return ret
Example #12
Source File: scan_utils.py From attention-lvcsr with MIT License | 6 votes |
def reconstruct_graph(inputs, outputs, tag=None): """ Different interface to clone, that allows you to pass inputs. Compared to clone, this method always replaces the inputs with new variables of the same type, and returns those (in the same order as the original inputs). """ if tag is None: tag = '' nw_inputs = [safe_new(x, tag) for x in inputs] givens = OrderedDict() for nw_x, x in izip(nw_inputs, inputs): givens[x] = nw_x allinputs = theano.gof.graph.inputs(outputs) for inp in allinputs: if isinstance(inp, theano.Constant): givens[inp] = inp.clone() nw_outputs = clone(outputs, replace=givens) return (nw_inputs, nw_outputs)
Example #13
Source File: utils.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 6 votes |
def deep_clone(output, replace, **kwargs): """ like theano.clone, but makes sure to replace in the default_update of shared variables as well """ new_output = list(output) default_update_idxs = [] for idx, v in enumerate(theano.gof.graph.inputs(output)): if hasattr(v, "default_update"): new_output.append(v.default_update) default_update_idxs.append(idx) cloned = theano.clone(new_output, replace, **kwargs) cloned_output = cloned[:len(output)] cloned_default_updates = cloned[len(output):] assert len(cloned_default_updates) == len(default_update_idxs) cloned_inputs = theano.gof.graph.inputs(cloned_output) for idx, update in zip(default_update_idxs, cloned_default_updates): v = cloned_inputs[idx] assert hasattr(v, "default_update") v.default_update = update return cloned_output
Example #14
Source File: utils.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 6 votes |
def deep_clone(output, replace, **kwargs): """ like theano.clone, but makes sure to replace in the default_update of shared variables as well """ new_output = list(output) default_update_idxs = [] for idx, v in enumerate(theano.gof.graph.inputs(output)): if hasattr(v, "default_update"): new_output.append(v.default_update) default_update_idxs.append(idx) cloned = theano.clone(new_output, replace, **kwargs) cloned_output = cloned[:len(output)] cloned_default_updates = cloned[len(output):] assert len(cloned_default_updates) == len(default_update_idxs) cloned_inputs = theano.gof.graph.inputs(cloned_output) for idx, update in zip(default_update_idxs, cloned_default_updates): v = cloned_inputs[idx] assert hasattr(v, "default_update") v.default_update = update return cloned_output
Example #15
Source File: REINFORCE.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, mu_vw, sigma_vw): deterministic = network.find_hyperparameter(["deterministic"], False) if deterministic: res = mu_vw.variable else: # TODO look at shape of both mu and sigma shape = mu_vw.shape if any(s is None for s in shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for random number shape, " "which can be an issue with theano.clone") shape = mu_vw.variable.shape # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() res = srng.normal(shape, avg=mu_vw.variable, std=sigma_vw.variable, dtype=fX) network.create_vw( "default", variable=theano.gradient.disconnected_grad(res), shape=mu_vw.shape, tags={"output"}, )
Example #16
Source File: stochastic.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, in_vw): deterministic = network.find_hyperparameter(["deterministic"]) p = network.find_hyperparameter(["dropout_probability", "probability", "p"], 0) if deterministic or p == 0: network.copy_vw( name="default", previous_vw=in_vw, tags={"output"}, ) else: rescale_factor = 1 / (1 - p) mask_shape = in_vw.shape if any(s is None for s in mask_shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for dropout mask, " "which can be an issue with theano.clone") mask_shape = in_vw.symbolic_shape() # FIXME generalize to other shape dimensions. # assume this is of the form bc01 (batch, channel, width, height) mask_shape = mask_shape[:2] # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() # set bernoulli probability to be inverse of dropout probability # because 1 means to keep the unit bernoulli_prob = 1 - p mask = rescale_factor * srng.binomial(mask_shape, p=bernoulli_prob, dtype=fX) mask = mask.dimshuffle(0, 1, 'x', 'x') network.create_vw( "default", variable=in_vw.variable * mask, shape=in_vw.shape, tags={"output"}, )
Example #17
Source File: stochastic.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, in_vw): deterministic = network.find_hyperparameter(["deterministic"]) p = network.find_hyperparameter(["dropout_probability", "probability", "p"], 0) if deterministic or p == 0: network.copy_vw( name="default", previous_vw=in_vw, tags={"output"}, ) else: rescale_factor = 1 / (1 - p) mask_shape = in_vw.shape if any(s is None for s in mask_shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for dropout mask, " "which can be an issue with theano.clone") mask_shape = in_vw.variable.shape # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() # set bernoulli probability to be inverse of dropout probability # because 1 means to keep the unit bernoulli_prob = 1 - p mask = rescale_factor * srng.binomial(mask_shape, p=bernoulli_prob, dtype=fX) network.create_vw( "default", variable=in_vw.variable * mask, shape=in_vw.shape, tags={"output"}, )
