Java Code Examples for ij.gui.GenericDialog#addPreviewCheckbox()
The following examples show how to use
ij.gui.GenericDialog#addPreviewCheckbox() .
You can vote up the ones you like or vote down the ones you don't like,
and go to the original project or source file by following the links above each example. You may check out the related API usage on the sidebar.
Example 1
| Source File: SetLabelMapPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 6 votes |
|
public GenericDialog showDialog()
{
// Create a new generic dialog with appropriate options
GenericDialog gd = new GenericDialog("Set Label Map");
gd.addChoice("Colormap", CommonLabelMaps.getAllLabels(), CommonLabelMaps.GOLDEN_ANGLE.getLabel());
gd.addChoice("Background", CommonColors.getAllLabels(), CommonColors.WHITE.toString());
gd.addCheckbox("Shuffle", true);
gd.addPreviewCheckbox(null);
gd.addDialogListener(this);
parseDialogParameters(gd);
gd.showDialog();
return gd;
}
Example 2
| Source File: GrayscaleAreaOpeningPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 6 votes |
|
@Override
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)
{
// Create the configuration dialog
GenericDialog gd = new GenericDialog("Gray Scale Area Opening");
gd.addNumericField("Pixel Number", 100, 0, 10, "pixels");
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
gd.showDialog();
previewing = false;
if (gd.wasCanceled())
return DONE;
parseDialogParameters(gd);
// clean up an return
gd.dispose();
return flags;
}
Example 3
| Source File: GrayscaleBoxDiameterOpeningPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 6 votes |
|
@Override
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)
{
// Create the configuration dialog
GenericDialog gd = new GenericDialog("Gray Scale Box Diagonal Opening");
gd.addNumericField("Diagonal Min.", 100, 0, 10, "pixels");
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
gd.showDialog();
previewing = false;
if (gd.wasCanceled())
return DONE;
parseDialogParameters(gd);
// clean up an return
gd.dispose();
return flags;
}
Example 4
| Source File: AreaOpeningPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 6 votes |
|
@Override
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)
{
// Create the configuration dialog
GenericDialog gd = new GenericDialog("Area Opening");
gd.addNumericField("Pixel Number", 100, 0, 10, "pixels");
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
gd.showDialog();
previewing = false;
if (gd.wasCanceled())
return DONE;
parseDialogParameters(gd);
// clean up an return
gd.dispose();
return flags;
}
Example 5
| Source File: ShenCastan.java From Scripts with GNU General Public License v3.0 | 6 votes |
|
/** Displays the dialog prompt. */
@Override
public int showDialog(final ImagePlus imp, final String command, final PlugInFilterRunner pfr) {
this.pfr = pfr;
final String msg = "<html><div WIDTH=350>"
+ "<a href='https://github.com/tferr/Scripts/blob/master/Segmentation/README.md#shen-castan-edge-detector'>"
+ "Shen-Castan</a> filtering is an edge detection technique. It is an alternative "
+ "to other popular approaches such as "
+ "<a href='http://en.wikipedia.org/wiki/Canny_edge_detector'>Canny</a>-"
+ "<a href='http://en.wikipedia.org/wiki/Deriche_edge_detector'>Deriche</a> filtering.</p>"
+ "<p>The Shen-Castan coefficient corresponds to a smooting factor <i>alpha</i>. "
+ "<i>Alpha</i> can vary between 0 (high smoothing, suitable for noisy images) "
+ "and 1 (no smoothing, suitable for non-noisy images).</p></div></html>";
final GenericDialog gd = new GenericDialog(command);
gd.addSlider("Coefficient:", 0.0001d, 1.0001d, f);
