from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import os
import operator
import random
import math
import json
import threading
import numpy as np
import tensorflow as tf
import tensorflow_hub as hub
import h5py
from externals.modified_e2e_coref import util
from externals.modified_e2e_coref import coref_ops
from externals.modified_e2e_coref import conll
from externals.modified_e2e_coref import metrics
class CorefModel(object):
def __init__(self, config):
self.config = config
self.context_embeddings = util.EmbeddingDictionary(config["context_embeddings"])
self.head_embeddings = util.EmbeddingDictionary(config["head_embeddings"], maybe_cache=self.context_embeddings)
self.char_embedding_size = config["char_embedding_size"]
self.char_dict = util.load_char_dict(config["char_vocab_path"])
self.max_span_width = config["max_span_width"]
self.genres = { g:i for i,g in enumerate(config["genres"]) }
if config["lm_path"]:
self.lm_file = h5py.File(self.config["lm_path"], "r")
else:
self.lm_file = None
self.lm_layers = self.config["lm_layers"]
self.lm_size = self.config["lm_size"]
self.eval_data = None # Load eval data lazily.
input_props = []
input_props.append((tf.string, [None, None])) # Tokens.
input_props.append((tf.float32, [None, None, self.context_embeddings.size])) # Context embeddings.
input_props.append((tf.float32, [None, None, self.head_embeddings.size])) # Head embeddings.
input_props.append((tf.float32, [None, None, self.lm_size, self.lm_layers])) # LM embeddings.
input_props.append((tf.int32, [None, None, None])) # Character indices.
input_props.append((tf.int32, [None])) # Text lengths.
input_props.append((tf.int32, [None])) # Speaker IDs.
input_props.append((tf.int32, [])) # Genre.
input_props.append((tf.bool, [])) # Is training.
input_props.append((tf.int32, [None])) # Gold starts.
input_props.append((tf.int32, [None])) # Gold ends.
input_props.append((tf.int32, [None])) # Cluster ids.
self.queue_input_tensors = [tf.placeholder(dtype, shape) for dtype, shape in input_props]
dtypes, shapes = zip(*input_props)
queue = tf.PaddingFIFOQueue(capacity=10, dtypes=dtypes, shapes=shapes)
self.enqueue_op = queue.enqueue(self.queue_input_tensors)
self.input_tensors = queue.dequeue()
self.predictions, self.loss = self.get_predictions_and_loss(*self.input_tensors)
self.global_step = tf.Variable(0, name="global_step", trainable=False)
self.reset_global_step = tf.assign(self.global_step, 0)
learning_rate = tf.train.exponential_decay(self.config["learning_rate"], self.global_step,
self.config["decay_frequency"], self.config["decay_rate"], staircase=True)
trainable_params = tf.trainable_variables()
gradients = tf.gradients(self.loss, trainable_params)
gradients, _ = tf.clip_by_global_norm(gradients, self.config["max_gradient_norm"])
optimizers = {
"adam" : tf.train.AdamOptimizer,
"sgd" : tf.train.GradientDescentOptimizer
}
optimizer = optimizers[self.config["optimizer"]](learning_rate)
self.train_op = optimizer.apply_gradients(zip(gradients, trainable_params), global_step=self.global_step)
def start_enqueue_thread(self, session):
with open(self.config["train_path"]) as f:
train_examples = [json.loads(jsonline) for jsonline in f.readlines()]
def _enqueue_loop():
while True:
random.shuffle(train_examples)
for example in train_examples:
tensorized_example = self.tensorize_example(example, is_training=True)
feed_dict = dict(zip(self.queue_input_tensors, tensorized_example))
session.run(self.enqueue_op, feed_dict=feed_dict)
enqueue_thread = threading.Thread(target=_enqueue_loop)
enqueue_thread.daemon = True
enqueue_thread.start()
def restore(self, session):
