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Project: simnibs (GitHub Link)
  • simnibs-master
    • environment_macOS.yml
    • .github
      • workflows
        • test_examples.yml
    • 3RD-PARTY.md
    • .azure-pipelines
      • azure-pipelines-linux.yml
      • azure-pipelines-windows.yml
      • examples.yml
      • pack.yml
      • azure-pipelines-docs.yml
      • quick_tests.yml
      • azure-pipelines-osx.yml
    • .gitattributes
    • setup.py
    • environment_win.yml
    • environment_linux.yml
    • README.md
    • simnibs
      • utils
        • matlab_read.py
        • simnibs_logger.py
        • file_finder.py
        • __init__.py
        • nnav.py
      • resources
        • gmsh-options_simnibsdefault
        • spm12
          • spm_vb_robust.m
          • spm_funcheck.m
          • spm_mrf.m
          • spm_XYZreg_Ex2.m
          • spm_eeg_prep_ui.m
          • spm_dcm_create.m
          • spm_mesh_smooth.m
          • spm_vb_models.m
          • spm_BMS_bor.m
          • spm_mldivide.m
          • spm_multrnd.m
          • spm_add.mexw32
          • spm_dcm_peb.m
          • spm_eeg_prep.m
          • spm_eeg_invert.m
          • spm_eeg_specest_mtmspec.m
          • spm_resels.m
          • spm_check_registration.m
          • spm_dcm_peb_full.m
          • spm_argmax.m
          • spm_voronoi.mexa64
          • spm_mesh_polyhedron.m
          • spm_mvb.m
          • spm_uc_Bonf.m
          • spm_Ncdf.m
          • src
            • spm_hist2.c
            • jsmn.h
            • shoot_optimN.c
            • shoot_boundary.c
            • shoot_multiscale.c
            • spm_mrf.c
            • spm_vol_access.h
            • shoot_optim3d.c
            • shoot_diffeo3d.h
            • shoot_optim3d.h
            • spm_slice_vol.c
            • shoot_expm3.h
            • spm_gamrnd.c
            • spm_vol_utils.c
            • spm_bsplins.c
            • Makefile
            • spm_brainwarp.c
            • spm_mapping.h
            • spm_diffeo.c
            • spm_cat.c
            • spm_sample_vol.c
            • shoot_invdef.c
            • spm_mapping.c
            • spm_global.c
            • bsplines.c
            • spm_getdata.h
            • bsplines.h
            • shoot_dartel.c
            • spm_existfile.c
            • spm_matfuns.c
            • shoot_bsplines.h
            • jsmn.c
            • spm_vol_access.c
            • spm_bwlabel.c
            • spm_krutil.c
            • shoot_boundary.h
            • spm_make_lookup.h
            • spm_vec.c
            • shoot_dartel.h
            • spm_get_lm.c
            • spm_bsplinc.c
            • shoot_regularisers.h
            • spm_project.c
            • spm_voronoi.c
            • Makefile.var
            • spm_render_vol.c
            • spm_unlink.c
            • shoot_expm3.c
            • spm_add.c
            • spm_make_lookup.c
            • bsplinc.c
            • spm_getdata.c
            • bsplins.c
            • shoot_diffeo3d.c
            • shoot_optimN.h
            • spm_mesh_utils.c
            • shoot_regularisers.c
            • spm_dilate_erode.c
            • spm_conv_vol.c
            • shoot_multiscale.h
            • spm_field.c
            • spm_unvec.c
            • spm_datatypes.h
            • spm_jsonread.c
            • spm_hist.c
            • shoot_bsplines.c
            • spm_resels_vol.c
          • spm_lorenz_k.m
          • spm_eeg_inv_get_vol_sens.m
          • spm_vol.m
          • spm_eeg_simulate.m
          • spm_bms_against_null.m
