#!/usr/bin/env python
from setuptools import setup, find_packages, Extension
def get_version(string):
""" Parse the version number variable __version__ from a script. """
import re
version_re = r"^__version__ = ['\"]([^'\"]*)['\"]"
version_str = re.search(version_re, string, re.M).group(1)
return version_str
def get_includes():
class Includes:
def __iter__(self):
import pysam
import numpy
return iter(pysam.get_include()+[numpy.get_include()])
def __getitem__(self, i):
return list(self)[i]
return Includes()
def get_defines():
class Defines:
def __iter__(self):
import pysam
return iter(pysam.get_defines())
def __getitem__(self, i):
return list(self)[i]
return Defines()
setup(name="genomeview",
version=get_version(open('genomeview/__init__.py').read()),
description="genomeview",
author="Noah Spies",
packages=find_packages(),
setup_requires=["cython", "pysam", "numpy"],
install_requires=["pysam", "numpy"],
ext_modules = [
Extension("genomeview._quickconsensus",
sources=["genomeview/_quickconsensus.pyx"],
include_dirs=get_includes(),
define_macros=get_defines()
)
],
python_requires=">=3.3"
)
