Python warnings.warn() Examples

def pipe_fopen(command, mode, background=True):
    if mode not in ["rb", "r"]:
        raise RuntimeError("Now only support input from pipe")

    p = subprocess.Popen(command, shell=True, stdout=subprocess.PIPE)

    def background_command_waiter(command, p):
        p.wait()
        if p.returncode != 0:
            warnings.warn("Command \"{0}\" exited with status {1}".format(
                command, p.returncode))
            _thread.interrupt_main()

    if background:
        thread = threading.Thread(target=background_command_waiter,
                                  args=(command, p))
        # exits abnormally if main thread is terminated .
        thread.daemon = True
        thread.start()
    else:
        background_command_waiter(command, p)
    return p.stdout 

def check_app_config_entries_dont_start_with_script_name(self):
        """Check for App config with sections that repeat script_name."""
        for sn, app in cherrypy.tree.apps.items():
            if not isinstance(app, cherrypy.Application):
                continue
            if not app.config:
                continue
            if sn == '':
                continue
            sn_atoms = sn.strip('/').split('/')
            for key in app.config.keys():
                key_atoms = key.strip('/').split('/')
                if key_atoms[:len(sn_atoms)] == sn_atoms:
                    warnings.warn(
                        'The application mounted at %r has config '
                        'entries that start with its script name: %r' % (sn,
                                                                         key)) 

def check_site_config_entries_in_app_config(self):
        """Check for mounted Applications that have site-scoped config."""
        for sn, app in cherrypy.tree.apps.items():
            if not isinstance(app, cherrypy.Application):
                continue

            msg = []
            for section, entries in app.config.items():
                if section.startswith('/'):
                    for key, value in entries.items():
                        for n in ('engine.', 'server.', 'tree.', 'checker.'):
                            if key.startswith(n):
                                msg.append('[%s] %s = %s' %
                                           (section, key, value))
            if msg:
                msg.insert(0,
                           'The application mounted at %r contains the '
                           'following config entries, which are only allowed '
                           'in site-wide config. Move them to a [global] '
                           'section and pass them to cherrypy.config.update() '
                           'instead of tree.mount().' % sn)
                warnings.warn(os.linesep.join(msg)) 

def get_app(self, app=None):
        """Obtain a new (decorated) WSGI app to hook into the origin server."""
        if app is None:
            app = cherrypy.tree

        if self.validate:
            try:
                from wsgiref import validate
            except ImportError:
                warnings.warn(
                    'Error importing wsgiref. The validator will not run.')
            else:
                # wraps the app in the validator
                app = validate.validator(app)

        return app 

def fprop(self, x, y, **kwargs):
        if self.attack is not None:
            x = x, self.attack(x)
        else:
            x = x,

        # Catching RuntimeError: Variable -= value not supported by tf.eager.
        try:
            y -= self.smoothing * (y - 1. / tf.cast(y.shape[-1], tf.float32))
        except RuntimeError:
            y.assign_sub(self.smoothing * (y - 1. / tf.cast(y.shape[-1],
                                                            tf.float32)))

        logits = [self.model.get_logits(x, **kwargs) for x in x]
        loss = sum(
            softmax_cross_entropy_with_logits(labels=y,
                                              logits=logit)
            for logit in logits)
        warnings.warn("LossCrossEntropy is deprecated, switch to "
                      "CrossEntropy. LossCrossEntropy may be removed on "
                      "or after 2019-03-06.")
        return loss 

def fprop(self, x, y, **kwargs):
        x_adv = self.attack(x)
        d1 = self.model.fprop(x, **kwargs)
        d2 = self.model.fprop(x_adv, **kwargs)
        pairing_loss = [tf.reduce_mean(tf.square(a - b))
                        for a, b in
                        zip(d1[Model.O_FEATURES], d2[Model.O_FEATURES])]
        pairing_loss = tf.reduce_mean(pairing_loss)
        loss = softmax_cross_entropy_with_logits(
            labels=y, logits=d1[Model.O_LOGITS])
        loss += softmax_cross_entropy_with_logits(
            labels=y, logits=d2[Model.O_LOGITS])
        warnings.warn("LossFeaturePairing is deprecated, switch to "
                      "FeaturePairing. LossFeaturePairing may be removed "
                      "on or after 2019-03-06.")
        return loss + self.weight * pairing_loss 

def to_categorical(y, num_classes=None):
    """
    Converts a class vector (integers) to binary class matrix.
    This is adapted from the Keras function with the same name.
    :param y: class vector to be converted into a matrix
              (integers from 0 to num_classes).
    :param num_classes: num_classes: total number of classes.
    :return: A binary matrix representation of the input.
    """
    y = np.array(y, dtype='int').ravel()
    if not num_classes:
        num_classes = np.max(y) + 1
        warnings.warn("FutureWarning: the default value of the second"
                      "argument in function \"to_categorical\" is deprecated."
                      "On 2018-9-19, the second argument"
                      "will become mandatory.")
    n = y.shape[0]
    categorical = np.zeros((n, num_classes))
    categorical[np.arange(n), y] = 1
    return categorical 

