Java Code Examples for com.google.common.collect.Range#atLeast()

private static <C extends Comparable<C>> Range<C> range(SqlKind comparison,
    C c) {
  switch (comparison) {
  case EQUALS:
    return Range.singleton(c);
  case LESS_THAN:
    return Range.lessThan(c);
  case LESS_THAN_OR_EQUAL:
    return Range.atMost(c);
  case GREATER_THAN:
    return Range.greaterThan(c);
  case GREATER_THAN_OR_EQUAL:
    return Range.atLeast(c);
  default:
    throw new AssertionError();
  }
}
 

private static <C extends Comparable<C>> Range<C> range(SqlKind comparison, C c) {
    switch (comparison) {
    case EQUALS:
        return Range.singleton(c);
    case LESS_THAN:
        return Range.lessThan(c);
    case LESS_THAN_OR_EQUAL:
        return Range.atMost(c);
    case GREATER_THAN:
        return Range.greaterThan(c);
    case GREATER_THAN_OR_EQUAL:
        return Range.atLeast(c);
    default:
        throw new AssertionError();
    }
}
 

@Override
public Range<Long> visitAggregation(AggregationNode node, Void context)
{
    if (node.hasEmptyGroupingSet() && node.getGroupingSetCount() == 1) {
        // only single default aggregation which will produce exactly single row
        return Range.singleton(1L);
    }

    Range<Long> sourceCardinalityRange = node.getSource().accept(this, null);

    long lower;
    if (node.hasDefaultOutput() || sourceCardinalityRange.lowerEndpoint() > 0) {
        lower = 1;
    }
    else {
        lower = 0;
    }

    if (sourceCardinalityRange.hasUpperBound()) {
        long upper = Math.max(lower, sourceCardinalityRange.upperEndpoint());
        return Range.closed(lower, upper);
    }

    return Range.atLeast(lower);
}
 

/**
 * @see net.sf.mzmine.modules.masslistmethods.shoulderpeaksfilter.peakpicking.twostep.peakmodel.PeakModel#getBasePeakWidth()
 */
public Range<Double> getWidth(double partialIntensity) {

  // The height value must be bigger than zero.
  if (partialIntensity <= 0)
    return Range.atLeast(0.0);

  // Using the Gaussian function we calculate the peak width at intensity
  // given (partialIntensity)

  double portion = partialIntensity / intensityMain;
  double ln = -1 * (double) Math.log(portion);

  double sideRange = (double) (Math.sqrt(part2C2 * ln));

  // This range represents the width of our peak in m/z
  Range<Double> rangePeak = Range.closed(mzMain - sideRange, mzMain + sideRange);

  return rangePeak;
}
 

public static Range makeRange(ByteString startKey, ByteString endKey) {
  if (startKey.isEmpty() && endKey.isEmpty()) {
    return Range.all();
  }
  if (startKey.isEmpty()) {
    return Range.lessThan(Comparables.wrap(endKey));
  } else if (endKey.isEmpty()) {
    return Range.atLeast(Comparables.wrap(startKey));
  }
  return Range.closedOpen(Comparables.wrap(startKey), Comparables.wrap(endKey));
}
 

@MethodParser("kill-streak")
public KillStreakFilter parseKillStreak(Element el) throws InvalidXMLException {
    boolean repeat = XMLUtils.parseBoolean(el.getAttribute("repeat"), false);
    boolean persistent = XMLUtils.parseBoolean(el.getAttribute("persistent"), false);
    Integer count = XMLUtils.parseNumber(el.getAttribute("count"), Integer.class, (Integer) null);
    Integer min = XMLUtils.parseNumber(el.getAttribute("min"), Integer.class, (Integer) null);
    Integer max = XMLUtils.parseNumber(el.getAttribute("max"), Integer.class, (Integer) null);
    Range<Integer> range;

