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Project: epiScanpy
(GitHub Link)
epiScanpy-master
episcanpy
functions
_load_features.py
__init__.py
_extract_meth.py
count_matrix
_read_meth_file.py
_load_input_file.py
_bld_atac_mtx.py
_features.py
_atac_mtx.py
_extract.py
_bld_met_mtx.py
__init__.py
_load_met_ct_mtx.py
api
tl.py
pl.py
ct.py
functions.py
pp.py
__init__.py
__init__.py
utils.py
settings.py
_version.py
preprocessing
_simple.py
_scanpy_fct.py
_recipe.py
_readimpute.py
_load_matrix.py
_neighbors.py
_extract.py
_load_atac.py
_quality_control.py
__init__.py
_metadata.py
tools
_scanpy_fct.py
_recipe.py
_impute_meth.py
_top_feature_genes.py
_cell_id.py
_find_genes.py
_find_genes2.py
_silhouette.py
_scanpy_fct_features.py
__init__.py
_features_selection.py
logging.py
plotting
_scanpy_plotting.py
_histograms.py
_silhouette.py
_heatmap.py
__init__.py
_scanpy_quality.py
_variable_features.py
.readthedocs.yml
versioneer.py
.editorconfig
README.rst
setup.py
setup.cfg
pytest.ini
requirements.txt
.gitignore
docs
release_notes.rst
basic_usage.rst
Makefile
make.bat
api
index.rst
episcanpy.api.rst
examples.rst
System_Requirements.rst
pictures
tutorials
_build
doctrees
references.doctree
environment.pickle
api
index.doctree
release_notes.doctree
basic_usage.doctree
installation.doctree
examples.doctree
index.doctree
html
references.html
installation.html
.nojekyll
release_notes.html
_sources
index.rst.txt
examples.rst.txt
api
index.rst.txt
basic_usage.rst.txt
index.rst
release_notes.rst.txt
installation.rst.txt
references.rst.txt
searchindex.js
api
index.html
basic_usage.html
.buildinfo
objects.inv
genindex.html
py-modindex.html
index.html
search.html
examples.html
_static
ajax-loader.gif
jquery.js
basic.css
pygments.css
searchtools.js
doctools.js
fonts
fontawesome-webfont.woff2
fontawesome-webfont.woff
fontawesome-webfont.eot
RobotoSlab-Bold.ttf
Lato
lato-bold.woff2
lato-bolditalic.woff2
lato-italic.woff2
lato-regular.woff2
RobotoSlab
roboto-slab-v7-bold.woff2
roboto-slab-v7-regular.eot
roboto-slab-v7-bold.ttf
roboto-slab-v7-bold.eot
roboto-slab-v7-regular.woff
roboto-slab-v7-bold.woff
roboto-slab-v7-regular.ttf
roboto-slab-v7-regular.woff2
Inconsolata.ttf
Inconsolata-Bold.ttf
RobotoSlab-Regular.ttf
fontawesome-webfont.ttf
Inconsolata-Regular.ttf
websupport.js
underscore-1.3.1.js
alabaster.css
js
theme.js
modernizr.min.js
underscore.js
custom.css
css
badge_only.css
custom.css
theme.css
references.rst
requirements.txt
index.rst
conf.py
_templates
autosummary
class.rst
base.rst
_static
css
custom.css
installation.rst
LICENSE.txt
MANIFEST.in