# Don't try to restore unused variables from the TF-Hub ELMo module.
vars_to_restore = [v for v in tf.global_variables() if "module/" not in v.name]
saver = tf.train.Saver(vars_to_restore)
checkpoint_path = os.path.join(self.config["log_dir"], "model.max.ckpt")
print("Restoring from {}".format(checkpoint_path))
session.run(tf.global_variables_initializer())
saver.restore(session, checkpoint_path)
def load_lm_embeddings(self, doc_key):
if self.lm_file is None:
return np.zeros([0, 0, self.lm_size, self.lm_layers])
file_key = doc_key.replace("/", ":")
group = self.lm_file[file_key]
num_sentences = len(list(group.keys()))
sentences = [group[str(i)][...] for i in range(num_sentences)]
lm_emb = np.zeros([num_sentences, max(s.shape[0] for s in sentences), self.lm_size, self.lm_layers])
for i, s in enumerate(sentences):
lm_emb[i, :s.shape[0], :, :] = s
return lm_emb
def tensorize_mentions(self, mentions):
if len(mentions) > 0:
starts, ends = zip(*mentions)
else:
starts, ends = [], []
return np.array(starts), np.array(ends)
def tensorize_span_labels(self, tuples, label_dict):
if len(tuples) > 0:
starts, ends, labels = zip(*tuples)
else:
starts, ends, labels = [], [], []
return np.array(starts), np.array(ends), np.array([label_dict[c] for c in labels])
def tensorize_example(self, example, is_training):
clusters = example["clusters"]
gold_mentions = sorted(tuple(m) for m in util.flatten(clusters))
gold_mention_map = {m:i for i,m in enumerate(gold_mentions)}
cluster_ids = np.zeros(len(gold_mentions))
for cluster_id, cluster in enumerate(clusters):
for mention in cluster:
cluster_ids[gold_mention_map[tuple(mention)]] = cluster_id + 1
sentences = example["sentences"]
num_words = sum(len(s) for s in sentences)
speakers = util.flatten(example["speakers"])
assert num_words == len(speakers)
max_sentence_length = max(len(s) for s in sentences)
max_word_length = max(max(max(len(w) for w in s) for s in sentences), max(self.config["filter_widths"]))
text_len = np.array([len(s) for s in sentences])
tokens = [[""] * max_sentence_length for _ in sentences]
context_word_emb = np.zeros([len(sentences), max_sentence_length, self.context_embeddings.size])
head_word_emb = np.zeros([len(sentences), max_sentence_length, self.head_embeddings.size])
char_index = np.zeros([len(sentences), max_sentence_length, max_word_length])
for i, sentence in enumerate(sentences):
for j, word in enumerate(sentence):
tokens[i][j] = word
context_word_emb[i, j] = self.context_embeddings[word]
head_word_emb[i, j] = self.head_embeddings[word]
char_index[i, j, :len(word)] = [self.char_dict[c] for c in word]
tokens = np.array(tokens)
speaker_dict = { s:i for i,s in enumerate(set(speakers)) }
speaker_ids = np.array([speaker_dict[s] for s in speakers])
doc_key = example["doc_key"]
genre = self.genres[doc_key[:2]]
gold_starts, gold_ends = self.tensorize_mentions(gold_mentions)
lm_emb = self.load_lm_embeddings(doc_key)
example_tensors = (tokens, context_word_emb, head_word_emb, lm_emb, char_index, text_len, speaker_ids, genre, is_training, gold_starts, gold_ends, cluster_ids)
if is_training and len(sentences) > self.config["max_training_sentences"]:
return self.truncate_example(*example_tensors)
else:
return example_tensors
def truncate_example(self, tokens, context_word_emb, head_word_emb, lm_emb, char_index, text_len, speaker_ids, genre, is_training, gold_starts, gold_ends, cluster_ids):
max_training_sentences = self.config["max_training_sentences"]
num_sentences = context_word_emb.shape[0]
assert num_sentences > max_training_sentences
sentence_offset = random.randint(0, num_sentences - max_training_sentences)