    if(count != null) {
        range = Range.singleton(count);
    } else if(min == null) {
        if(max == null) {
            throw new InvalidXMLException("kill-streak filter must have a count, min, or max", el);
        } else {
            range = Range.atMost(max);
        }
    } else {
        if(max == null) {
            range = Range.atLeast(min);
        } else {
            range = Range.closed(min, max);
        }
    }

    if(repeat && !range.hasUpperBound()) {
        throw new InvalidXMLException("repeating kill-streak filter must have a count or max", el);
    }

    return new KillStreakFilter(range, repeat, persistent);
}
 

/**
 * Test the SplitMarker and WeightedMarker constructors and method addMarker
 */
@Test
public void testAddSubMarker() {
    PeriodicMarker marker = new PeriodicMarker("name", "label", "id", "referenceid", "color", 1.0, "ms", Range.atLeast(0L), 0L, ImmutableRangeSet.of(Range.all()));
    SubMarker subMarkerA = new SplitMarker("A", "a", "a", "color", Range.atLeast(0L), ImmutableRangeSet.of(Range.all()));
    marker.addSubMarker(subMarkerA);
    SubMarker subMarkerB = new WeightedMarker("B");
    marker.addSubMarker(subMarkerB);
    assertEquals(Arrays.asList(subMarkerA, subMarkerB), marker.getSubMarkers());
}
 

/**
 * Constructor
 *
 * @param builder
 */
private RangeHeader(final Builder builder) {

  this.field = builder.field;

  if (builder.fromId != null && builder.toId != null) {
    if (builder.fromInclusive && builder.toInclusive) {
      range = Range.closed(builder.fromId, builder.toId);
    } else if (builder.fromInclusive && !builder.toInclusive) {
      range = Range.closedOpen(builder.fromId, builder.toId);
    } else if (!builder.fromInclusive && builder.toInclusive) {
      range = Range.openClosed(builder.fromId, builder.toId);
    } else {
      range = Range.open(builder.fromId, builder.toId);
    }
  } else if (builder.fromId != null && builder.toId == null) {
    if (builder.fromInclusive) {
      range = Range.atLeast(builder.fromId);
    } else {
      range = Range.greaterThan(builder.fromId);
    }
  } else if (builder.fromId == null && builder.toId != null) {
    if (builder.toInclusive) {
      range = Range.atMost(builder.toId);
    } else {
      range = Range.lessThan(builder.toId);
    }
  } else {
    range = Range.all();
  }

  this.max = builder.max;
}
 

public void loadIsotopes(IsotopePattern newPattern) {
  // We need to find a normalization factor for the new isotope
  // pattern, to show meaningful intensity range
  double mz = newPattern.getHighestDataPoint().getMZ();
  Range<Double> searchMZRange = Range.closed(mz - 0.5, mz + 0.5);
  ScanDataSet scanDataSet = spectrumPlot.getMainScanDataSet();
  double normalizationFactor = scanDataSet.getHighestIntensity(searchMZRange);

  // If normalization factor is 0, it means there were no data points
  // in given m/z range. In such case we use the max intensity of
  // whole scan as normalization factor.
  if (normalizationFactor == 0) {
    searchMZRange = Range.atLeast(0.0);
    normalizationFactor = scanDataSet.getHighestIntensity(searchMZRange);
  }

  IsotopePattern normalizedPattern =
      IsotopePatternCalculator.normalizeIsotopePattern(newPattern, normalizationFactor);
  Color newColor;
  if (newPattern.getStatus() == IsotopePatternStatus.DETECTED)
    newColor = detectedIsotopesColor;
  else
    newColor = predictedIsotopesColor;
  IsotopesDataSet newDataSet = new IsotopesDataSet(normalizedPattern);
  spectrumPlot.addDataSet(newDataSet, newColor, true);

}
 

/**
 * @see io.github.mzmine.modules.masslistmethods.shoulderpeaksfilter.peakpicking.twostep.peakmodel.PeakModel#getBasePeakWidth()
 */
public Range<Double> getWidth(double partialIntensity) {