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
gd.addHelp(msg);
gd.showDialog();
if (gd.wasCanceled() || !dialogItemChanged(gd, null)) // read parameters
return DONE;
return IJ.setupDialog(imp, flags);
}
Example 6
| Source File: BinaryOrbit.java From orbit-image-analysis with GNU General Public License v3.0 | 5 votes |
|
public int showDialog (ImagePlus imp, String command, PlugInFilterRunner pfr) {
if (doOptions) {
this.imp = imp;
this.pfr = pfr;
GenericDialog gd = new GenericDialog("Binary Options");
gd.addNumericField("Iterations (1-"+MAX_ITERATIONS+"):", iterations, 0, 3, "");
gd.addNumericField("Count (1-8):", count, 0, 3, "");
gd.addCheckbox("Black background", Prefs.blackBackground);
gd.addCheckbox("Pad edges when eroding", Prefs.padEdges);
gd.addChoice("EDM output:", outputTypes, outputTypes[EDM.getOutputType()]);
if (imp != null) {
gd.addChoice("Do:", operations, operation);
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
}
gd.addHelp(IJ.URL+"/docs/menus/process.html#options");
gd.showDialog();
previewing = false;
if (gd.wasCanceled()) return DONE;
if (imp==null) { //options dialog only, no do/preview
dialogItemChanged(gd, null); //read dialog result
return DONE;
}
return operation.equals(NO_OPERATION) ? DONE : IJ.setupDialog(imp, flags);
} else { //no dialog, 'arg' is operation type
if (!imp.getProcessor().isBinary()) {
IJ.error("8-bit binary (black and white only) image required.");
return DONE;
}
return IJ.setupDialog(imp, flags);
}
}
Example 7
| Source File: ChamferDistanceMapPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 5 votes |
|
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)
{
// Store user data
this.imagePlus = imp;
this.baseImage = imp.getProcessor().duplicate();
this.pfr = pfr;
// Create a new generic dialog with appropriate options
GenericDialog gd = new GenericDialog("Chamfer Distance Map");
gd.addChoice("Distances", ChamferWeights.getAllLabels(),
ChamferWeights.BORGEFORS.toString());
String[] outputTypes = new String[]{"32 bits", "16 bits"};
gd.addChoice("Output Type", outputTypes, outputTypes[0]);
gd.addCheckbox("Normalize weights", true);
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
gd.addHelp("https://imagej.net/MorphoLibJ");
gd.showDialog();
previewing = false;
// test cancel
if (gd.wasCanceled())
return DONE;
// set up current parameters
String weightLabel = gd.getNextChoice();
floatProcessing = gd.getNextChoiceIndex() == 0;
normalize = gd.getNextBoolean();
// identify which weights should be used
weights = ChamferWeights.fromLabel(weightLabel);
return flags;
}
Example 8
| Source File: GrayscaleAttributeFilteringPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 5 votes |
|
@Override
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)
{
// Create the configuration dialog
GenericDialog gd = new GenericDialog("Gray Scale Attribute Filtering");
gd.addChoice("Operation", Operation.getAllLabels(), Operation.OPENING.label);
gd.addChoice("Attribute", Attribute.getAllLabels(), Attribute.AREA.label);
gd.addNumericField("Minimum Value", 100, 0, 10, "pixels");
gd.addChoice("Connectivity", connectivityLabels, connectivityLabels[0]);
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
gd.showDialog();
previewing = false;
if (gd.wasCanceled())
{
resetPreview();
return DONE;
}
parseDialogParameters(gd);
// clean up an return
gd.dispose();
return flags;
}
Example 9
| Source File: MorphologicalFilterPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 5 votes |
|
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)
{
// Normal setup
this.imagePlus = imp;
this.baseImage = imp.getProcessor().duplicate();
// Create the configuration dialog
