smallrnaseq is a Python package that integrates some of the standard approaches for convenient pre-processing, quantification and analysis of small RNAs. It includes a command line interface used in conjunction with a configuration file. Hence knowledge of Python is not a necessity for using this software. The aim is to provide convenience but with enough configuration to allow some flexibility. Supported on linux and OSX.
Up to date documentation is at http://smallrnaseq.readthedocs.io
There is a video tutorial at https://youtu.be/m24cuLyTqg0
pip install smallrnaseq
snap install smallrnaseq
See the installation page for more details