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Project: rapidtide
(GitHub Link)
rapidtide-master
.github
pull_request_template.md
ISSUE_TEMPLATE
feature_request.md
bug_report.md
newrelease_todo
examples
plot_showxcorrx.py
README.txt
dockerbuild
neurodebian.gpg
test.sh
containerops
rapidtide_docker
build.sh
LICENSE
INSTALL.rst
CONTRIBUTING.md
CHANGELOG.md
TODO.md
README.rst
setup.py
VERSION
.notreadthedocs.yml
setup.cfg
.travis.yml
condasetup
rapidtide
corrfitx.py
util.py
OrthoImageItem.py
resample.py
corrpass.py
wiener.py
dlfilter.py
nullcorrpassx.py
nullcorrpass.py
version.py
helper_classes.py
stats.py
corrpassx.py
filter.py
data
examples
src
sim_skip.txt
lfolags.nii.gz
fmri_emptymask.nii.gz
testccorrica
cerebellum_mask.nii.gz
testsimdata
diffmaps
protocol.txt
fmri_mask.nii.gz
testapplydlfilter
sim_lags.nii.gz
sim_mean.nii.gz
tmask.txt
sim_samplerate.txt
simdata_slicetimes.txt
melodic_Tmodes
sim_boldpc.nii.gz
quartermask.nii.gz
sim_mask.nii.gz
excludemask.txt
fmri_mean.nii.gz
testnirs
protocol_3col.txt
other_mask.nii.gz
tmask3.txt
samplerate.txt
ses-060_bold_trunc_prefiltered_func_data_mcf.par
testfmri
cctest
timecourse1.txt
includemask.txt
norefine.txt
lfopct.nii.gz
simmask.nii.gz
timecourse2.txt
starttime.txt
sub-01_ses-060_task-rest_run-001_bold_prefiltered_func_data_mcf.par
sim_starttime.txt
testhappy
dst
.placeholder
scripts
gensimbold
dofit
sgsr_vs_dgsr
bipolar
quick
checksim
models
model_serdar
model_meta.json
model.h5
model_serdar2
model_meta.json
model.h5
model_revised
model_meta.json
reference
ATTbasedFlowTerritories_split_2mm_mask.nii.gz
ATTbasedFlowTerritories_split_2mm.nii.gz
ASPECTS_nlin_asym_09c_2mm.nii.gz
MNI152_T1_3mm_brain_mask.nii.gz
ASPECTS_nlin_asym_09c_2mm_mask.nii.gz
__init__.py
ASPECTS_3mm_mask.nii.gz
ASPECTS_2mm_mask.nii.gz
ATTbasedFlowTerritories_split_nlin_asym_09c_2mm_mask.nii.gz
ASPECTS_2mm.nii.gz
ASPECTS_3mm.nii.gz
ATTbasedFlowTerritories_split_nlin_asym_09c_2mm.nii.gz
ATTbasedFlowTerritories_split_regions.txt
ASPECTS_regions.txt
io.py
__init__.py
experimental
highresmotion
hcpinputlist
micccnn.sh
dotraining
harmonogram
plaidtest
hcpoutputlist
filterhcp
gpucnn.sh
shortpleth.txt
train
dofiltering
workflows
rapidtide2x.py
rapidtide2x_trans.py
parser_funcs.py
rapidtideX.py
__init__.py
showxcorrx.py
happy.py
refine.py
tests
test_simulate.py
test_rapidtide2x_phase1.py
test_doresample.py
test_happy_phase1.py
testtargets
rapidtide2x_phase2target_lagtimes.nii.gz
happy_target_cardfromfmri_dlfiltered_25.0Hz.txt
rapidtide2x_phase2output_MTT.nii.gz
rapidtide2x_phase1target_lagstrengths.nii.gz
rapidtide2x_phase2target_lagsigma.nii.gz
rapidtide2x_phase2target_lagstrengths.nii.gz
happy_target_cardfromfmri_25.0Hz.txt
rapidtide2x_phase1target_lagtimes.nii.gz
rapidtide2x_phase2output_lagtimes.nii.gz
rapidtide2x_phase2output_lagstrengths.nii.gz
happy_target_vesselmask.nii.gz
rapidtide2x_phase2output_lagmask.nii.gz
happy_target_cardfromfmrienv_25.0Hz.txt
rapidtide2x_phase1target_lagsigma.nii.gz
rapidtide2x_phase2target_MTT.nii.gz
rapidtide2x_phase1target_lagmask.nii.gz
happy_target_mask.nii.gz
rapidtide2x_phase2output_lagsigma.nii.gz
rapidtide2x_phase2target_lagmask.nii.gz
rapidtide2x_phase1target_fitcoff.nii.gz
rapidtide2x_phase1target_MTT.nii.gz
test_rapidtide2x_phase2.py
test_mi.py
test_glmpass.py
resetrapidtidetargets
test_io.py
testdata
happy_phase1target_vesselmask.nii.gz
stcorrtest_mask.txt
stcorrtest_delay.txt
stcorrtest_Rvalue.txt
happy_target_vesselmask.nii.gz
rapidtide2x_phase1target_reference_fmrires.txt
happy_phase2output_vesselmask.nii.gz
stcorrtest_pearson.txt
fmri_globalmean.txt
lforegressor.txt
stcorrtest_pvalue.txt
test_timeshift.py
test_proberegressor.py
test_rapidtide2x_phase3.py
test_stcorrelate.py
resettargets
test_valtoindex.py
test_nullcorr.py
test_congrid.py
test_findmaxlag.py
test_spectrogram.py
test_fastresampler.py
runlocaltest
__init__.py
utils.py
test_aliasedcorrelate.py
test_phaseanalysis.py
showkernels
test_correlate.py
test_filter.py
resethappytargets
scripts
threeD
simdata
happy
happy2std
showxy
filttc
fingerprint
physiofreq
rapidtide2x_trans
showxcorrx
endtidalproc
rapidtide_dispatcher
spatialfit
tcfrom3col
histnifti
ccorrica
showtc
rapidtideX
pixelcomp
resamp1tc
aligntcs
applydlfilter
happyx
testhrv
spectrogram
spatialdecomp
linfit
plethquality
histtc
__init__.py
showxcorr
atlastool
showstxcorr
atlasaverage
happywarp
temporaldecomp
rapidtide2
resamplenifti
glmfilt
rapidtide2std
showhist
rapidtide2x
tidepool
multiproc.py
fit.py
tidepoolTemplate_qt5.py
correlate.py
corrfit.py
miscmath.py
tidepoolTemplate.ui
glmpass.py
CODE_OF_CONDUCT.md
requirements.txt
.codecov.yml
Dockerfile
.gitignore
docs
Makefile
make.bat
usage.rst
introduction.rst
sphinxext
github_link.py
api.rst
requirements.txt
index.rst
conf.py
whats_new.rst
_templates
module.rst
class.rst
function.rst
_static
theme_overrides.css
contributing.rst
installation.rst
.dockerignore
MANIFEST.in