Example #18
Source File: stochastic.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, in_vw): deterministic = network.find_hyperparameter(["deterministic"]) sigma = network.find_hyperparameter(["sigma"], None) if sigma is None: p = network.find_hyperparameter(["dropout_probability", "probability", "p"], 0) if p == 0: sigma = 0 else: # derive gaussian dropout variance from bernoulli dropout # probability sigma = T.sqrt(p / (1 - p)) if deterministic or sigma == 0: network.copy_vw( name="default", previous_vw=in_vw, tags={"output"}, ) else: mask_shape = in_vw.shape if any(s is None for s in mask_shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for dropout mask, " "which can be an issue with theano.clone") mask_shape = in_vw.variable.shape # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() mask = srng.normal(mask_shape, avg=1.0, std=sigma, dtype=fX) network.create_vw( "default", variable=in_vw.variable * mask, shape=in_vw.shape, tags={"output"}, )
Example #19
Source File: batch_norms.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def get_output_for(self, input, deterministic=False, **kwargs): beta = self.beta; if not deterministic: self_beta = theano.clone(self.beta, share_inputs=False); input_beta = ttt.percentile(input, self.perc); self_beta.default_update = ((1 - self.alpha) * self_beta + self.alpha * input_beta); beta += 0 * self_beta; # thresholding return theano.tensor.nnet.sigmoid(self.tight*(input-beta+self.bias));
Example #20
Source File: batch_norms.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def get_output_for(self, input, deterministic=False, **kwargs): beta = self.beta; if not deterministic: self_beta = theano.clone(self.beta, share_inputs=False); input_beta = ttt.percentile(input, self.perc); self_beta.default_update = ((1 - self.alpha) * self_beta + self.alpha * input_beta); beta += 0 * self_beta; # thresholding return theano.tensor.nnet.sigmoid(self.tight*(input-beta+self.bias));
Example #21
Source File: batch_norms.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def get_output_for(self, input, deterministic=False, **kwargs): beta = self.beta; if not deterministic: self_beta = theano.clone(self.beta, share_inputs=False); input_beta = ttt.percentile(input, self.perc); self_beta.default_update = ((1 - self.alpha) * self_beta + self.alpha * input_beta); beta += 0 * self_beta; # thresholding return theano.tensor.nnet.relu(input-beta, 0.0);
Example #22
Source File: utils_test.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def test_clone(): """ NOTE: if this test eventually passes (eg. theano fixes the issue), deep_clone may no longer be necessary """ _clone_test_case(theano.clone)
Example #23
Source File: dNDF.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, in_vw): axis = network.find_hyperparameter(["axis"]) deterministic = network.find_hyperparameter(["deterministic"], False) # calculate output shape output_shape = list(in_vw.shape) output_shape.pop(axis) if deterministic: out_var = in_vw.variable.mean(axis=axis) else: # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() if in_vw.shape[axis] is None: # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for random variable size " "which can be an issue with theano.clone") idx = T.argmax(srng.normal([in_vw.symbolic_shape()[axis]])) slices = tuple([slice(None) for _ in range(axis)] + [idx]) out_var = in_vw.variable[slices] network.create_vw( "default", variable=out_var, shape=tuple(output_shape), tags={"output"}, )
Example #24
Source File: REINFORCE.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, mu_vw, sigma_vw): deterministic = network.find_hyperparameter(["deterministic"], False) if deterministic: res = mu_vw.variable else: # TODO look at shape of both mu and sigma shape = mu_vw.shape if any(s is None for s in shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for random number shape, " "which can be an issue with theano.clone") shape = mu_vw.variable.shape # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() res = srng.normal(shape, avg=mu_vw.variable, std=sigma_vw.variable, dtype=fX) network.create_vw( "default", variable=theano.gradient.disconnected_grad(res), shape=mu_vw.shape, tags={"output"}, )
Example #25
