Infer a tree sequence from genetic variation data
The algorithm, its rationale, and results from testing on simulated and real data are described in the following Nature Genetics paper:
Jerome Kelleher, Yan Wong, Anthony W Wohns, Chaimaa Fadil, Patrick K Albers and Gil McVean (2019) Inferring whole-genome histories in large population datasets. Nature Genetics 51: 1330-1338
Please cite this if you use
tsinfer in your work. Code to reproduce the results in the paper is present in a separate GitHub repository.