          • spm_dcm_fmri_check.m
          • spm_dicom_dict.txt
          • spm_dcm_peb_bmc.m
          • spm_defaults.m
          • spm_hdm_ui.m
          • spm_dcm_bmc_peb.m
          • spm_compact_svd.m
          • spm_mesh_join.m
          • spm_invBcdf.m
          • spm_cross.m
          • spm_convmtx.m
          • spm_meanby.m
          • spm_eeg_planarchannelset.m
          • spm_eeg_artefact_jump.m
          • spm_hist.mexw32
          • spm_invPcdf.m
          • spm_mvb_G.m
          • spm_funfun.m
          • spm_cov2corr.m
          • spm_eeg_avgfreq.m
          • spm_hist.mexw64
          • spm_preproc_run.m
          • spm_jsonread.mexw32
          • spm_get_closest_affine.m
          • spm_ADEM.m
          • spm_bwlabel.mexa64
          • spm_vb_regionF.m
          • spm_dcm_voi.m
          • spm_mesh_max.m
          • spm_project.m
          • spm_dcm_peb_fit.m
          • spm_render.m
          • spm_fn_reml.m
          • spm_mesh_utils.m
          • spm_uc_clusterFDR.m
          • spm_image.m
          • spm_bsplinc.mexa64
          • spm_bsplins.mexw32
          • spm_gamrnd.mexa64
          • spm_eeg_inv_Mesh2Voxels.m
          • spm_check_installation.m
          • spm_BIDS.m
          • spm_dcm_fmri_csd_DEM.m
          • spm_mesh_area.m
          • spm_dcm_review.m
          • spm_toolbox.m
          • spm_eeg_merge.m
          • spm_fp_fun.m
          • spm_dcm_load.m
          • spm_graph_ui.m
          • spm_FcUtil.m
          • spm_mesh_utils.mexw64
          • spm_field.mexa64
          • spm_mvb_bmc.m
          • spm_csd_fmri_mtf.m
          • rend
          • spm_DEM_eval_diff.m
          • spm_VOI.m
          • spm_cli.m
          • spm_make_contrasts.m
          • spm_pinv.m
          • spm_eeg_average_TF.m
          • spm_eeg_layout3D.m
          • spm_FcnTpl.txt
          • spm_eeg_tf.m
          • spm_global.mexw64
          • spm_extrapolate_def.m
          • spm_eeg_inv_icp.m
          • @nifti
            • subsref.m
            • structn.m
            • nifti.m
            • Contents.m
            • private
              • nifti_stats.m
              • nifti2struc.m
              • findindict.m
              • decode_qform0.m
              • read_hdr_raw.m
              • M2Q.m
              • niftistruc.m
              • empty_hdr.m
              • write_hdr_raw.m
              • Q2M.m
              • mayostruc.m
              • mayo2nifti1.m
              • nifti_stats_mex.c
              • write_extras.m
              • nifti1struc.m
              • getdict.m
              • encode_qform0.m
              • read_hdr.m
              • read_extras.m
              • nifti1.h
            • subsasgn.m
            • create.m
            • display.m
            • disp.m
            • fieldnames.m
          • spm_dcm_bpa.m
          • spm_gamrnd.mexw64
          • spm_sp_reml.m
          • spm_render_vol.mexa64
          • spm_bms_anova_img.m
          • spm_orthviews
            • spm_ov_reorient.m
            • spm_ov_display.m
            • spm_ov_mesh.m
            • spm_ov_contour.m
            • spm_ovhelper_3Dreg.m
            • spm_ov_rgb.m
            • spm_ov_goto_max.m
            • spm_ov_browser.m
            • spm_ov_movie.m
            • spm_ov_save.m
            • spm_ov_roi.m
          • spm_cell_swap.m
          • spm_uc.m
          • spm_uw_estimate.m
          • spm_resels_vol.mexa64
          • spm_cat.mexw64
          • spm_Npdf.m
          • spm_eeg_inv_transform_points.m
          • spm_Menu.fig