word_offset = text_len[:sentence_offset].sum()
num_words = text_len[sentence_offset:sentence_offset + max_training_sentences].sum()
tokens = tokens[sentence_offset:sentence_offset + max_training_sentences, :]
context_word_emb = context_word_emb[sentence_offset:sentence_offset + max_training_sentences, :, :]
head_word_emb = head_word_emb[sentence_offset:sentence_offset + max_training_sentences, :, :]
lm_emb = lm_emb[sentence_offset:sentence_offset + max_training_sentences, :, :, :]
char_index = char_index[sentence_offset:sentence_offset + max_training_sentences, :, :]
text_len = text_len[sentence_offset:sentence_offset + max_training_sentences]
speaker_ids = speaker_ids[word_offset: word_offset + num_words]
gold_spans = np.logical_and(gold_ends >= word_offset, gold_starts < word_offset + num_words)
gold_starts = gold_starts[gold_spans] - word_offset
gold_ends = gold_ends[gold_spans] - word_offset
cluster_ids = cluster_ids[gold_spans]
return tokens, context_word_emb, head_word_emb, lm_emb, char_index, text_len, speaker_ids, genre, is_training, gold_starts, gold_ends, cluster_ids
def get_candidate_labels(self, candidate_starts, candidate_ends, labeled_starts, labeled_ends, labels):
same_start = tf.equal(tf.expand_dims(labeled_starts, 1), tf.expand_dims(candidate_starts, 0)) # [num_labeled, num_candidates]
same_end = tf.equal(tf.expand_dims(labeled_ends, 1), tf.expand_dims(candidate_ends, 0)) # [num_labeled, num_candidates]
same_span = tf.logical_and(same_start, same_end) # [num_labeled, num_candidates]
candidate_labels = tf.matmul(tf.expand_dims(labels, 0), tf.to_int32(same_span)) # [1, num_candidates]
candidate_labels = tf.squeeze(candidate_labels, 0) # [num_candidates]
return candidate_labels
def get_dropout(self, dropout_rate, is_training):
return 1 - (tf.to_float(is_training) * dropout_rate)
def coarse_to_fine_pruning(self, top_span_emb, top_span_mention_scores, c):
k = util.shape(top_span_emb, 0)
top_span_range = tf.range(k) # [k]
antecedent_offsets = tf.expand_dims(top_span_range, 1) - tf.expand_dims(top_span_range, 0) # [k, k]
antecedents_mask = antecedent_offsets >= 1 # [k, k]
fast_antecedent_scores = tf.expand_dims(top_span_mention_scores, 1) + tf.expand_dims(top_span_mention_scores, 0) # [k, k]
fast_antecedent_scores += tf.log(tf.to_float(antecedents_mask)) # [k, k]
fast_antecedent_scores += self.get_fast_antecedent_scores(top_span_emb) # [k, k]
_, top_antecedents = tf.nn.top_k(fast_antecedent_scores, c, sorted=False) # [k, c]
top_antecedents_mask = util.batch_gather(antecedents_mask, top_antecedents) # [k, c]
top_fast_antecedent_scores = util.batch_gather(fast_antecedent_scores, top_antecedents) # [k, c]
top_antecedent_offsets = util.batch_gather(antecedent_offsets, top_antecedents) # [k, c]
return top_antecedents, top_antecedents_mask, top_fast_antecedent_scores, top_antecedent_offsets
def distance_pruning(self, top_span_emb, top_span_mention_scores, c):
k = util.shape(top_span_emb, 0)
top_antecedent_offsets = tf.tile(tf.expand_dims(tf.range(c) + 1, 0), [k, 1]) # [k, c]
raw_top_antecedents = tf.expand_dims(tf.range(k), 1) - top_antecedent_offsets # [k, c]
top_antecedents_mask = raw_top_antecedents >= 0 # [k, c]
top_antecedents = tf.maximum(raw_top_antecedents, 0) # [k, c]
top_fast_antecedent_scores = tf.expand_dims(top_span_mention_scores, 1) + tf.gather(top_span_mention_scores, top_antecedents) # [k, c]
top_fast_antecedent_scores += tf.log(tf.to_float(top_antecedents_mask)) # [k, c]
return top_antecedents, top_antecedents_mask, top_fast_antecedent_scores, top_antecedent_offsets
def get_predictions_and_loss(self, tokens, context_word_emb, head_word_emb, lm_emb, char_index, text_len, speaker_ids, genre, is_training, gold_starts, gold_ends, cluster_ids):