  // The height value must be bigger than zero.
  if (partialIntensity <= 0)
    return Range.atLeast(0.0);

  if (partialIntensity < shoulderIntensity)
    return shoulderPeak.getWidth(partialIntensity);
  else
    return mainPeak.getWidth(partialIntensity);

}
 

/**
 * @see net.sf.mzmine.modules.masslistmethods.shoulderpeaksfilter.peakpicking.twostep.peakmodel.PeakModel#getBasePeakWidth()
 */
public Range<Double> getWidth(double partialIntensity) {

  // The height value must be bigger than zero.
  if (partialIntensity <= 0)
    return Range.atLeast(0.0);

  if (partialIntensity < shoulderIntensity)
    return shoulderPeak.getWidth(partialIntensity);
  else
    return mainPeak.getWidth(partialIntensity);

}
 

public void loadIsotopes(IsotopePattern newPattern) {
  // We need to find a normalization factor for the new isotope
  // pattern, to show meaningful intensity range
  double mz = newPattern.getHighestDataPoint().getMZ();
  Range<Double> searchMZRange = Range.closed(mz - 0.5, mz + 0.5);
  ScanDataSet scanDataSet = spectrumPlot.getMainScanDataSet();
  double normalizationFactor = scanDataSet.getHighestIntensity(searchMZRange);

  // If normalization factor is 0, it means there were no data points
  // in given m/z range. In such case we use the max intensity of
  // whole scan as normalization factor.
  if (normalizationFactor == 0) {
    searchMZRange = Range.atLeast(0.0);
    normalizationFactor = scanDataSet.getHighestIntensity(searchMZRange);
  }

  IsotopePattern normalizedPattern =
      IsotopePatternCalculator.normalizeIsotopePattern(newPattern, normalizationFactor);
  Color newColor;
  if (newPattern.getStatus() == IsotopePatternStatus.DETECTED)
    newColor = detectedIsotopesColor;
  else
    newColor = predictedIsotopesColor;
  IsotopesDataSet newDataSet = new IsotopesDataSet(normalizedPattern);
  spectrumPlot.addDataSet(newDataSet, newColor, true);

}
 

TimeRangeShardLocator(TimeRangeStrategy.TIME_PATTERN timePattern) {
    switch (timePattern){
        case WEEK_OF_YEAR:
            field = Calendar.WEEK_OF_YEAR;
            range = Range.atLeast(1);
            period = DAY * 366L;
            break;
        case WEEK_OF_MONTH:
            field = Calendar.WEEK_OF_MONTH;
            range = Range.atLeast(1);
            period = DAY * 31L;
            break;
        case DAY_OF_MONTH:
            field = Calendar.DAY_OF_MONTH;
            range = Range.atLeast(1);
            period = DAY * 31L;
            break;
        case DAY_OF_YEAR:
            field = Calendar.DAY_OF_YEAR;
            range = Range.atLeast(1);
            period = DAY * 366L;
            break;
        case DAY_OF_WEEK:
            field = Calendar.DAY_OF_WEEK;
            range = Range.closed(1, 7);
            period = DAY * 7;
            break;
        case HOUR_OF_DAY:
            field = Calendar.HOUR_OF_DAY;
            range = Range.closed(0, 23);
            period = DAY;
            break;
        case MINUTE_OF_HOUR:
            field = Calendar.MINUTE;
            range = Range.closed(0, 59);
            period = HOUR;
            break;
        case SECOND_OF_MINUTE:
            field = Calendar.SECOND;
            range = Range.closed(0, 59);
            period = MINUTE;
            break;
    }
}
 

/**
 * Returns a list of {@link Range}s, each indicating a range of byte indices (inclusive).
 *
 * Range: bytes=0-10 (from byte 0 to byte 10)
 * Range: bytes=500-999 (from byte 500 to byte 999)
 * Range: bytes=500- (from byte 500 to the end)
 * Range: bytes=-500 (the last 500 bytes, per the RFC)
 *
 * @return {@code null} if the requested range cannot be satisfied given the size of the content, or an empty list in
 * the case of parsing errors
 */
public List<Range<Long>> parseRangeSpec(final String rangeHeader, long size) {
  Range<Long> content = Range.closed(0L, size - 1L);