          • spm_kron.m
          • spm_LAP_ph.m
          • spm_eeg_invert_EBoptimise.m
          • spm_dcm_post_hoc.m
          • spm_smooth.m
          • spm_vb_contrasts.m
          • spm_detrend.m
          • spm_reml_A.m
          • spm_dcm_simulate.m
          • spm_dcm_fmri_mode_gen.m
          • spm_bwlabel.m
          • spm_slice_timing.m
          • spm_dcm_fit.m
          • spm_read_netcdf.m
          • spm_est_non_sphericity.m
          • spm_results_ui.m
          • spm_eeg_convert_ui.m
          • spm_vb_get_R.m
          • spm_uc_peakFDR.m
          • spm_dcm_fmri_mode.m
          • spm_mesh_geodesic.m
          • spm_eeg_artefact_flat.m
          • spm_SpUtil.m
          • spm_mvb_p.m
          • spm_ROI.m
          • spm_GDEM.m
          • spm_inv.m
          • spm_mesh_utils.mexmaci64
          • spm_eeg_fixpnt.m
          • spm_sample_vol.mexw64
          • spm_nlsi_LS.m
          • spm_zeros.m
          • spm_eeg_artefact_nans.m
          • spm_bsplins.m
          • spm_vb_neighbors.m
          • spm_dcm_specify_ui.m
          • spm_filter.m
          • spm_transverse.m
          • spm_eeg_crop.m
          • batches
            • preproc_fmri_without_anat.m
            • preproc_vbm_simplified.m
            • stats1_within_subject_fmri.m
            • preproc_fmri.m
            • preproc_fmri_simplified.m
            • stats2_between_subject.m
            • preproc_vbm.m
          • spm_existfile.mexw32
          • spm_eeg_collapse_timefreq.m
          • spm_eeg_invert_prepro.m
          • spm_eeg_artefact_zscore.m
          • spm_mesh_project.m
          • spm_voronoi.mexw32
          • spm_DEM_M_set.m
          • spm_int.m
          • spm_slice_vol.mexw32
          • spm_realign.m
          • spm_resels_vol.mexw64
          • spm_bilinear_condition.m
          • spm_ncTcdf.m
          • spm_gx_hdm.m
          • spm_contrasts.m
          • spm_eeg_inv_results_ui.m
          • spm_eeg_ft2spm.m
          • spm_sparse_regression.m
          • spm_eeg_invert_setuppatches.m
          • spm_eeg_locate_channels.m
          • spm_gn_fmin.m
          • spm_get_lm.m
          • spm_eeg_inv_vb_ecd_gui.m
          • spm_getSPM.m
          • spm_jsonread.mexmaci64
          • spm_slice_vol.m
          • spm_conv.m
          • spm_imatrix.m
          • spm_bms_display.m
          • spm_dcm_peb_bmc_fam.m
          • spm_eeg_simulate_frominv.m
          • spm_csd_fmri_mar.m
          • spm_DEM_int.m
          • spm_softmax.m
          • spm_resels_vol.mexmaci64
          • spm_vb_taylor_R.m
          • spm_DFP.m
          • spm_LAP_pg.m
          • spm_ndgrid.m
          • spm_jsonread.mexa64
          • spm_find_pC.m
          • spm_fp_display_nullclines.m
          • spm_ddiff.m
          • spm_vb_init_volume.m
          • spm_smohist.m
          • spm_eeg_inv_vbecd.m
          • spm_get_bbox.m
          • spm_vb_get_Gn.m
          • spm_results_nidm.m
          • spm_nCr.m
          • spm_existfile.m
          • spm_eeg_invert_classic.m
          • spm_P_FDR.m
          • spm_eeg_inv_imag_api.fig
          • spm_timeseries_resample.m
          • spm_dcm_fmri_image.m
          • spm_rmpath.m
          • spm_betaln.m
          • spm_kl_normald.m
          • spm_mvb_cvk2.m
          • spm_spy.m
          • spm_eeg_contrast.m
          • spm_eeg_inv_checkmeshes.m
          • spm_render_vol.mexmaci64
          • spm_hdm_priors.m
          • spm_get_space.m
          • spm_rand_power_law.m
          • spm_field.mexw32
          • spm_invNcdf.m