self.dropout = self.get_dropout(self.config["dropout_rate"], is_training)
self.lexical_dropout = self.get_dropout(self.config["lexical_dropout_rate"], is_training)
self.lstm_dropout = self.get_dropout(self.config["lstm_dropout_rate"], is_training)
num_sentences = tf.shape(context_word_emb)[0]
max_sentence_length = tf.shape(context_word_emb)[1]
context_emb_list = [context_word_emb]
head_emb_list = [head_word_emb]
if self.config["char_embedding_size"] > 0:
char_emb = tf.gather(tf.get_variable("char_embeddings", [len(self.char_dict), self.config["char_embedding_size"]]), char_index) # [num_sentences, max_sentence_length, max_word_length, emb]
flattened_char_emb = tf.reshape(char_emb, [num_sentences * max_sentence_length, util.shape(char_emb, 2), util.shape(char_emb, 3)]) # [num_sentences * max_sentence_length, max_word_length, emb]
flattened_aggregated_char_emb = util.cnn(flattened_char_emb, self.config["filter_widths"], self.config["filter_size"]) # [num_sentences * max_sentence_length, emb]
aggregated_char_emb = tf.reshape(flattened_aggregated_char_emb, [num_sentences, max_sentence_length, util.shape(flattened_aggregated_char_emb, 1)]) # [num_sentences, max_sentence_length, emb]
context_emb_list.append(aggregated_char_emb)
head_emb_list.append(aggregated_char_emb)
if not self.lm_file:
elmo_module = hub.Module("https://tfhub.dev/google/elmo/2")
lm_embeddings = elmo_module(
inputs={"tokens": tokens, "sequence_len": text_len},
signature="tokens", as_dict=True)
word_emb = lm_embeddings["word_emb"] # [num_sentences, max_sentence_length, 512]
lm_emb = tf.stack([tf.concat([word_emb, word_emb], -1),
lm_embeddings["lstm_outputs1"],
lm_embeddings["lstm_outputs2"]], -1) # [num_sentences, max_sentence_length, 1024, 3]
lm_emb_size = util.shape(lm_emb, 2)
lm_num_layers = util.shape(lm_emb, 3)
with tf.variable_scope("lm_aggregation"):
self.lm_weights = tf.nn.softmax(tf.get_variable("lm_scores", [lm_num_layers], initializer=tf.constant_initializer(0.0)))
self.lm_scaling = tf.get_variable("lm_scaling", [], initializer=tf.constant_initializer(1.0))
flattened_lm_emb = tf.reshape(lm_emb, [num_sentences * max_sentence_length * lm_emb_size, lm_num_layers])
flattened_aggregated_lm_emb = tf.matmul(flattened_lm_emb, tf.expand_dims(self.lm_weights, 1)) # [num_sentences * max_sentence_length * emb, 1]
aggregated_lm_emb = tf.reshape(flattened_aggregated_lm_emb, [num_sentences, max_sentence_length, lm_emb_size])
aggregated_lm_emb *= self.lm_scaling
context_emb_list.append(aggregated_lm_emb)
context_emb = tf.concat(context_emb_list, 2) # [num_sentences, max_sentence_length, emb]
head_emb = tf.concat(head_emb_list, 2) # [num_sentences, max_sentence_length, emb]
context_emb = tf.nn.dropout(context_emb, self.lexical_dropout) # [num_sentences, max_sentence_length, emb]
head_emb = tf.nn.dropout(head_emb, self.lexical_dropout) # [num_sentences, max_sentence_length, emb]
text_len_mask = tf.sequence_mask(text_len, maxlen=max_sentence_length) # [num_sentence, max_sentence_length]
context_outputs = self.lstm_contextualize(context_emb, text_len, text_len_mask) # [num_words, emb]
num_words = util.shape(context_outputs, 0)
genre_emb = tf.gather(tf.get_variable("genre_embeddings", [len(self.genres), self.config["feature_size"]]), genre) # [emb]
sentence_indices = tf.tile(tf.expand_dims(tf.range(num_sentences), 1), [1, max_sentence_length]) # [num_sentences, max_sentence_length]
flattened_sentence_indices = self.flatten_emb_by_sentence(sentence_indices, text_len_mask) # [num_words]
flattened_head_emb = self.flatten_emb_by_sentence(head_emb, text_len_mask) # [num_words]
