import logging logging.basicConfig(format='%(message)s', level=logging.DEBUG) def printDebugInfo(dataHub): if dataHub.args.verbose > 3: info = [] info.append("="*80) for allele in ["ref", "alt"]: for part in dataHub.variant.chromParts(allele): info.append(str(part)) info.append("") logging.debug("\n".join(info)) if dataHub.args.verbose > 9: info = [] info.append("="*80) for allele in ["ref", "alt"]: for part in dataHub.variant.chromParts(allele): info.append(str(part.getSeq())) info.append("") logging.debug("\n".join(info))