          • spm_type.m
          • spm_vb_F.m
          • spm_deformations.m
          • spm_eeg_lapmtx.m
          • spm_project.mexa64
          • spm_fs_fmri_csd.m
          • spm_add.mexw64
          • spm_dcm_check_stability.m
          • spm_eeg_inv_visu3D_api.m
          • spm_eeg_regressors_tfphase.m
          • spm_eeg_robust_averaget.m
          • spm_dcm_identify.m
          • spm_DEM_qU.m
          • spm_XYZreg.m
          • spm_ADEM_update.m
          • spm_int_sde.m
          • spm_eeg_epochs.m
          • spm_Fpdf.m
          • spm_hilbert.m
          • spm_swarp.m
          • spm_global.mexmaci64
          • spm_eeg_artefact_heartbeat.m
          • spm_lg_gamma.m
          • spm_eeg_filter.m
          • spm_erode.m
          • spm_Bpdf.m
          • spm_dcm_reduce.m
          • spm_cat_struct.m
          • spm_mvb_cvk_display.m
          • spm_dcm_bma_results.m
          • spm_eeg_morlet.m
          • spm_int_L.m
          • spm_get_lm.mexw64
          • spm_eeg_dipoles_ui.m
          • spm_eeg_regressors_movement_ctf.m
          • spm_length.m
          • spm_design_flexible.m
          • spm_gx_fmri.m
          • spm_nlsi_GN_H.m
          • spm_morlet_conv.m
          • spm_ssm2s.m
          • spm_barh.m
          • spm_unlink.mexw32
          • spm_figure.m
          • spm_vb_glmar.m
          • spm_preproc8.m
          • spm_render_vol.m
          • spm_diag.m
          • spm_bireduce.m
          • spm_uc_FDR.m
          • spm_write_plane.m
          • spm_dicom_essentials.m
          • spm_mvb_ui.m
          • spm_mesh_get_lm.m
          • spm_orthviews.m
          • spm_Volt_W.m
          • spm_krutil.mexa64
          • spm_minmax.m
          • spm_summarise.m
          • spm_int_J.m
          • spm_render_vol.mexw64
          • spm_t2z.m
          • spm_eeg_firstlevel.m
          • spm_cat.m
          • spm_dx_eig.m
          • spm_bsplins.mexw64
          • spm_copy.m
          • spm_vb_Fn.m
          • spm_eeg_inv_vbecd_gui.m
          • spm_bayes2_logbf.m
          • spm_fp_fmin.m
          • spm_eeg_inv_image_display.m
          • spm_get_lm.mexmaci64
          • spm_conv_vol.mexmaci64
          • spm_LAP.m
          • spm_bwlabel.mexw32
          • spm_eeg_inv_vbecd_getLF.m
          • spm_int_D.m
          • spm_est_V.m
          • spm_P.m
          • spm_mesh_utils.mexa64
          • spm_jsonread.m
          • spm_dcm_post_hoc_old.m
          • spm_eeg_review_switchDisplay.m
          • spm_eeg_mask2channels.m
          • spm_dcm_graph.m
          • spm_DesRep.m
          • spm_beta_compare.m
          • spm_dcm_sessions.m
          • tpm
            • labels_Neuromorphometrics.xml
          • spm_MH_reml.m
          • spm_hist.mexa64
          • spm_bsplins.mexa64
          • spm_invGcdf.m
          • spm_eeg_inv_results.m
          • spm_expm.m
          • spm_eeg_inv_mesh_ui.m
          • spm_dicom_metadata.m
          • spm_dcm_delay.m
          • spm_diff.m
          • spm_fx_fmri_linear.m
          • canonical
            • spm_mesh.man
            • iskull_2562.surf.gii
            • cortex_5124.surf.gii
            • oskull_2562.surf.gii
            • scalp_2562.surf.gii
          • spm_ADEM_set.m
          • spm_get_ons.m
          • spm_vb_gamma.m
          • spm_surf.m
          • spm_max.m
          • spm_sp.m
          • spm_DisplayTimeSeries.m
          • spm_get_lm.mexw32
          • spm_get_lm.mexa64
          • spm_vb_w.m
          • spm_deface.m
          • spm_int_E.m
          • spm_existfile.mexmaci64