Source File: stochastic.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, in_vw): deterministic = network.find_hyperparameter(["deterministic"]) p = network.find_hyperparameter(["dropout_probability", "probability", "p"], 0) if deterministic or p == 0: network.copy_vw( name="default", previous_vw=in_vw, tags={"output"}, ) else: rescale_factor = 1 / (1 - p) mask_shape = in_vw.shape if any(s is None for s in mask_shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for dropout mask, " "which can be an issue with theano.clone") mask_shape = in_vw.symbolic_shape() # FIXME generalize to other shape dimensions. # assume this is of the form bc01 (batch, channel, width, height) mask_shape = mask_shape[:2] # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() # set bernoulli probability to be inverse of dropout probability # because 1 means to keep the unit bernoulli_prob = 1 - p mask = rescale_factor * srng.binomial(mask_shape, p=bernoulli_prob, dtype=fX) mask = mask.dimshuffle(0, 1, 'x', 'x') network.create_vw( "default", variable=in_vw.variable * mask, shape=in_vw.shape, tags={"output"}, )
Example #26
Source File: stochastic.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, in_vw): deterministic = network.find_hyperparameter(["deterministic"]) p = network.find_hyperparameter(["dropout_probability", "probability", "p"], 0) if deterministic or p == 0: network.copy_vw( name="default", previous_vw=in_vw, tags={"output"}, ) else: rescale_factor = 1 / (1 - p) mask_shape = in_vw.shape if any(s is None for s in mask_shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for dropout mask, " "which can be an issue with theano.clone") mask_shape = in_vw.variable.shape # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() # set bernoulli probability to be inverse of dropout probability # because 1 means to keep the unit bernoulli_prob = 1 - p mask = rescale_factor * srng.binomial(mask_shape, p=bernoulli_prob, dtype=fX) network.create_vw( "default", variable=in_vw.variable * mask, shape=in_vw.shape, tags={"output"}, )
Example #27
Source File: stochastic.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, in_vw): deterministic = network.find_hyperparameter(["deterministic"]) p = network.find_hyperparameter(["dropout_probability", "probability", "p"], 0) if deterministic or p == 0: network.copy_vw( name="default", previous_vw=in_vw, tags={"output"}, ) else: rescale_factor = 1 / (1 - p) mask_shape = in_vw.shape if any(s is None for s in mask_shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for dropout mask, " "which can be an issue with theano.clone") mask_shape = in_vw.symbolic_shape() # FIXME generalize to other shape dimensions. # assume this is of the form bc01 (batch, channel, width, height) mask_shape = mask_shape[:2] # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() # set bernoulli probability to be inverse of dropout probability # because 1 means to keep the unit bernoulli_prob = 1 - p mask = rescale_factor * srng.binomial(mask_shape, p=bernoulli_prob, dtype=fX) mask = mask.dimshuffle(0, 1, 'x', 'x') network.create_vw( "default", variable=in_vw.variable * mask, shape=in_vw.shape, tags={"output"}, )
Example #28
Source File: batch_norms.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def get_output_for(self, input, deterministic=False, **kwargs): beta = self.beta; if not deterministic: self_beta = theano.clone(self.beta, share_inputs=False); input_beta = ttt.percentile(input, self.perc); self_beta.default_update = ((1 - self.alpha) * self_beta + self.alpha * input_beta); beta += 0 * self_beta; # thresholding return theano.tensor.nnet.sigmoid(self.tight*(input-beta+self.bias));
Example #29
Source File: batch_norms.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def get_output_for(self, input, deterministic=False, **kwargs): beta = self.beta; if not deterministic: self_beta = theano.clone(self.beta, share_inputs=False); input_beta = ttt.percentile(input, self.perc); self_beta.default_update = ((1 - self.alpha) * self_beta + self.alpha * input_beta); beta += 0 * self_beta; # thresholding return theano.tensor.nnet.relu(input-beta, 0.0);
Example #30
Source File: REINFORCE.py From u24_lymphocyte with BSD 3-Clause "New" or "Revised" License | 5 votes |
def compute_output(self, network, mu_vw, sigma_vw): deterministic = network.find_hyperparameter(["deterministic"], False) if deterministic: res = mu_vw.variable else: # TODO look at shape of both mu and sigma shape = mu_vw.shape if any(s is None for s in shape): # NOTE: this uses symbolic shape - can be an issue with # theano.clone and random numbers # https://groups.google.com/forum/#!topic/theano-users/P7Mv7Fg0kUs warnings.warn("using symbolic shape for random number shape, " "which can be an issue with theano.clone") shape = mu_vw.variable.shape # TODO save this state so that we can seed the rng srng = MRG_RandomStreams() res = srng.normal(shape, avg=mu_vw.variable, std=sigma_vw.variable, dtype=fX) network.create_vw( "default", variable=theano.gradient.disconnected_grad(res), shape=mu_vw.shape, tags={"output"}, )