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• genomeview-master
  • examples
    • example.py
    • data
      • hg002.chr14.vcf.gz
      • hg002.chr14.vcf.gz.tbi
      • pacbio.chr1.bam.bai
      • illumina.chr14.bam
      • chr1_200mb.refseq.sorted.bed.gz.tbi
      • illumina.chr1.bam
      • chr1_200mb.refseq.sorted.bed.gz
      • illumina.chr1.bam.bai
      • 10x.chr14.bam.bai
      • illumina.chr14.bam.bai
      • pacbio.chr14.bam.bai
  • LICENSE
  • test
    • test_main.py
    • test_bed.py
    • test_quick_consensus.py
    • data
      • genes.sorted.bed.gz
      • bed8.bed
      • quick_consensus_test.bam.bai
      • illumina.bam.bai
      • genes.sorted.bed.gz.tbi
      • bed3.bed
    • conftest.py
  • genomeview
    • quickconsensus.py
    • utilities.py
    • bamtrack.py
    • convenience.py
    • axis.py
    • _quickconsensus.pyx
    • export.py
    • __init__.py
    • track.py
    • genomesource.py
    • svg.py
    • graphtrack.py
    • genomeview.py
    • bedtrack.py
    • intervaltrack.py
  • setup.py
  • README.md
  • docs
    • graphs.rst
    • Makefile
    • make.bat
    • images
      • output.svg
    • details.rst
    • advanced_usage.rst
    • convenience.rst
    • axis.rst
    • index.rst
    • conf.py
    • bams.rst
    • rendering.rst

genomeview - a python module for visualizing genomic data

Example jupyter notebook with visualizations inline.

See the documentation on read-the-docs for installation and usage