          • spm_logdet.m
          • spm_eeg_definetrial.m
          • spm_bilinear.m
          • spm_eeg_lgainmat.m
          • spm_diffeo.mexmaci64
          • spm_non_sphericity.m
          • spm_eeg_inv_results_display.m
          • spm_invTcdf.m
          • spm_eeg_cfc.m
          • spm_dcm_contrasts.m
          • spm_get_data.m
          • spm_gx_fmri_linear.m
          • spm_bms_partition.m
          • spm_file.m
          • spm_Gcdf.m
          • spm_bsplins.mexmaci64
          • spm_mesh_to_grid.m
          • spm_P_clusterFDR.m
          • spm_dcm_generate.m
          • compat
            • spm_load_float.m
            • spm_imcalc_ui.m
            • spm_mean_ui.m
            • loadxml.m
            • spm_dirichlet.m
            • spm_eeval.m
            • spm_atranspa.m
            • spm_digamma.m
            • spm_adjmean_ui.m
            • spm_adjmean_fmri_ui.m
            • spm_read_hdr.m
            • spm_spm_ui.m
            • savexml.m
            • spm_chi2_plot.m
            • spm_tbx_config2cfg.m
            • spm_matlab_version_chk.m
            • spm_fMRI_design_show.m
            • spm_resss.m
          • spm_s2csd.m
          • spm_eeg_assemble_priors.m
          • spm_percentile.m
          • spm_DEM.m
          • spm_interp.m
          • spm_jobman.m
          • spm_eeg_inv_forward_ui.m
          • spm_mesh_clusters.m
          • spm_uw_show.m
          • spm_browser.m
          • spm_eeg_artefact_peak2peak.m
          • spm_int_ode.m
          • spm_dcm_connectivity_ui.m
          • spm_voronoi.mexw64
          • spm_eeg_invert_bma.m
          • spm_LAPF.m
          • spm_eeg_inv_group.m
          • spm_mesh_detect.m
          • EEGtemplates
            • ant128.sfp
            • Neuromag306_EEG70.mat
            • CTF275_setup.mat
            • 61channels.mat
            • egi128_GSN_HydroCel.sfp
            • egi128_GSN.sfp
            • ext1020.sfp
            • cnt128.mat
            • fiducials.sfp
            • egi64_GSN_v1_0.sfp
            • biosemi128_FIL_montage.mat
            • egi256_GSN_HydroCel.sfp
            • egi32.sfp
            • egi64_GSN_HydroCel_v1_0.sfp
            • CTF151_setup.mat
            • biosemi128.sfp
            • egi65.mat
            • egi64_GSN_v2_0.sfp
            • egi256_GSN.sfp
            • biosemi64.sfp
          • spm_kl_gamma.m
          • spm_reml_ancova.m
          • spm_mvb_display.m
          • spm_eeg_specest_mtmconvol.m
          • spm_data_read.m
          • spm_hist2.mexw64
          • spm_mesh_utils.mexw32
          • spm_slice_vol.mexa64
          • spm_field.mexmaci64
          • spm_eeg_montage_ui.m
          • spm_phase_shuffle.m
          • spm_kernels.m
          • spm_write_residuals.m
          • spm_mesh_adjacency.m
          • spm_eeg_inv_help.m
          • spm_dcm_KL.m
          • spm_peb_ppi.m
          • spm_check_filename.m
          • spm_eeg_reduce_pca.m
          • spm_dilate_erode.mexw64
          • spm_reml.m
          • spm_existfile.mexw64
          • spm_vb_init_block.m
          • Contents.m
          • spm_unlink.mexa64
          • spm_plot_ci.m
          • spm_uitable.m
          • spm_nlsi_N.m
          • spm_update.m
          • README.txt
          • spm_bms_compare_groups.m
          • spm_project.mexw32
          • spm_sample_vol.mexa64
          • spm_field.mexw64
          • spm_input.m
          • spm_eeg_tf_rescale.m
          • spm_hist.m
          • spm_uncat.m
          • spm_eeg_review_callbacks.m
          • spm_DEM_eval.m
          • spm_dicom_headers.m
