seqr

Build Status

seqr is a web-based tool for rare disease genomics. This repository contains code that underlies the Broad seqr instance and other seqr deployments.

Technical Overview

seqr consists of the following components:

Install

The seqr production instance runs on Google Kubernetes Engine (GKE) and data is loaded using Google Dataproc Spark clusters.

On-prem installs can be created using docker-compose: Local installs using docker-compose

Updating / Migrating an older seqr Instance

For notes on how to update an older instance, see

Update/Migration Instructions