GenericDialog gd = new GenericDialog("Morphological Filters");
gd.addChoice("Operation", Operation.getAllLabels(),
this.op.toString());
gd.addChoice("Element", Strel.Shape.getAllLabels(),
this.shape.toString());
gd.addNumericField("Radius (in pixels)", this.radius, 0);
gd.addCheckbox("Show Element", false);
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
gd.addHelp("http://imagej.net/MorphoLibJ#Morphological_filters");
gd.showDialog();
previewing = false;
if (gd.wasCanceled())
{
resetPreview();
return DONE;
}
parseDialogParameters(gd);
// clean up an return
gd.dispose();
return flags;
}
Example 10
| Source File: RegionalMinAndMaxPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 5 votes |
|
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr) {
// Normal setup
this.imagePlus = imp;
this.baseImage = imp.getProcessor().duplicate();
// Create the configuration dialog
GenericDialog gd = new GenericDialog("Regional Min & Max");
gd.addChoice("Operation", Operation.getAllLabels(),
Operation.REGIONAL_MINIMA.label);
gd.addChoice("Connectivity", connectivityLabels, connectivityLabels[0]);
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
gd.addHelp("https://imagej.net/MorphoLibJ");
gd.showDialog();
previewing = false;
if (gd.wasCanceled())
return DONE;
parseDialogParameters(gd);
// clean up an return
gd.dispose();
return flags;
}
Example 11
| Source File: ExtendedMinAndMaxPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 5 votes |
|
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr) {
// Normal setup
this.imagePlus = imp;
this.baseImage = imp.getProcessor().duplicate();
// Create the configuration dialog
GenericDialog gd = new GenericDialog("Extended Min & Max");
gd.addChoice("Operation", Operation.getAllLabels(), Operation.EXTENDED_MINIMA.label);
boolean isGray8 = (this.baseImage instanceof ByteProcessor);
double minValue = isGray8 ? 1 : this.baseImage.getMin();
double maxValue = isGray8 ? 255 : this.baseImage.getMax();
gd.addSlider("Dynamic", minValue, maxValue, 10);
gd.addChoice("Connectivity", connectivityLabels, connectivityLabels[0]);
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
gd.addHelp("https://imagej.net/MorphoLibJ");
gd.showDialog();
previewing = false;
if (gd.wasCanceled()) {
return DONE;
}
parseDialogParameters(gd);
// clean up an return
gd.dispose();
return flags;
}
Example 12
| Source File: DirectionalFilteringPlugin.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 5 votes |
|
@Override
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)
{
// Normal setup
this.imagePlus = imp;
this.baseImage = imp.getProcessor().duplicate();
// Create the configuration dialog
GenericDialog gd = new GenericDialog("Directional Filtering");
gd.addChoice("Type", Type.getAllLabels(), this.type.toString());
gd.addChoice("Operation", Operation.getAllLabels(), this.op.toString());
gd.addNumericField("Line Length", this.lineLength, 0, 8, "pixels");
gd.addNumericField("Direction Number", this.nDirections, 0);
gd.addPreviewCheckbox(pfr);
gd.addDialogListener(this);
previewing = true;
// gd.addHelp("http://imagejdocu.tudor.lu/doku.php?id=plugin:morphology:fast_morphological_filters:start");
gd.showDialog();
previewing = false;
if (gd.wasCanceled())
{
return DONE;
}
parseDialogParameters(gd);
// clean up an return
gd.dispose();
return flags;
}
Example 13
| Source File: RankFiltersOrbit.java From orbit-image-analysis with GNU General Public License v3.0 | 4 votes |
|
public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr) {
if (filterType == DESPECKLE) {
filterType = MEDIAN;
radius = 1.0;
} else {
GenericDialog gd = new GenericDialog(command+"...");