def _get_logits_name(self):
        """
        Looks for the name of the layer producing the logits.
        :return: name of layer producing the logits
        """
        softmax_name = self._get_softmax_name()
        softmax_layer = self.model.get_layer(softmax_name)

        if not isinstance(softmax_layer, Activation):
            # In this case, the activation is part of another layer
            return softmax_name

        if hasattr(softmax_layer, 'inbound_nodes'):
            warnings.warn(
                "Please update your version to keras >= 2.1.3; "
                "support for earlier keras versions will be dropped on "
                "2018-07-22")
            node = softmax_layer.inbound_nodes[0]
        else:
            node = softmax_layer._inbound_nodes[0]

        logits_name = node.inbound_layers[0].name

        return logits_name 

def model_loss(y, model, mean=True):
    """
    Define loss of TF graph
    :param y: correct labels
    :param model: output of the model
    :param mean: boolean indicating whether should return mean of loss
                 or vector of losses for each input of the batch
    :return: return mean of loss if True, otherwise return vector with per
             sample loss
    """
    warnings.warn('This function is deprecated.')
    op = model.op
    if op.type == "Softmax":
        logits, = op.inputs
    else:
        logits = model

    out = softmax_cross_entropy_with_logits(logits=logits, labels=y)

    if mean:
        out = reduce_mean(out)
    return out 

def infer_devices(devices=None):
    """
    Returns the list of devices that multi-replica code should use.
    :param devices: list of string device names, e.g. ["/GPU:0"]
        If the user specifies this, `infer_devices` checks that it is
        valid, and then uses this user-specified list.
        If the user does not specify this, infer_devices uses:
            - All available GPUs, if there are any
            - CPU otherwise
    """
    if devices is None:
        devices = get_available_gpus()
        if len(devices) == 0:
            warnings.warn("No GPUS, running on CPU")
            # Set device to empy string, tf will figure out whether to use
            # XLA or not, etc., automatically
            devices = [""]
    else:
        assert len(devices) > 0
        for device in devices:
            assert isinstance(device, str), type(device)
    return devices 

def enable_receiving(self):
        """
        Switch the monitor into listing mode.

        Connect to the event source and receive incoming events.  Only after
        calling this method, the monitor listens for incoming events.

        .. note::

           This method is implicitly called by :meth:`__iter__`.  You don't
           need to call it explicitly, if you are iterating over the
           monitor.

        .. deprecated:: 0.16
           Will be removed in 1.0. Use :meth:`start()` instead.
        """
        import warnings
        warnings.warn('Will be removed in 1.0. Use Monitor.start() instead.',
                      DeprecationWarning)
        self.start() 

def from_sys_path(cls, context, sys_path): #pragma: no cover
        """
        .. versionchanged:: 0.4
           Raise :exc:`NoSuchDeviceError` instead of returning ``None``, if
           no device was found for ``sys_path``.
        .. versionchanged:: 0.5
           Raise :exc:`DeviceNotFoundAtPathError` instead of
           :exc:`NoSuchDeviceError`.
        .. deprecated:: 0.18
           Use :class:`Devices.from_sys_path` instead.
        """
        import warnings
        warnings.warn(
           'Will be removed in 1.0. Use equivalent Devices method instead.',
           DeprecationWarning,
           stacklevel=2
        )
        return Devices.from_sys_path(context, sys_path) 

def traverse(self):
        """
        Traverse all parent devices of this device from bottom to top.

        Return an iterable yielding all parent devices as :class:`Device`
        objects, *not* including the current device.  The last yielded
        :class:`Device` is the top of the device hierarchy.

        .. deprecated:: 0.16
           Will be removed in 1.0. Use :attr:`ancestors` instead.
        """
        import warnings
        warnings.warn(
           'Will be removed in 1.0. Use Device.ancestors instead.',
           DeprecationWarning,
           stacklevel=2
        )
        return self.ancestors 

def __iter__(self):
        """
        Iterate over the names of all properties defined for this device.

        Return a generator yielding the names of all properties of this
        device as unicode strings.

        .. deprecated:: 0.21
           Will be removed in 1.0. Access properties with Device.properties.
        """
        import warnings
        warnings.warn(
           'Will be removed in 1.0. Access properties with Device.properties.',
           DeprecationWarning,
           stacklevel=2
        )
        return self.properties.__iter__() 

def __getitem__(self, prop):
        """
        Get the given property from this device.

        ``prop`` is a unicode or byte string containing the name of the
        property.

