portugueslab/stytra

stytra-master
- environment.yml
- stytra
  - icons
    - dbOFF.svg
    - camera_flash.svg
    - stop.svg
    - edit_camera.svg
    - stytra.ico
    - stytra_logo.svg
    - edit_tracking.svg
    - autoscale.svg
    - autoscaleOFF.svg
    - edit_protocol.svg
    - tail_plot.svg
    - pause.svg
    - rewind.svg
    - play.svg
    - dbON.svg
    - edit_fish.svg
  - utilities.py
  - hardware
    - __init__.py
    - serial.py
    - video
      - ring_buffer.py
      - write.py
      - cameras
        opencv.py
        avt.py
        basler.py
        __init__.py
        mikrotron.py
        spinnaker.py
        interface.py
        ximea.py
      - __init__.py
  - examples
    - custom_exp.py
    - visual_acuity_exp.py
    - combined_conditional_exp.py
    - custom_trigger_exp.py
    - moving_bg_coordinates.py
    - no_stytra_exp.py
    - serialcomm example.py
    - zmq_trigger_exp.py
    - display_camera_exp.py
    - combined_exp.py
    - stimulus_trigger_exp.py
    - portugues2011_exp.py
    - eye_tracking_exp.py
    - windmill_exp.py
    - camera_record_exp.py
    - looming_exp.py
    - tail_tracking_exp.py
    - most_basic_exp.py
    - gratings_exp.py
    - custom_visual_exp.py
    - imaging_exp.py
    - closed_loop_exp.py
    - custom_tracking_exp.py
    - plot_dynamic_exp.py
    - custom_metadata_exp.py
    - __init__.py
    - zmq_trigger.py
    - flash_exp.py
    - self_calib_cl_exp.py
    - display_opencv_cam.py
    - display_config_cam.py
    - phototaxis.py
    - assets
  - metadata
    - __init__.py
  - offline
    - track_video.py
    - experiment_browser
      - metadata_reader.py
      - metadata_reader_ v2.py
      - folder_viewer.py
      - GUI.py
    - __init__.py
  - collectors
    - accumulators.py
    - namedtuplequeue.py
    - data_collector.py
    - __init__.py
  - gui
    - status_display.py
    - container_windows.py
    - fishplots.py
    - multiscope.py
    - monitor_control.py
    - __init__.py
    - protocol_control.py
    - camera_display.py
    - framerate_viewer.py
    - buttons.py
  - .DS_Store
  - experiments
    - tracking_experiments.py
    - fish_pipelines.py
    - camera_recording_experiment.py
    - .DS_Store
    - __init__.py
  - triggering
    - __init__.py
  - __init__.py
  - tests
    - test_assets
    - test_online_bout_detection.py
    - test_kalman.py
    - test_namedtuplequeue.py
    - __init__.py
    - test_pipeline.py
    - test_z_experiments.py
    - record_stimuli.py
  - stimulation
    - estimators.py
    - stimuli
      - closed_loop.py
      - external.py
      - kinematograms.py
      - relative_bg.py
      - __init__.py
      - TEC_controller_stimuli.py
      - visual.py
      - generic_stimuli.py
      - backgrounds.py
      - conditional.py
      - voltage_stimuli.py
    - __init__.py
    - stimulus_display.py
  - core.py
  - tracking
    - eyes.py
    - tail.py
    - pipelines.py
    - preprocessing.py
    - simple_kalman.py
    - __init__.py
    - online_bouts.py
    - tracking_process.py
    - fish.py
  - calibration
    - __init__.py
- .DS_Store
- CHANGELOG.md
- README.rst
- setup.py
- setup.cfg
- .travis.yml
- .gitignore
- docs
  - Makefile
  - source
    - devdocs
      - 4_parameters_stytra.rst
      - 0_module_desc.rst
      - 1_pipelines.rst
      - 2_triggering_intro.rst
      - 3_data_saving.rst
      - 5_status_messages.rst
    - overview
      - 9_references.rst
      - 3_tracking.rst
      - 0_motivation.rst
      - biblio.bib
      - 7_comparison.rst
      - 2_stimulation_intro.rst
      - 1_library_structure.rst
      - 6_hardware_list.rst
      - 5_external_sync.rst
      - 8_replication.rst
      - 4_closed_loop.rst
    - index.rst
    - conf.py
    - _static
      - custom.css
    - userguide
      - 1_examples_gallery.rst
      - 5_configuring_computer.rst
      - 8_faqs.rst
      - 3_tracking.rst
      - 7_offline.rst
      - 6_coordinate_systems.rst
      - 2_interface.rst
      - 0_install_guide.rst
      - 4_calibration.rst
  - make.bat
  - figures
    - closed_loop.html
    - bout_examples.html
    - portugues2011.svg
    - example_bouts.svg
    - portugues2011_replication.html
    - coordinate_v0_8.svg
    - framerates.svg
    - data_flow.svg
    - imaging_traces.html
    - dataflow_classes.svg
    - imaging.svg
    - logo.svg
  - screenshots
  - hardware_list
    - embedded.csv
    - pictures
    - freely_swimming.csv
- LICENSE.txt
- MANIFEST.in
- tox.ini
- requirements_dev.txt