          • spm_log_evidence.m
          • spm_bms_display_vox.m
          • spm_Ce.m
          • spm_maff8.m
          • spm_eeg_render.m
          • spm_mvb_estimate.m
          • spm_krutil.mexmaci64
          • @gifti
            • struct.m
            • plot.m
            • subsref.m
            • export.m
            • saveas.m
            • Contents.m
            • private
              • Makefile
              • zstream.mexw64
              • zstream.mexw32
              • zstream.mexa64
              • read_freesurfer_file.m
              • obj_read.m
              • zstream.m
              • getdict.m
              • base64decode.m
              • zstream.c
              • base64encode.m
              • zstream.mexmaci64
              • read_gifti_file.m
              • mvtk_read.m
              • isintent.m
              • mvtk_write.m
            • save.m
            • subsasgn.m
            • gifti.m
            • display.m
            • fieldnames.m
            • isfield.m
          • spm_dicom_header.m
          • spm_jsonwrite.m
          • spm_DFP_plot.m
          • spm_dcm_fmri_csd.m
          • spm_str_manip.m
          • spm_mesh_curvature.m
          • spm_eeg_inv_custom_ui.m
          • spm_vb_logbf.m
          • spm_dcm_bmc.m
          • spm_eeg_regressors.m
          • spm_speye.m
          • config
            • spm_cfg_eeg_bc.m
            • spm_cfg_eeg_inv_optimize.m
            • spm_cfg_dcm_fmri.m
            • spm_cfg_mlb_preamble.m
            • spm_cfg_cdir.m
            • spm_cfg_print.m
            • spm_cfg_eeg_spatial_confounds.m
            • spm_cfg_eeg_average.m
            • spm_cfg_sendmail.m
            • cfg_mlbatch_appcfg.m
            • spm_cfg_eeg_epochs.m
            • spm_cfg_dcm_est.m
            • spm_cfg_ppi.m
            • spm_cfg_eeg_inv_invertiter.m
            • spm_cfg.m
            • spm_cfg_eeg_convert.m
            • spm_cfg_dicom.m
            • spm_cfg_con.m
            • spm_cfg_smooth.m
            • spm_cfg_bms_map.m
            • spm_run_norm.m
            • spm_run_dicom.m
            • spm_cfg_eeg_delete.m
            • spm_cfg_exp_frames.m
            • spm_run_dcm_bms_vis.m
            • spm_cfg_norm.m
            • spm_cfg_eeg_crop.m
            • spm_cfg_eeg_inv_priors.m
            • spm_cfg_dcm_bms.m
            • spm_run_coreg.m
            • spm_cfg_eeg_inv_extract.m
            • spm_cfg_eeg_prepare.m
            • spm_cfg_setlevel.m
            • spm_cfg_eeg_regressors.m
            • spm_run_voi.m
            • spm_cfg_eeg_combineplanar.m
            • spm_cfg_fmri_est.m
            • spm_make_manual.m
            • spm_cfg_md.m
            • spm_cfg_eeg_collapse_timefreq.m
            • spm_cfg_ecat.m
            • spm_run_setlevel.m
            • spm_rewrite_job.m
            • spm_cfg_eeg_copy.m
            • spm_cfg_fmri_data.m
            • spm_cfg_dcm_meeg.m
            • spm_cfg_minc.m
            • spm_cfg_eeg_inv_results.m
            • spm_cfg_model_review.m
            • spm_cfg_cat.m
            • spm_make_standalone.m
            • spm_run_fmri_est.m
            • spm_cfg_eeg_inv_patchdef.m
            • spm_cfg_eeg_downsample.m
            • spm_cfg_st.m
            • spm_run_reorient.m
            • spm_cfg_eeg_inv_headmodel.m
            • spm_cfg_parrec.m
            • spm_cfg_reorient.m
            • spm_cfg_eeg_montage.m
            • spm_run_st.m
            • spm_run_con.m
            • spm_run_bms_vis.m
            • spm_cfg_eeg_contrast.m
