kaggle-heart-master
- log.py
- preprocess.py
- quasi_random.py
- dihedral_fast.py
- volume_estimation_layers.py
- ira
  - data_iterators.py
  - data.py
  - predictions_dump.py
  - nn_heart.py
  - pathfinder.py
  - fix_submission.py
  - predict.py
  - train_meta.py
  - logger.py
  - dicom2pkl.py
  - buffering.py
  - train.py
  - slice2roi.py
  - configuration.py
  - utils.py
  - utils_heart.py
  - predict_framework_transfer.py
  - create_validation_split.py
  - configurations
    - gauss_roi_zoom_mask_leaky_after.py
    - gauss_roi10_maxout_seqshift_96.py
    - meta_gauss_roi10_maxout.py
    - gauss_roi_zoom_mask_highway.py
    - meta_gauss_roi_zoom_mask_leaky_after.py
    - gauss_roi_zoom_mask_leaky.py
    - meta_gauss_roi_zoom_mask_highway.py
    - gauss_roi10_big_leaky_after_seqshift.py
    - meta_gauss_roi_zoom_mask_leaky.py
    - ch2_zoom_leaky_after_nomask.py
    - meta_gauss_roi_zoom_big_after_seqshift.py
    - gauss_roi10_maxout.py
    - ch4_zoom_leaky_after_nomask.py
    - meta_gauss_roi10_big_leaky_after_seqshift.py
    - meta_gauss_roi_zoom.py
    - ch2_zoom_leaky_nomask_seqshift.py
    - ch2_roi10_zoom_leaky_after_nomask.py
    - __init__.py
    - meta_gauss_roi10_zoom_mask_leaky_after.py
    - gauss_roi_zoom_big_after_seqshift.py
    - ch4_roi10_zoom_leaky_after_nomask.py
    - meta_gauss_roi10_maxout_seqshift_96.py
    - ch4_zoom_leaky_after_nomask_seqshift.py
    - ch2_maxout_shift_128.py
    - meta_gauss_roi_zoom_big.py
    - gauss_roi10_zoom_mask_leaky_after.py
    - ch2_zoom_leaky_after_maxout.py
    - gauss_roi_zoom.py
    - gauss_roi_zoom_big.py
- merge_predictions.py
- nn_hough.py
- objectives.py
- image_transform.py
- updates.py
- LICENSE
- merge_predictions_jeroen.py
- dihedral.py
- postprocess.py
- dihedral_ops.py
- SETTINGS.json
- highway.py
- predict.py
- data_loader.py
- settings_files
  - SETTINGS_SUB_1.json
  - .SETTINGS_SUB_2.json.swp
  - SETTINGS_SUB_2.json
- disk_access.py
- generate_roi_pkl.py
- layers.py
- deep_learning_layers.py
- buffering.py
- train.py
- configuration.py
- README.md
- utils.py
- generate_metadata_pkl.py
- theano_printer.py
- util_scripts
  - histogram_radii.py
  - check_data_dump.py
  - line_finder.py
  - visualize_projection.py.orig
  - test_shearing.py
  - test_area.py
  - dcm2npy.py
  - pkl2patient.py
  - fix_patientmodel_predictions.py
  - visualize_predictions.py
  - visualize_patient.py
  - sunny2npy.py
  - show_all_plots.py
  - segmentation_labelling.py
  - visualize_errors.py
  - visualize_preprocessing.py
  - dicom2pkl.py
  - detect_outliers.py
  - test_certainty.py
  - test_simul_ch.py
  - create_split.py
  - __init__.py
  - test_area2.py
  - visualize_projection.py
  - test_slice_locationing.py
  - test_zoom.py
  - show_train_plots.py
  - visualize_normscale_preprocessing.py
- paths.py
- .gitignore
- merge_predictions_ira.py
- custom_warnings.py
- compressed_cache.py
- configurations
  - je_4ch2ch_iralayer.py
  - j3_crps5.py
  - j0_mxnet.py
  - je_ss_elucrps_nrmsc_dropoutput.py
  - je_ss_jonisc80small_360_gauss_longer.py
  - j6_sax_skew_zoom.py
  - j6_sax_skew.py
  - j7_meta_sax.py
  - j0_dense9.py
  - je_os_segmentandintegrate_smartsigma_dropout.py
  - je_meta_fixedaggr_joniscale64small_filtered_longer.py
  - je_meta_fixedaggr_jsc80leakyconv_augzoombright_betterdist_short.py
  - j1_weighted7.py
  - je_ss_nrmsc128small_gauss_longer.py
  - je_ss_normscale_patchcontrast_seqshift.py
