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Project: stytra (GitHub Link)
  • stytra-master
    • environment.yml
    • stytra
      • icons
        • dbOFF.svg
        • camera_flash.svg
        • stop.svg
        • edit_camera.svg
        • stytra.ico
        • stytra_logo.svg
        • edit_tracking.svg
        • autoscale.svg
        • autoscaleOFF.svg
        • edit_protocol.svg
        • tail_plot.svg
        • pause.svg
        • rewind.svg
        • play.svg
        • dbON.svg
        • edit_fish.svg
      • utilities.py
      • hardware
        • __init__.py
        • serial.py
        • video
          • ring_buffer.py
          • write.py
          • cameras
            • opencv.py
            • avt.py
            • basler.py
            • __init__.py
            • mikrotron.py
            • spinnaker.py
            • interface.py
            • ximea.py
          • __init__.py
      • examples
        • custom_exp.py
        • visual_acuity_exp.py
        • combined_conditional_exp.py
        • custom_trigger_exp.py
        • moving_bg_coordinates.py
        • no_stytra_exp.py
        • serialcomm example.py
        • zmq_trigger_exp.py
        • display_camera_exp.py
        • combined_exp.py
        • stimulus_trigger_exp.py
        • portugues2011_exp.py
        • eye_tracking_exp.py
        • windmill_exp.py
        • camera_record_exp.py
        • looming_exp.py
        • tail_tracking_exp.py
        • most_basic_exp.py
        • gratings_exp.py
        • custom_visual_exp.py
        • imaging_exp.py
        • closed_loop_exp.py
        • custom_tracking_exp.py
        • plot_dynamic_exp.py
        • custom_metadata_exp.py
        • __init__.py
        • zmq_trigger.py
        • flash_exp.py
        • self_calib_cl_exp.py
        • display_opencv_cam.py
        • display_config_cam.py
        • phototaxis.py
        • assets
      • metadata
        • __init__.py
      • offline
        • track_video.py
        • experiment_browser
          • metadata_reader.py
          • metadata_reader_ v2.py
          • folder_viewer.py
          • GUI.py
        • __init__.py
      • collectors
        • accumulators.py
        • namedtuplequeue.py
        • data_collector.py
        • __init__.py
      • gui
        • status_display.py
        • container_windows.py
        • fishplots.py
        • multiscope.py
        • monitor_control.py
        • __init__.py
        • protocol_control.py
        • camera_display.py
        • framerate_viewer.py
        • buttons.py
      • .DS_Store
      • experiments
        • tracking_experiments.py
        • fish_pipelines.py
        • camera_recording_experiment.py
        • .DS_Store
        • __init__.py
      • triggering
        • __init__.py
      • __init__.py
      • tests
        • test_assets
        • test_online_bout_detection.py
        • test_kalman.py
        • test_namedtuplequeue.py
        • __init__.py
        • test_pipeline.py
        • test_z_experiments.py
        • record_stimuli.py
      • stimulation
        • estimators.py
        • stimuli
          • closed_loop.py
          • external.py
          • kinematograms.py
          • relative_bg.py
          • __init__.py
          • TEC_controller_stimuli.py
          • visual.py
          • generic_stimuli.py
          • backgrounds.py
          • conditional.py
          • voltage_stimuli.py
        • __init__.py
        • stimulus_display.py
      • core.py
      • tracking
        • eyes.py
        • tail.py
        • pipelines.py
        • preprocessing.py
        • simple_kalman.py
        • __init__.py
        • online_bouts.py
        • tracking_process.py
        • fish.py
      • calibration
        • __init__.py
    • .DS_Store
    • CHANGELOG.md
    • README.rst
    • setup.py
    • setup.cfg
    • .travis.yml
    • .gitignore
    • docs
      • Makefile
      • source
        • devdocs
          • 4_parameters_stytra.rst
          • 0_module_desc.rst
          • 1_pipelines.rst
          • 2_triggering_intro.rst
          • 3_data_saving.rst
          • 5_status_messages.rst
        • overview
          • 9_references.rst
          • 3_tracking.rst
          • 0_motivation.rst
          • biblio.bib
          • 7_comparison.rst
          • 2_stimulation_intro.rst
          • 1_library_structure.rst
          • 6_hardware_list.rst
          • 5_external_sync.rst
          • 8_replication.rst
          • 4_closed_loop.rst
        • index.rst
        • conf.py
        • _static
          • custom.css
        • userguide
          • 1_examples_gallery.rst
          • 5_configuring_computer.rst
          • 8_faqs.rst
          • 3_tracking.rst
          • 7_offline.rst
          • 6_coordinate_systems.rst
          • 2_interface.rst
          • 0_install_guide.rst
          • 4_calibration.rst
      • make.bat
      • figures
        • closed_loop.html
        • bout_examples.html
        • portugues2011.svg
        • example_bouts.svg
        • portugues2011_replication.html
        • coordinate_v0_8.svg
        • framerates.svg
        • data_flow.svg
        • imaging_traces.html
        • dataflow_classes.svg
        • imaging.svg
        • logo.svg
      • screenshots
      • hardware_list
        • embedded.csv
        • pictures
        • freely_swimming.csv
    • LICENSE.txt
    • MANIFEST.in
    • tox.ini
    • requirements_dev.txt