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Project: MDT
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MDT-master
Makefile
requirements_tests.txt
containers
Dockerfile.intel
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tests
test_example_data.py
data
components
library_functions
VanGelderenCylindricalRestrictedSignal.py
SSFP.py
__init__.py
__init__.py
__init__.py
__init__.py
requirements.txt
.gitignore
docs
mdt.gui.maps_visualizer.renderers.rst
_dynamic_modules
library_functions.rst
composite_models.rst
batch_profiles.rst
compartment_models.rst
parameters.rst
install.rst
mdt.lib.file_conversions.rst
mdt.gui.model_fit.rst
auto_gen_cli_index.rst
credits.rst
development_ideas.rst
mdt.gui.widgets.design.rst
Makefile
mdt.lib.rst
make.bat
mdt.gui.model_fit.tabs.rst
faq.rst
index_latex.rst
cli_index.rst
mdt.gui.widgets.rst
maps_visualizer.rst
readme_man.rst
mdt.gui.maps_visualizer.design.rst
mcmc_sampling.rst
mdt.gui.maps_visualizer.config_tabs.rst
mdt.visualization.rst
index_man.rst
mdt.gui.model_fit.design.rst
scientific_articles.rst
adding_components.rst
mdt.model_building.parameter_functions.rst
mdt.gui.rst
mdt.models.rst
mdt.gui.maps_visualizer.rst
developer_guidelines.rst
modules.rst
index.rst
conf.py
mdt.component_templates.rst
changelog.rst
configuration.rst
mdt.rst
mdt.cli_scripts.rst
_templates
navigation.html
using_mdt.rst
concepts.rst
_static
figures
noddi_comparison
noddi_comparison_script.py
noddi_comparison.conf
html_favicon.ico
custom.css
mdt.visualization.maps.rst
mdt.model_building.rst
mle_fitting.rst
readme_latex.rst
mdt
__version__.py
models
composite.py
__init__.py
base.py
compartments.py
lib
log_handlers.py
processing
model_fitting.py
model_sampling.py
processing_strategies.py
__init__.py
model_bootstrapping.py
exceptions.py
masking.py
input_data.py
deferred_mappings.py
nifti.py
post_processing.py
components.py
shell_utils.py
batch_utils.py
__init__.py
fsl_sampling_routine.py
file_conversions
__init__.py
npy.py
sorting.py
gui
maps_visualizer
actions.py
renderers
matplotlib_renderer.py
__init__.py
base.py
design
ui_TabMapSpecific.py
ui_MapSpecificOptions.py
ui_save_image_dialog.py
main_rc.py
ui_TabTextual.py
__init__.py
ui_TabGeneral.py
ui_MainWindow.py
config_tabs
tab_textual.py
tab_general.py
__init__.py
tab_map_specific.py
widgets.py
__init__.py
main.py
base.py
__init__.py
utils.py
widgets
design
__init__.py
ui_scientific_number_scroller_widget.py
__init__.py
composite_widgets.py
decorator_widgets.py
model_fit
design
ui_generate_protocol_load_gb_dialog.py
ui_main_gui.py
ui_fit_model_tab.py
ui_optimization_options_dialog.py
ui_generate_protocol_tab.py
main_gui_rc.py
ui_runtime_settings_dialog.py
ui_about_dialog.py
__init__.py
ui_generate_protocol_update_dialog.py
ui_dialog_get_example_data.py
ui_generate_brain_mask_tab.py
ui_generate_roi_mask_tab.py
ui_optimization_extra_data_dialog.py
ui_optimization_extra_data_add_protocol_map_dialog.py
tabs
generate_brain_mask_tab.py
generate_protocol_tab.py
fit_model_tab.py
__init__.py
generate_roi_mask_tab.py
qt_main.py
__init__.py
utils.py
simulations.py
component_templates
library_functions.py
batch_profiles.py
parameters.py
composite_models.py
compartment_models.py
__init__.py
utils.py
base.py
cli_scripts
mdt_create_bvec_bval.py
mdt_view_maps.py
mdt_math_protocol.py
mdt_gui.py
mdt_list_models.py
mdt_init_user_settings.py
mdt_info_img.py
mdt_create_roi_slice.py
mdt_estimate_noise_std.py
mdt_create_protocol.py
mdt_volume_merge.py
mdt_apply_mask.py
MDT.py
mdt_batch_fit.py
__init__.py
mdt_info_protocol.py
mdt_list_devices.py
mdt_create_mask.py
mdt_model_fit.py
mdt_math_img.py
mdt_get_example_data.py
data
qt_designs
Makefile
maps_visualizer
TabTextual.ui
Makefile
TabGeneral.ui
TabMapSpecific.ui
save_image_dialog.ui
MapSpecificOptions.ui
MainWindow.ui
main.qrc
widgets
Makefile
scientific_number_scroller_widget.ui
model_fit
generate_protocol_load_gb_dialog.ui
runtime_settings_dialog.ui
Makefile
generate_protocol_update_dialog.ui
optimization_options_dialog.ui
fit_model_tab.ui
generate_brain_mask_tab.ui
generate_roi_mask_tab.ui
generate_protocol_tab.ui
optimization_extra_data_add_protocol_map_dialog.ui
main_gui.qrc
dialog_get_example_data.ui
optimization_extra_data_dialog.ui
main_gui.ui
about_dialog.ui
components
standard
parameters
free.py
protocol.py
library_functions
physical_diffusion_models.py
distributions.py
tensor_kurtosis.py
SSFP.py
MRIConstants.py
bessel_roots.py
linear_algebra.py
noddi.py
compartment_models
Dot.py
TimeDependentZeppelin.py
AstroCylinders.py
SymmetricNonParametricTensor.py
Zeppelin.py
CylinderGPD.py
Weights.py
SSFP.py
AstroSticks.py
relaxometry.py
GDRCylinders.py
CHARMEDRestricted.py
NODDI.py
SphereGPD.py
S0.py
Stick.py
Tensor.py
PDRCylinders.py
Ball.py
KurtosisTensor.py
Racket.py
composite_models
Kurtosis.py
ActiveAx.py
BallRackets.py
ivim.py
qmt.py
VERDICT.py
SSFP.py
CHARMED.py
relaxometry.py
NODDI.py
s0s.py
Tensor.py
BallSticks.py
AxCaliber.py
batch_profiles
general.py
hcp.py
mdt_example_data
b1k_b2k
b1k_b2k.bvec
b1k_b2k_example_slices_24_38_mask.nii.gz
b1k_b2k.prtcl
b1k_b2k.bval
multishell_b6k_max
multishell_b6k_max.bvec
multishell_b6k_max.prtcl
multishell_b6k_max.bval
multishell_b6k_max_example_slices_24_38_mask.nii.gz
mdt.conf
logo.svg
protocols.py
__init__.py
configuration.py
utils.py
model_building
trees.py
likelihood_functions.py
parameters.py
parameter_functions
numdiff_info.py
transformations.py
__init__.py
priors.py
dependencies.py
__init__.py
utils.py
signal_noise_models.py
model_functions.py
visualization
layouts.py
maps
matplotlib_renderer.py
__init__.py
utils.py
base.py
samples.py
__init__.py
utils.py
dict_conversion.py
MANIFEST.in
tox.ini
requirements_documentation.txt