  // TODO: Current limitation: only one Range of bytes supported in forms of "-X", "X-Y" (where X<Y) and "X-".
  if (!Strings.isNullOrEmpty(rangeHeader)) {
    try {
      if (rangeHeader.startsWith("bytes=") && rangeHeader.length() > 6 && !rangeHeader.contains(",")) {
        final String rangeSpec = rangeHeader.substring(6, rangeHeader.length());
        if (rangeSpec.startsWith("-")) {
          final long byteCount = Long.parseLong(rangeSpec.substring(1));
          if (byteCount > size) {
            return UNSATISFIABLE;
          }
          final Range<Long> suffix = Range.atLeast(size - byteCount);
          return ensureSatisfiable(suffix, content);
        }
        else if (rangeSpec.endsWith("-")) {
          final Range<Long> requested = Range.atLeast(Long.parseLong(rangeSpec.substring(0, rangeSpec.length() - 1)));
          return ensureSatisfiable(requested, content);
        }
        else if (rangeSpec.contains("-")) {
          final String[] parts = rangeSpec.split("-");
          return ensureSatisfiable(Range.closed(Long.parseLong(parts[0]), Long.parseLong(parts[1])), content);
        }
        else {
          log.warn("Malformed HTTP Range value: {}, ignoring it", rangeHeader);
        }
      }
      else {
        log.warn("Unsupported non-byte or multiple HTTP Ranges: {}; sending complete content", rangeHeader);
      }
    }
    catch (Exception e) {
      if (log.isDebugEnabled()) {
        log.debug("Problem parsing Range value: {}, ignoring", rangeHeader, e);
      }
      else {
        log.warn("Problem parsing Range value: {}, ignoring: {}", rangeHeader, e.toString());
      }
    }
  }

  return WHOLE_RANGE;
}
 

public DataPointSearchCriteriaBuilder setCreationTimestampLowerEndpoint(OffsetDateTime lowerEndpoint) {
    this.creationTimestampLowerEndpoint = lowerEndpoint != null ? Range.atLeast(lowerEndpoint) : Range.all();
    return this;
}
 

public static Range<Version> createRangeOf(final Version from, final Version to) {
    if (from == null || Version.NULL.equals(from)) {
        return to == null || Version.NULL.equals(to) ? Range.all() : Range.atMost(to);
    }
    return to == null || Version.NULL.equals(to) ? Range.atLeast(from) : Range.closed(from, to);
}
 

public IntegerValidator(int minValue) {
    this.range = Range.atLeast(minValue);
}
 

@DataProvider
public Iterator<Object[]> getInput1MatchData()
{
    final List<Object[]> list = Lists.newArrayList();

    Range<Integer> range;
    int index;
    boolean match;

    range = Range.singleton(3);
    index = 6;
    match = true;
    list.add(new Object[] { range, index, match });

    range = Range.singleton(6);
    index = 10;
    match = false;
    list.add(new Object[] { range, index, match });

    range = Range.atMost(4);
    index = 8;
    match = true;
    list.add(new Object[] { range, index, match });

    range = Range.atLeast(2);
    index = 10;
    match = true;
    list.add(new Object[] { range, index, match });

    range = Range.closed(2, 9);
    index = 10;
    match = true;
    list.add(new Object[] { range, index, match });

    range = Range.closed(2, 4);
    index = 8;
    match = true;
    list.add(new Object[] { range, index, match });

    return list.iterator();
}
 

private static Range<Long> extractTsConditionInternal(TupleFilter filter, TblColRef colRef) {
    if (filter == null) {
        return Range.all();
    }