candidate_starts = tf.tile(tf.expand_dims(tf.range(num_words), 1), [1, self.max_span_width]) # [num_words, max_span_width]
candidate_ends = candidate_starts + tf.expand_dims(tf.range(self.max_span_width), 0) # [num_words, max_span_width]
candidate_start_sentence_indices = tf.gather(flattened_sentence_indices, candidate_starts) # [num_words, max_span_width]
candidate_end_sentence_indices = tf.gather(flattened_sentence_indices, tf.minimum(candidate_ends, num_words - 1)) # [num_words, max_span_width]
candidate_mask = tf.logical_and(candidate_ends < num_words, tf.equal(candidate_start_sentence_indices, candidate_end_sentence_indices)) # [num_words, max_span_width]
flattened_candidate_mask = tf.reshape(candidate_mask, [-1]) # [num_words * max_span_width]
candidate_starts = tf.boolean_mask(tf.reshape(candidate_starts, [-1]), flattened_candidate_mask) # [num_candidates]
candidate_ends = tf.boolean_mask(tf.reshape(candidate_ends, [-1]), flattened_candidate_mask) # [num_candidates]
candidate_sentence_indices = tf.boolean_mask(tf.reshape(candidate_start_sentence_indices, [-1]), flattened_candidate_mask) # [num_candidates]
candidate_cluster_ids = self.get_candidate_labels(candidate_starts, candidate_ends, gold_starts, gold_ends, cluster_ids) # [num_candidates]
candidate_span_emb = self.get_span_emb(flattened_head_emb, context_outputs, candidate_starts, candidate_ends) # [num_candidates, emb]
candidate_mention_scores = self.get_mention_scores(candidate_span_emb) # [k, 1]
candidate_mention_scores = tf.squeeze(candidate_mention_scores, 1) # [k]
k = tf.to_int32(tf.floor(tf.to_float(tf.shape(context_outputs)[0]) * self.config["top_span_ratio"]))
top_span_indices = coref_ops.extract_spans(tf.expand_dims(candidate_mention_scores, 0),
tf.expand_dims(candidate_starts, 0),
tf.expand_dims(candidate_ends, 0),
tf.expand_dims(k, 0),
util.shape(context_outputs, 0),
True) # [1, k]
top_span_indices.set_shape([1, None])
top_span_indices = tf.squeeze(top_span_indices, 0) # [k]
top_span_starts = tf.gather(candidate_starts, top_span_indices) # [k]
top_span_ends = tf.gather(candidate_ends, top_span_indices) # [k]
top_span_emb = tf.gather(candidate_span_emb, top_span_indices) # [k, emb]
top_span_cluster_ids = tf.gather(candidate_cluster_ids, top_span_indices) # [k]
top_span_mention_scores = tf.gather(candidate_mention_scores, top_span_indices) # [k]
top_span_sentence_indices = tf.gather(candidate_sentence_indices, top_span_indices) # [k]
top_span_speaker_ids = tf.gather(speaker_ids, top_span_starts) # [k]
c = tf.minimum(self.config["max_top_antecedents"], k)
if self.config["coarse_to_fine"]:
top_antecedents, top_antecedents_mask, top_fast_antecedent_scores, top_antecedent_offsets = self.coarse_to_fine_pruning(top_span_emb, top_span_mention_scores, c)
else:
top_antecedents, top_antecedents_mask, top_fast_antecedent_scores, top_antecedent_offsets = self.distance_pruning(top_span_emb, top_span_mention_scores, c)
dummy_scores = tf.zeros([k, 1]) # [k, 1]
for i in range(self.config["coref_depth"]):
with tf.variable_scope("coref_layer", reuse=(i > 0)):
top_antecedent_emb = tf.gather(top_span_emb, top_antecedents) # [k, c, emb]
top_antecedent_scores = top_fast_antecedent_scores + self.get_slow_antecedent_scores(top_span_emb, top_antecedents, top_antecedent_emb, top_antecedent_offsets, top_span_speaker_ids, genre_emb) # [k, c]
top_antecedent_weights = tf.nn.softmax(tf.concat([dummy_scores, top_antecedent_scores], 1)) # [k, c + 1]
top_antecedent_emb = tf.concat([tf.expand_dims(top_span_emb, 1), top_antecedent_emb], 1) # [k, c + 1, emb]