        Return the property value as unicode string, or raise a
        :exc:`~exceptions.KeyError`, if the given property is not defined
        for this device.

        .. deprecated:: 0.21
           Will be removed in 1.0. Access properties with Device.properties.
        """
        import warnings
        warnings.warn(
           'Will be removed in 1.0. Access properties with Device.properties.',
           DeprecationWarning,
           stacklevel=2
        )
        return self.properties.__getitem__(prop) 

def asint(self, prop):
        """
        Get the given property from this device as integer.

        ``prop`` is a unicode or byte string containing the name of the
        property.

        Return the property value as integer. Raise a
        :exc:`~exceptions.KeyError`, if the given property is not defined
        for this device, or a :exc:`~exceptions.ValueError`, if the property
        value cannot be converted to an integer.

        .. deprecated:: 0.21
           Will be removed in 1.0. Use Device.properties.asint() instead.
        """
        import warnings
        warnings.warn(
           'Will be removed in 1.0. Use Device.properties.asint instead.',
           DeprecationWarning,
           stacklevel=2
        )
        return self.properties.asint(prop) 

def fit(self, inputs, outputs, weights=None, override=False):
        """
        Fit model.

        Args:
            inputs (list/Array): List/Array of input training objects.
            outputs (list/Array): List/Array of output values
                (supervisory signals).
            weights (list/Array): List/Array of weights. Default to None,
                i.e., unweighted.
            override (bool): Whether to calculate the feature vectors
                from given inputs. Default to False. Set to True if
                you want to retrain the model with a different set of
                training inputs.
        """
        if self._xtrain is None or override:
            xtrain = self.describer.describe_all(inputs)
        else:
            warnings.warn("Feature vectors retrieved from cache "
                          "and input training objects ignored. "
                          "To override the old cache with feature vectors "
                          "of new training objects, set override=True.")
            xtrain = self._xtrain
        self.model.fit(xtrain, outputs, weights)
        self._xtrain = xtrain 

def predict(self, inputs, override=False):
        """
        Predict outputs with fitted model.

        Args:
            inputs (list/Array): List/Array of input testing objects.
            override (bool): Whether to calculate the feature
                vectors from given inputs. Default to False. Set to True
                if you want to test the model with a different set of
                testing inputs.

        Returns:
            Predicted output array from inputs.
        """
        if self._xtest is None or override:
            xtest = self.describer.describe_all(inputs)
        else:
            warnings.warn("Feature vectors retrieved from cache "
                          "and input testing objects ignored. "
                          "To override the old cache with feature vectors "
                          "of new testing objects, set override=True.")
            xtest = self._xtest
        self._xtest = xtest
        return self.model.predict(xtest) 

def fit(self, inputs, outputs, override=False):
        """
        Args:
            inputs (list): List of input training objects.
            outputs (list): List/Array of output values
                (supervisory signals).
            override: (bool) Whether to calculate the feature
                vectors from given inputs. Default to False. Set to True if
                you want to retrain the model with a different set of
                training inputs.
        """
        if not self._xtrain or override:
            xtrain = self.describer.describe_all(inputs)
        else:
            warnings.warn("Feature vectors retrieved from cache "
                          "and input training objects ignored. "
                          "To override the old cache with feature vectors "
                          "of new training objects, set override=True.")
            xtrain = self._xtrain
        self.model.fit(xtrain, outputs)
        self._xtrain = xtrain 

def predict(self, inputs, override=False, **kwargs):
        """
        Args:
            inputs (List): List of input testing objects.
            override: (bool) Whether to calculate the feature
                vectors from given inputs. Default to False. Set to True if
                you want to test the model with a different set of testing inputs.
            kwargs: kwargs to be passed to predict method, e.g.
                return_std, return_cov.
        Returns:
            Predicted output array from inputs.
        """
        if self._xtest is None or override:
            xtest = self.describer.describe_all(inputs)
        else:
            warnings.warn("Feature vectors retrieved from cache "
                          "and input testing objects ignored. "
                          "To override the old cache with feature vectors "
                          "of new testing objects, set override=True.")
            xtest = self._xtest
        self._xtest = xtest
        return self.model.predict(xtest, **kwargs) 

def rc():
        '''
        config.rc() yields the data imported from the Neuropythy rc file, if any.
        '''
        if config._rc is None:
            # First: We check to see if we have been given a custom nptyhrc file:
            npythyrc_path = os.path.expanduser('~/.npythyrc')
            if 'NPYTHYRC' in os.environ:
                npythyrc_path = os.path.expanduser(os.path.expandvars(os.environ['NPYTHYRC']))
            # the default config:
            if os.path.isfile(npythyrc_path):
                try:
                    config._rc = loadrc(npythyrc_path)
                    config._rc['npythyrc_loaded'] = True
                except Exception as err:
                    warnings.warn('Could not load neuropythy RC file: %s' % npythyrc_path)
                    config._rc = {'npythyrc_loaded':False,
                                  'npythyrc_error': err}
            else:
                config._rc = {'npythyrc_loaded':False}
            config._rc['npythyrc'] = npythyrc_path
        return config._rc 