  - j6_saxb.py
  - j0_iranet6.py
  - je_ss_jonisc80small_360_moredrop.py
  - j5_normscale.py
  - j4_iranet.py
  - je_ss_jonisc80small_360_gauss_longer_augzoombright.py
  - je_ss_jonisc80small_360_gauss_longer_augzoom.py
  - j4_regression.py
  - je_ssdiff_smcrps_nrmsc_500_dropoutput.py.orig
  - j6_2ch_128mm_zoom.py
  - j6_2ch_96mm.py
  - je_os_segmentandintegrate_smartsigma.py
  - je_ss_smcrps_nrmsc200_500_dropnorm.py
  - je_ss_jonisc80_leaky_convroll_augzoombright.py
  - je_ss_smcrps_nrmsc128_500_dropnorm.py
  - je_ss_smcrps_jonisc64_500_dropnorm.py
  - je_profiling.py
  - j0_dense4.py
  - j3_single_slice7b.py
  - je_ss_jonisc64small_360_gauss_longer_augbright.py
  - j2_crps1.py
  - je_os_fixedaggr_relloc_filtered_moredrop.py
  - je_ss_jonisc80small_360.py
  - je_ss_jonisc64small_360_framemax.py
  - j2_single_slice3.py
  - je_os_segmentandintegrate_trainsigmascale.py
  - j6_2ch_gauss.py
  - je_ss_jonisc64_360_leaky.py
  - j4_regression2.py
  - j0_iranet7.py
  - je_ss_smll_nrmsc_noreg.py
  - je_os_fixedaggr_framemax_reg.py
  - j6_2ch_128mm_96.py
  - je_ss_agesex.py
  - je_ss_jonisc64_360_leaky_convroll.py
  - default.py
  - je_ss_jonisc80small_360_gauss_longer_moredrop.py
  - je_os_fixedaggr_joniscale64small_360_gauss.py
  - je_ss_nrmsc128_bottleneck.py
  - je_ssdiff_smcrps_nrmsc_500_dropoutput.py
  - je_os_segmentandintegrate_noreg_bn_attention.py
  - je_meta_fixedaggr_jsc64leakyconv.py
  - j0_iranet.py
  - je_ss_smll_nrmsc.py
  - je_ss_jonisc64small_360_gauss_longer.py
  - j0_mxnet1b.py
  - j0_dense.py
  - j6_4ch_128mm.py
  - j0_iranet2.py
  - j3_crps4.py
  - j5_normscale3.py
  - je_os_fixedaggr_leaky.py
  - j6_4ch.py
  - j2_single_slice.py
  - je_ss_jonisc80_leaky_gauss.py
  - j1_weighted8.py
  - je_ss_smcrps_nrmsc200_500_dropoutput.py
  - je_ss_smcrps_nrmsc_500_dropoutput_fix.py
  - je_meta_fixedaggr_jsc64leakyconv_short.py
  - j6_4chb.py
  - j5_ch2.py
  - j6_2chb.py
  - j6_2ch_32mm_specialist_b.py
  - j2_single_slice_vgg_rmse.py
  - j2_single_slice2.py
  - j5_ch4.py
  - je_os_fixedaggr_relloc_filtered_discs.py
  - je_ss_smcrps_nrmsc.py
  - je_meta_fixedaggr_jsc80leakyconv_augzoombright_betterdist.py
  - j0_dense7.py
  - je_meta_fixedaggr_jsc80leakyconv.py
  - je_ss_jonisc128_leaky_convroll.py
  - je_ss_jonisc64_leaky_gauss.py
  - initial_sunny.py
  - je_ss_jonisc80small_360_framemax.py
  - j6_sax_highway.py
  - j1_weighted5_cached.py
  - je_ss_jonisc64small_360_leaky.py
  - j3_slice_highway.py
  - je_ss_lincrps_nrmsc_dropoutput.py
  - je_os_fixedaggr_relloc.py
  - j6_2ch.py
  - je_os_fixedaggr_joniscale80small_augzoombright_betterdist.py
  - je_ssdiff2_smcrps_nrmsc_500_dropoutput.py
  - je_meta_fixedaggr_jsc100leakyconv.py
  - j6_2ch_128mm_zoomb.py
  - je_ss_nrmsc200_gauss_short.py
  - je_os_fixedaggr_joniscale80small_augzoombright.py
  - je_ss_jonisc80small_attention.py
  - j1_weighted2.py
  - je_rsmeta_joniscale64small_360.py
  - j6_2ch_4ch.py
  - je_meta_fixedaggr_joniscale80small_augzoombright.py
  - j2_single_sliceb.py
  - je_ss_normscale.py
  - je_ss_jonisc64small_360.py
  - je_rs_bn_lstm.py
  - j6_2ch_128mm_specialist.py
  - je_meta_fixedaggr_framemax_reg.py
  - j0_mxnet2.py
  - j0_iranet8.py
  - j0_dense6.py
  - j6_2ch_128mm.py
  - je_ss_crps_nrmsc_lowlr.py
  - j6_4ch_32mm_specialist.py
  - je_ss_jonisc80_leaky_convroll.py
  - j0_mxnet1c.py
  - j3_single_slice5.py
  - j6_2ch_32mm_specialist.py
  - j1_jer_sndbx.py
  - j0_iranet5.py