attended_span_emb = tf.reduce_sum(tf.expand_dims(top_antecedent_weights, 2) * top_antecedent_emb, 1) # [k, emb]
with tf.variable_scope("f"):
f = tf.sigmoid(util.projection(tf.concat([top_span_emb, attended_span_emb], 1), util.shape(top_span_emb, -1))) # [k, emb]
top_span_emb = f * attended_span_emb + (1 - f) * top_span_emb # [k, emb]
top_antecedent_scores = tf.concat([dummy_scores, top_antecedent_scores], 1) # [k, c + 1]
top_antecedent_cluster_ids = tf.gather(top_span_cluster_ids, top_antecedents) # [k, c]
top_antecedent_cluster_ids += tf.to_int32(tf.log(tf.to_float(top_antecedents_mask))) # [k, c]
same_cluster_indicator = tf.equal(top_antecedent_cluster_ids, tf.expand_dims(top_span_cluster_ids, 1)) # [k, c]
non_dummy_indicator = tf.expand_dims(top_span_cluster_ids > 0, 1) # [k, 1]
pairwise_labels = tf.logical_and(same_cluster_indicator, non_dummy_indicator) # [k, c]
dummy_labels = tf.logical_not(tf.reduce_any(pairwise_labels, 1, keepdims=True)) # [k, 1]
top_antecedent_labels = tf.concat([dummy_labels, pairwise_labels], 1) # [k, c + 1]
loss = self.softmax_loss(top_antecedent_scores, top_antecedent_labels) # [k]
loss = tf.reduce_sum(loss) # []
return [candidate_starts, candidate_ends, candidate_mention_scores, top_span_starts, top_span_ends, top_antecedents, top_antecedent_scores], loss
def get_span_emb(self, head_emb, context_outputs, span_starts, span_ends):
span_emb_list = []
span_start_emb = tf.gather(context_outputs, span_starts) # [k, emb]
span_emb_list.append(span_start_emb)
span_end_emb = tf.gather(context_outputs, span_ends) # [k, emb]
span_emb_list.append(span_end_emb)
span_width = 1 + span_ends - span_starts # [k]
if self.config["use_features"]:
span_width_index = span_width - 1 # [k]
span_width_emb = tf.gather(tf.get_variable("span_width_embeddings", [self.config["max_span_width"], self.config["feature_size"]]), span_width_index) # [k, emb]
span_width_emb = tf.nn.dropout(span_width_emb, self.dropout)
span_emb_list.append(span_width_emb)
if self.config["model_heads"]:
span_indices = tf.expand_dims(tf.range(self.config["max_span_width"]), 0) + tf.expand_dims(span_starts, 1) # [k, max_span_width]
span_indices = tf.minimum(util.shape(context_outputs, 0) - 1, span_indices) # [k, max_span_width]
span_text_emb = tf.gather(head_emb, span_indices) # [k, max_span_width, emb]
with tf.variable_scope("head_scores"):
self.head_scores = util.projection(context_outputs, 1) # [num_words, 1]
span_head_scores = tf.gather(self.head_scores, span_indices) # [k, max_span_width, 1]
span_mask = tf.expand_dims(tf.sequence_mask(span_width, self.config["max_span_width"], dtype=tf.float32), 2) # [k, max_span_width, 1]
span_head_scores += tf.log(span_mask) # [k, max_span_width, 1]
span_attention = tf.nn.softmax(span_head_scores, 1) # [k, max_span_width, 1]
span_head_emb = tf.reduce_sum(span_attention * span_text_emb, 1) # [k, emb]
span_emb_list.append(span_head_emb)
span_emb = tf.concat(span_emb_list, 1) # [k, emb]
return span_emb # [k, emb]
def get_mention_scores(self, span_emb):
with tf.variable_scope("mention_scores"):
return util.ffnn(span_emb, self.config["ffnn_depth"], self.config["ffnn_size"], 1, self.dropout) # [k, 1]
def softmax_loss(self, antecedent_scores, antecedent_labels):
gold_scores = antecedent_scores + tf.log(tf.to_float(antecedent_labels)) # [k, max_ant + 1]
marginalized_gold_scores = tf.reduce_logsumexp(gold_scores, [1]) # [k]
log_norm = tf.reduce_logsumexp(antecedent_scores, [1]) # [k]
return log_norm - marginalized_gold_scores # [k]
def bucket_distance(self, distances):
"""
Places the given values (designed for distances) into 10 semi-logscale buckets:
[0, 1, 2, 3, 4, 5-7, 8-15, 16-31, 32-63, 64+].