radius = lastRadius[filterType]<=0 ? 2 : lastRadius[filterType];
gd.addNumericField("Radius", radius, 1, 6, "pixels");
int digits = imp.getType() == ImagePlus.GRAY32 ? 2 : 0;
if (filterType==OUTLIERS) {
gd.addNumericField("Threshold", lastThreshold, digits);
gd.addChoice("Which outliers", outlierStrings, outlierStrings[lastWhichOutliers]);
gd.addHelp(IJ.URL+"/docs/menus/process.html#outliers");
} else if (filterType==REMOVE_NAN)
gd.addHelp(IJ.URL+"/docs/menus/process.html#nans");
gd.addPreviewCheckbox(pfr); //passing pfr makes the filter ready for preview
gd.addDialogListener(this); //the DialogItemChanged method will be called on user input
gd.showDialog(); //display the dialog; preview runs in the now
if (gd.wasCanceled()) return DONE;
IJ.register(this.getClass()); //protect static class variables (filter parameters) from garbage collection
if (Macro.getOptions() == null) { //interactive only: remember parameters entered
lastRadius[filterType] = radius;
if (filterType == OUTLIERS) {
lastThreshold = threshold;
lastWhichOutliers = whichOutliers;
}
}
}
this.pfr = pfr;
flags = IJ.setupDialog(imp, flags); //ask whether to process all slices of stack (if a stack)
if ((flags&DOES_STACKS)!=0) {
int size = imp.getWidth() * imp.getHeight();
Roi roi = imp.getRoi();
if (roi != null) {
Rectangle roiRect = roi.getBounds();
size = roiRect.width * roiRect.height;
}
double workToDo = size*(double)radius; //estimate computing time (arb. units)
if (filterType==MEAN || filterType==VARIANCE) workToDo *= 0.5;
else if (filterType==MEDIAN) workToDo *= radius*0.5;
if (workToDo < 1e6 && imp.getImageStackSize()>=numThreads) {
numThreads = 1; //for fast operations, avoid overhead of multi-threading in each image
flags |= PARALLELIZE_STACKS;
}
}
return flags;
}
Example 14
| Source File: DistanceTransformWatershed.java From MorphoLibJ with GNU Lesser General Public License v3.0 | 4 votes |
|
public int showDialog(
ImagePlus imp,
String command,
PlugInFilterRunner pfr )
{
if( !BinaryImages.isBinaryImage( imp ) )
{
IJ.error( "Distance Transform Watershed", "Input image is not"
+ " binary (8-bit with only 0 or 255 values)" );
return DONE;
}
// Store user data
this.imagePlus = imp;
this.baseImage = imp.getProcessor().duplicate();
this.pfr = pfr;
// Create a new generic dialog with appropriate options
GenericDialog gd = new GenericDialog( "Distance Transform Watershed" );
gd.setInsets( 0, 0, 0 );
gd.addMessage( "Distance map options:",
new Font( "SansSerif", Font.BOLD, 12 ) );
gd.addChoice( "Distances", ChamferWeights.getAllLabels(), weightLabel );
String[] outputTypes = new String[]{"32 bits", "16 bits"};
gd.addChoice( "Output Type", outputTypes, outputTypes[ floatProcessing ? 0:1 ]);
gd.setInsets( 0, 0, 0 );
gd.addCheckbox( "Normalize weights", normalize );
gd.setInsets( 20, 0, 0 );
gd.addMessage( "Watershed options:",
new Font( "SansSerif", Font.BOLD, 12 ) );
gd.addNumericField( "Dynamic", dynamic, 2 );
gd.addChoice( "Connectivity", Conn2D.getAllLabels(), connLabel );
gd.setInsets( 20, 0, 0 );
gd.addPreviewCheckbox( pfr );
gd.addDialogListener(this);
previewing = true;
gd.addHelp( "http://imagej.net/MorphoLibJ#Utilities_for_binary_images" );
gd.showDialog();
previewing = false;
// test cancel
if (gd.wasCanceled())
return DONE;
// set up current parameters
weightLabel = gd.getNextChoice();
floatProcessing = gd.getNextChoiceIndex() == 0;
normalize = gd.getNextBoolean();
dynamic = (int) gd.getNextNumber();
connLabel = gd.getNextChoice();
connectivity = Conn2D.fromLabel( connLabel ).getValue();
// identify which weights should be used
weights = ChamferWeights.fromLabel( weightLabel );
return flags;
}
