Project: read-roi (GitHub Link)

read-roi

Read ROI files .zip or .roi generated with ImageJ. Code is largely inspired from : http://rsb.info.nih.gov/ij/developer/source/ij/io/RoiDecoder.java.html

Functions

from read_roi import read_roi_file
from read_roi import read_roi_zip

roi = read_roi_file(roi_file_path)

# or

rois = read_roi_zip(roi_zip_path)

Note

Some format specifications are not implemented. See RoiDecoder.java for details.
Most of "normal" ROI files should work.
Feel free to hack it and send me modifications.

Requirements

Python 3.5 and above.

Install

pip install read-roi

Or you can use Anaconda and conda-forge :

conda config --add channels conda-forge
conda install read-roi

License

Under BSD license. See LICENSE.

Authors

Hadrien Mary hadrien.mary@gmail.com

Release a new version

Run tests: pytest -v read_roi/.
Install rever: conda install -y rever.
Run check: rever check.
Bump and release new version: rever VERSION_NUMBER.