"""
logspace_idx = tf.to_int32(tf.floor(tf.log(tf.to_float(distances))/math.log(2))) + 3
use_identity = tf.to_int32(distances <= 4)
combined_idx = use_identity * distances + (1 - use_identity) * logspace_idx
return tf.clip_by_value(combined_idx, 0, 9)
def get_slow_antecedent_scores(self, top_span_emb, top_antecedents, top_antecedent_emb, top_antecedent_offsets, top_span_speaker_ids, genre_emb):
k = util.shape(top_span_emb, 0)
c = util.shape(top_antecedents, 1)
feature_emb_list = []
if self.config["use_metadata"]:
top_antecedent_speaker_ids = tf.gather(top_span_speaker_ids, top_antecedents) # [k, c]
same_speaker = tf.equal(tf.expand_dims(top_span_speaker_ids, 1), top_antecedent_speaker_ids) # [k, c]
speaker_pair_emb = tf.gather(tf.get_variable("same_speaker_emb", [2, self.config["feature_size"]]), tf.to_int32(same_speaker)) # [k, c, emb]
feature_emb_list.append(speaker_pair_emb)
tiled_genre_emb = tf.tile(tf.expand_dims(tf.expand_dims(genre_emb, 0), 0), [k, c, 1]) # [k, c, emb]
feature_emb_list.append(tiled_genre_emb)
if self.config["use_features"]:
antecedent_distance_buckets = self.bucket_distance(top_antecedent_offsets) # [k, c]
antecedent_distance_emb = tf.gather(tf.get_variable("antecedent_distance_emb", [10, self.config["feature_size"]]), antecedent_distance_buckets) # [k, c]
feature_emb_list.append(antecedent_distance_emb)
feature_emb = tf.concat(feature_emb_list, 2) # [k, c, emb]
feature_emb = tf.nn.dropout(feature_emb, self.dropout) # [k, c, emb]
target_emb = tf.expand_dims(top_span_emb, 1) # [k, 1, emb]
similarity_emb = top_antecedent_emb * target_emb # [k, c, emb]
target_emb = tf.tile(target_emb, [1, c, 1]) # [k, c, emb]
pair_emb = tf.concat([target_emb, top_antecedent_emb, similarity_emb, feature_emb], 2) # [k, c, emb]
with tf.variable_scope("slow_antecedent_scores"):
slow_antecedent_scores = util.ffnn(pair_emb, self.config["ffnn_depth"], self.config["ffnn_size"], 1, self.dropout) # [k, c, 1]
slow_antecedent_scores = tf.squeeze(slow_antecedent_scores, 2) # [k, c]
return slow_antecedent_scores # [k, c]
def get_fast_antecedent_scores(self, top_span_emb):
with tf.variable_scope("src_projection"):
source_top_span_emb = tf.nn.dropout(util.projection(top_span_emb, util.shape(top_span_emb, -1)), self.dropout) # [k, emb]
target_top_span_emb = tf.nn.dropout(top_span_emb, self.dropout) # [k, emb]
return tf.matmul(source_top_span_emb, target_top_span_emb, transpose_b=True) # [k, k]
def flatten_emb_by_sentence(self, emb, text_len_mask):
num_sentences = tf.shape(emb)[0]
max_sentence_length = tf.shape(emb)[1]
emb_rank = len(emb.get_shape())
if emb_rank == 2:
flattened_emb = tf.reshape(emb, [num_sentences * max_sentence_length])
elif emb_rank == 3:
flattened_emb = tf.reshape(emb, [num_sentences * max_sentence_length, util.shape(emb, 2)])
else:
raise ValueError("Unsupported rank: {}".format(emb_rank))
return tf.boolean_mask(flattened_emb, tf.reshape(text_len_mask, [num_sentences * max_sentence_length]))
def lstm_contextualize(self, text_emb, text_len, text_len_mask):
num_sentences = tf.shape(text_emb)[0]
current_inputs = text_emb # [num_sentences, max_sentence_length, emb]
for layer in range(self.config["contextualization_layers"]):
with tf.variable_scope("layer_{}".format(layer)):
with tf.variable_scope("fw_cell"):
cell_fw = util.CustomLSTMCell(self.config["contextualization_size"], num_sentences, self.lstm_dropout)
with tf.variable_scope("bw_cell"):
cell_bw = util.CustomLSTMCell(self.config["contextualization_size"], num_sentences, self.lstm_dropout)
state_fw = tf.contrib.rnn.LSTMStateTuple(tf.tile(cell_fw.initial_state.c, [num_sentences, 1]), tf.tile(cell_fw.initial_state.h, [num_sentences, 1]))
state_bw = tf.contrib.rnn.LSTMStateTuple(tf.tile(cell_bw.initial_state.c, [num_sentences, 1]), tf.tile(cell_bw.initial_state.h, [num_sentences, 1]))
(fw_outputs, bw_outputs), _ = tf.nn.bidirectional_dynamic_rnn(
cell_fw=cell_fw,
cell_bw=cell_bw,
inputs=current_inputs,
sequence_length=text_len,
initial_state_fw=state_fw,
initial_state_bw=state_bw)
text_outputs = tf.concat([fw_outputs, bw_outputs], 2) # [num_sentences, max_sentence_length, emb]
text_outputs = tf.nn.dropout(text_outputs, self.lstm_dropout)