    if (filter instanceof LogicalTupleFilter) {
        if (filter.getOperator() == TupleFilter.FilterOperatorEnum.AND) {
            Range<Long> ret = Range.all();
            for (TupleFilter child : filter.getChildren()) {
                Range childRange = extractTsConditionInternal(child, colRef);
                if (childRange != null) {
                    if (ret.isConnected(childRange) && !ret.intersection(childRange).isEmpty()) {
                        ret = ret.intersection(childRange);
                    } else {
                        return null;
                    }
                } else {
                    return null;
                }
            }
            return ret.isEmpty() ? null : ret;
        } else {
            //for conditions like date > DATE'2000-11-11' OR date < DATE '1999-01-01'
            //we will use Ranges.all() rather than two ranges to represent them
            return Range.all();
        }
    }

    if (filter instanceof CompareTupleFilter) {
        CompareTupleFilter compareTupleFilter = (CompareTupleFilter) filter;
        if (compareTupleFilter.getColumn() == null)// column will be null at filters like " 1<>1"
            return Range.all();

        if (compareTupleFilter.getColumn().equals(colRef)) {
            Object firstValue = compareTupleFilter.getFirstValue();
            long t;
            switch (compareTupleFilter.getOperator()) {
            case EQ:
                t = DateFormat.stringToMillis((String) firstValue);
                return Range.closed(t, t);
            case LT:
                t = DateFormat.stringToMillis((String) firstValue);
                return Range.lessThan(t);
            case LTE:
                t = DateFormat.stringToMillis((String) firstValue);
                return Range.atMost(t);
            case GT:
                t = DateFormat.stringToMillis((String) firstValue);
                return Range.greaterThan(t);
            case GTE:
                t = DateFormat.stringToMillis((String) firstValue);
                return Range.atLeast(t);
            case NEQ:
            case IN://not handled for now
                break;
            default:
            }
        }
    }
    return Range.all();
}
 

/**
 * For a given range of devices dpi served by a split, returns the range of resources that are
 * reachable from this split.
 *
 * <p>The reachable resources can cover a be different dpi range than that of the devices since a
 * resource with dpi smaller than the lowest dpi device can be still preferred by that device.
 *
 * @param deviceDpiRange range of device dpis to serve by a given split
 * @param values {@link ConfigValue} objects of a resource under consideration
 * @return range of resource config values that can be matched by any device served by the split
 */
@CheckReturnValue
private ImmutableList<ConfigValue> getReachableConfigValues(
    Range<Integer> deviceDpiRange, ImmutableList<ConfigValue> values, Version bundleVersion) {
  // We are calculating the lowest and highest dpi of the resource that could be matched by the
  // devices from the given deviceDpiRange.
  // We take the lowest eligible dpi device and find the best matching resource for it, similarly
  // at the other end of the servedDpiRange. Because the best matching is monotonic, all resource
  // configs between those extremes and no others could be matched by any device that falls into
  // that dpi range.

  Optional<Integer> lowestResourceDpi = Optional.empty();
  Optional<Integer> highestResourceDpi = Optional.empty();
  if (deviceDpiRange.hasLowerBound()) {
    lowestResourceDpi =
        Optional.of(
            selectBestConfigValue(values, deviceDpiRange.lowerEndpoint(), bundleVersion)
                .getConfig()
                .getDensity());
  }
  if (deviceDpiRange.hasUpperBound()) {
    highestResourceDpi =
        Optional.of(
            selectBestConfigValue(values, deviceDpiRange.upperEndpoint(), bundleVersion)
                .getConfig()
                .getDensity());
  }

  Range<Integer> effectiveDpiRange;

  if (deviceDpiRange.equals(Range.all())) {
    effectiveDpiRange = Range.all();
  } else if (!lowestResourceDpi.isPresent()) {
    effectiveDpiRange = Range.atMost(highestResourceDpi.get());
  } else if (!highestResourceDpi.isPresent()) {
    effectiveDpiRange = Range.atLeast(lowestResourceDpi.get());
  } else {
    effectiveDpiRange = Range.closed(lowestResourceDpi.get(), highestResourceDpi.get());
  }

  return values.stream()
      .filter(configValue -> effectiveDpiRange.contains(configValue.getConfig().getDensity()))
      .collect(toImmutableList());
}