def __setitem__(self, key, value):
        if key not in self.agents or self.agents[key] is None:
            self.agents[key] = value
            if value is None:
                warnings.warn("Trying to set the value of key {} to None.".
                              format(key), RuntimeWarning)
        else:
            pass
            # this fails the tests at the moment, so we need to debug
            # it is the tests that have a problem!
            # raise KeyError("The key \"{}\" already exists in the registry"
            #                .format(key)) 

def _configure_logging(level=logging.INFO):
    logging.addLevelName(logging.DEBUG, 'Debug:')
    logging.addLevelName(logging.INFO, 'Info:')
    logging.addLevelName(logging.WARNING, 'Warning!')
    logging.addLevelName(logging.CRITICAL, 'Critical!')
    logging.addLevelName(logging.ERROR, 'Error!')

    logging.basicConfig(format='%(levelname)s %(message)s', level=logging.INFO)

    if not sys.warnoptions:
        import warnings
        warnings.simplefilter("ignore")
        # TODO hack to get rid of deprecation warning that appeared allthough filters
        # are set to ignore. Is there a more sane way?
        warnings.warn = lambda *args, **kwargs: None 

def add_member(self, login):
        """Add ``login`` to this team.

        :returns: bool
        """
        warnings.warn(
            'This is no longer supported by the GitHub API, see '
            'https://developer.github.com/changes/2014-09-23-one-more-week'
            '-before-the-add-team-member-api-breaking-change/',
            DeprecationWarning)
        url = self._build_url('members', login, base_url=self._api)
        return self._boolean(self._put(url), 204, 404) 

def remove_member(self, login):
        """Remove ``login`` from this team.

        :param str login: (required), login of the member to remove
        :returns: bool
        """
        warnings.warn(
            'This is no longer supported by the GitHub API, see '
            'https://developer.github.com/changes/2014-09-23-one-more-week'
            '-before-the-add-team-member-api-breaking-change/',
            DeprecationWarning)
        url = self._build_url('members', login, base_url=self._api)
        return self._boolean(self._delete(url), 204, 404) 

def add_member(self, login, team):
        """Add ``login`` to ``team`` and thereby to this organization.

        .. warning::
            This method is no longer valid. To add a member to a team, you
            must now retrieve the team directly, and use the ``invite``
            method.

        Any user that is to be added to an organization, must be added
        to a team as per the GitHub api.

        .. note::
            This method is of complexity O(n). This iterates over all teams in
            your organization and only adds the user when the team name
            matches the team parameter above. If you want constant time, you
            should retrieve the team and call ``add_member`` on that team
            directly.

        :param str login: (required), login name of the user to be added
        :param str team: (required), team name
        :returns: bool
        """
        warnings.warn(
            'This is no longer supported by the GitHub API, see '
            'https://developer.github.com/changes/2014-09-23-one-more-week'
            '-before-the-add-team-member-api-breaking-change/',
            DeprecationWarning)
        for t in self.iter_teams():
            if team == t.name:
                return t.add_member(login)
        return False 

def _cleanup(cls, name, warn_message):
        _rmtree(name)
        _warnings.warn(warn_message, _ResourceWarning) 

def isotropic_powerspectrum(*args, **kwargs): # pragma: no cover
    """
    Deprecated function. See isotropic_power_spectrum doc
    """
    import warnings
    msg = "This function has been renamed and will disappear in the future."\
          +" Please use isotropic_power_spectrum instead"
    warnings.warn(msg, Warning)
    return isotropic_power_spectrum(*args, **kwargs) 

def isotropic_crossspectrum(*args, **kwargs): # pragma: no cover
    """
    Deprecated function. See isotropic_cross_spectrum doc
    """
    import warnings
    msg = "This function has been renamed and will disappear in the future."\
          +" Please use isotropic_cross_spectrum instead"
    warnings.warn(msg, Warning)
    return isotropic_cross_spectrum(*args, **kwargs) 

def check_skipped_app_config(self):
        """Check for mounted Applications that have no config."""
        for sn, app in cherrypy.tree.apps.items():
            if not isinstance(app, cherrypy.Application):
                continue
            if not app.config:
                msg = 'The Application mounted at %r has an empty config.' % sn
                if self.global_config_contained_paths:
                    msg += (' It looks like the config you passed to '
                            'cherrypy.config.update() contains application-'
                            'specific sections. You must explicitly pass '
                            'application config via '
                            'cherrypy.tree.mount(..., config=app_config)')
                warnings.warn(msg)
                return