if layer > 0:
highway_gates = tf.sigmoid(util.projection(text_outputs, util.shape(text_outputs, 2))) # [num_sentences, max_sentence_length, emb]
text_outputs = highway_gates * text_outputs + (1 - highway_gates) * current_inputs
current_inputs = text_outputs
return self.flatten_emb_by_sentence(text_outputs, text_len_mask)
def get_predicted_antecedents(self, antecedents, antecedent_scores):
predicted_antecedents = []
for i, index in enumerate(np.argmax(antecedent_scores, axis=1) - 1):
if index < 0:
predicted_antecedents.append(-1)
else:
predicted_antecedents.append(antecedents[i, index])
return predicted_antecedents
def get_predicted_clusters(self, top_span_starts, top_span_ends, predicted_antecedents):
mention_to_predicted = {}
predicted_clusters = []
for i, predicted_index in enumerate(predicted_antecedents):
if predicted_index < 0:
continue
assert i > predicted_index
predicted_antecedent = (int(top_span_starts[predicted_index]), int(top_span_ends[predicted_index]))
if predicted_antecedent in mention_to_predicted:
predicted_cluster = mention_to_predicted[predicted_antecedent]
else:
predicted_cluster = len(predicted_clusters)
predicted_clusters.append([predicted_antecedent])
mention_to_predicted[predicted_antecedent] = predicted_cluster
mention = (int(top_span_starts[i]), int(top_span_ends[i]))
predicted_clusters[predicted_cluster].append(mention)
mention_to_predicted[mention] = predicted_cluster
predicted_clusters = [tuple(pc) for pc in predicted_clusters]
mention_to_predicted = { m:predicted_clusters[i] for m,i in mention_to_predicted.items() }
return predicted_clusters, mention_to_predicted
def evaluate_coref(self, top_span_starts, top_span_ends, predicted_antecedents, gold_clusters, evaluator):
gold_clusters = [tuple(tuple(m) for m in gc) for gc in gold_clusters]
mention_to_gold = {}
for gc in gold_clusters:
for mention in gc:
mention_to_gold[mention] = gc
predicted_clusters, mention_to_predicted = self.get_predicted_clusters(top_span_starts, top_span_ends, predicted_antecedents)
evaluator.update(predicted_clusters, gold_clusters, mention_to_predicted, mention_to_gold)
return predicted_clusters
def load_eval_data(self):
if self.eval_data is None:
def load_line(line):
example = json.loads(line)
return self.tensorize_example(example, is_training=False), example
with open(self.config["eval_path"]) as f:
self.eval_data = [load_line(l) for l in f.readlines()]
num_words = sum(tensorized_example[2].sum() for tensorized_example, _ in self.eval_data)
print("Loaded {} eval examples.".format(len(self.eval_data)))
def evaluate(self, session, official_stdout=False):
self.load_eval_data()
coref_predictions = {}
coref_evaluator = metrics.CorefEvaluator()
for example_num, (tensorized_example, example) in enumerate(self.eval_data):
_, _, _, _, _, _, _, _, _, gold_starts, gold_ends, _ = tensorized_example
feed_dict = {i:t for i,t in zip(self.input_tensors, tensorized_example)}
candidate_starts, candidate_ends, candidate_mention_scores, top_span_starts, top_span_ends, top_antecedents, top_antecedent_scores = session.run(self.predictions, feed_dict=feed_dict)
predicted_antecedents = self.get_predicted_antecedents(top_antecedents, top_antecedent_scores)
coref_predictions[example["doc_key"]] = self.evaluate_coref(top_span_starts, top_span_ends, predicted_antecedents, example["clusters"], coref_evaluator)
if example_num % 10 == 0:
print("Evaluated {}/{} examples.".format(example_num + 1, len(self.eval_data)))
summary_dict = {}
conll_results = conll.evaluate_conll(self.config["conll_eval_path"], coref_predictions, official_stdout)
average_f1 = sum(results["f"] for results in conll_results.values()) / len(conll_results)
summary_dict["Average F1 (conll)"] = average_f1
print("Average F1 (conll): {:.2f}%".format(average_f1))
p,r,f = coref_evaluator.get_prf()
summary_dict["Average F1 (py)"] = f
print("Average F1 (py): {:.2f}%".format(f * 100))
summary_dict["Average precision (py)"] = p
print("Average precision (py): {:.2f}%".format(p * 100))
summary_dict["Average recall (py)"] = r
print("Average recall (py): {:.2f}%".format(r * 100))
return util.make_summary(summary_dict), average_f1