  - je_ss_jonisc64small_sharemaxout.py
  - je_os_segmentandintegrate_noreg_bn.py
  - je_os_segmentandintegrate_noreg.py
  - j6_sax_96.py
  - je_ss_jonisc64small_gauss_longer.py
  - je_ospre_joniscale64small_360.py
  - j2_single_slice4.py
  - je_meta_fixedaggr_jsc80leakyconv_augzoombright_short.py
  - j0_iranet4.py
  - je_ss_jonisc64small_maxout.py
  - j4_iranet2.py
  - je_ss_normscale_patchcontrast.py
  - je_meta_joniscale64small_360.py
  - j0_iranet3.py
  - je_ss_nrmsc200_gauss.py
  - j3_single_slice7.py
  - je_ss_smcrps_nrmsc_500_dropnorm.py
  - je_ss_crps_nrmsc_noreg.py.orig
  - je_meta_fixedaggr_joniscale80small_augzoombright_betterdist.py
  - j0_cnnstack_wide.py
  - je_ss_nrmsc128_maxconv2.py
  - je_ss_smcrps_nrmsc_500_dropoutput.py
  - je_rs_joniscale64small_360.py
  - initial_both.py
  - je_ss_smcrps_jonisc64small_500_dropnorm.py
  - j3_single_slice5b.py
  - j0_dense10.py
  - j2_single_slice_vgg_rmse_nomult.py
  - je_os_fixedaggr_relloc_filtered.py
  - j7_jeroen_ch.py
  - je_ss_smcrps_jonisc100_500_dropnorm.py
  - je_single_slice_vgg_rmse_nomult_longer.py
  - je_ss_nrmsc128_maxconv.py
  - j0_dense3.py
  - j5_normscale4.py
  - j6_sax_skew_zoom_tta.py
  - je_ss_smcrps_nrmsc_sharedense_dropoutput.py
  - je_ss_jonisc100_leaky_convroll.py
  - __init__.py
  - je_4ch2ch_iralayer_timemax.py
  - j1_weighted6.py
  - j1_weighted.py
  - je_ss_jonisc80_framemax.py
  - je_meta_fixedaggr_joniscale64small_360_gauss.py
  - je_meta_fixedaggr_joniscale80small_filtered_longer.py
  - je_ss_jonisc64_gauss.py
  - j0_dense2.py
  - initial_regular.py
  - j7_jeroen_ch_certain.py
  - j7_meta.py
  - j0_mxnet1.py
  - je_os_fixedaggr_rellocframe.py
  - je_meta_fixedaggr_betterdist.py
  - je_meta_fixedaggr_filtered.py
  - j3_crps3.py
  - je_os_joniscale64small_360.py
  - je_ss_jonisc64_leaky_convroll.py
  - je_meta_joniscale64small_360_flipsax.py
  - j8_ira_layer.py
  - j1_weighted3.py
  - j6_4ch_32mm_specialist_b.py
  - j2_single_slice_vgg.py
  - je_test.py
  - je_ss_crps_nrmsc.py
  - je_ss_smcrps_nrmsc128_256_dropnorm.py
  - j6_4ch_128mm_skew.py
  - je_ss_nrmsc128_gauss_short.py
  - je_ss_nrmsc128_gauss.py
  - je_ss_crps_nrmsc_noreg.py
  - je_ss_smcrps_jonisc128_500_dropnorm.py
  - je_ss_smcrps_nrmsc_dropoutput.py
  - j3_single_slice8.py
  - je_rs_lstm.py
  - j6_2ch_4ch_rotate.py
  - j0_dense11.py
  - je_ss_smcrps_nrmsc_500_dropoutput_test.py
  - je_os_segmentandintegrate.py
  - j0_dense8.py
  - je_ss_nrmsc128_bottleneck2.py
  - j5_normscale2.py
  - j2_crps2.py
  - je_rs_bn_rnn.py
  - je_ss_normscale_zmuvcontrast.py
  - j6_4ch_gauss.py
  - j6_sax.py
  - j6_4ch_128mm_specialist.py
  - j2_crps2b.py
  - j1_weighted5.py
  - j0_cnnstack.py
  - j6_sax_residual.py
  - j1_weighted4.py
  - je_ss_smcrps_nrmsc_sharedense500_dropoutput.py
  - je_4ch2ch_iralayer_timemax_rnn.py
  - je_meta_fixedaggr_jsc80leakyconv_augzoombright.py
  - j6_2ch_128mm_skew.py
  - j3_single_slice6.py
  - je_ss_crps_nrmsc_highlr.py
  - j0_dense5.py
  - je_os_segmentandintegrate_trainscale.py
- other
  - hist_nr_slices.txt
  - metadata_keys.txt
- validation_set.py

kaggle-heart

Second place solution for the Second Annual Data Science Bowl competition on Kaggle

More information can be found on http://irakorshunova.github.io/2016/03/15/heart.html, http://317070.github.io/heart and in documentation.pdf.

For a step-by-step guide on how to generate our two final submissions, please see the appendix of the documentation.