            • spm_cfg_disp.m
            • spm_run_tissue_volumes.m
            • spm_cfg_imcalc.m
            • spm_cfg_eeg_avgfreq.m
            • spm_cfg_realign.m
            • spm_run_results.m
            • spm_cfg_eeg_firstlevel.m
            • spm_run_realign.m
            • spm_cfg_render.m
            • spm_cfg_eeg.m
            • spm_cfg_eeg_inv_invert.m
            • spm_cfg_eeg_artefact.m
            • spm_cfg_factorial_design.m
            • spm_cfg_eeg_opmsetup.m
            • spm_cfg_eeg_inv_coregshift.m
            • spm_cfg_eeg_convert2images.m
            • spm_cfg_eeg_inv_post.m
            • spm_cfg_dcm_peb.m
            • spm_cfg_fmri_design.m
            • spm_run_fmri_spec.m
            • spm_cfg_deformations.m
            • spm_cfg_eeg_inv_mix.m
            • spm_cfg_fmri_spec.m
            • spm_run_dcm_bms.m
            • spm_cfg_eeg_channel_selector.m
            • spm_cfg_eeg_correct_sensor_data.m
            • spm_cfg_eeg_inv_headmodelhelmet.m
            • spm_cfg_eeg_merge.m
            • spm_cfg_split.m
            • spm_cfg_eeg_remove_bad_trials.m
            • spm_cfg_results.m
            • spm_cfg_eeg_grandmean.m
            • spm_cfg_eeg_fuse.m
            • spm_run_fmri_data.m
            • spm_cfg_coreg.m
            • spm_cfg_eeg_dipfit.m
            • spm_cfg_mfx.m
            • spm_run_realignunwarp.m
            • spm_cfg_eeg_inv_sensorshift.m
            • spm_cfg_eeg_filter.m
            • spm_cfg_eeg_review.m
            • spm_cfg_eeg_cfc.m
            • spm_cfg_tissue_volumes.m
            • spm_cfg_preproc8.m
            • spm_cfg_bbox.m
            • spm_cfg_checkreg.m
            • spm_cfg_eeg_inv_simulate.m
            • spm_cfg_eeg_tf_rescale.m
            • spm_cfg_realignunwarp.m
            • spm_cfg_voi.m
            • spm_cfg_eeg_tf.m
            • spm_run_factorial_design.m
            • spm_run_bms_map.m
            • spm_cfg_eeg_reduce.m
            • spm_cfg_eeg_avgtime.m
            • spm_run_smooth.m
            • spm_cfg_deface.m
            • spm_cfg_eeg_inv_prepro.m
          • spm_smoothto8bit.m
          • spm_Xpdf.m
          • spm_Ipdf.m
          • spm_bwlabel.mexmaci64
          • spm_dcm_fmri_mar.m
          • spm_coreg.m
          • spm_mip_ui.m
          • spm_eeg_regressors_chandata.m
          • spm_nlsi_GN.m
          • spm_dcm_fmri_csd_data.m
          • spm_inv_phi.m
          • spm_dcm_bmr.m
          • spm_eeg_invert_ui.m
          • spm_morlet.m
          • spm_templates.man
          • spm_dicom_text_to_dict.m
          • spm_fx_lz.m
          • spm_conv_vol.mexw64
          • spm_dem2dcm.m
          • spm_dcm_fmri_csd_results.m
          • spm_Fcdf.m
          • spm_ADEM_M_set.m
          • spm_slice_vol.mexw64
          • spm_eeg_review_uis.m
          • spm_Bcdf.m
          • spm_svd.m
          • spm_dcm_fmri_priors.m
          • spm_inv_spd.m
          • spm_clf.m
          • toolbox
            • OldSeg
              • spm_cfg_preproc.m
              • spm_preproc_write.m
              • spm_prep2sn.m
              • spm_sample_priors.m
              • spm_maff.m
              • spm_invdef.m
              • spm_run_preproc.m
              • spm_load_priors.m
            • spectral
              • spm_mar_gen.m
              • spm_ar_demo_spec.m
              • spm_ar.m
              • spm_csd2mar.m
              • spm_mar2csd.m
              • spm_ccf2mar.m
              • spm_pdc_demo.m
              • spm_csd2ccf.m
              • spm_ar_freq.m
              • spm_spectral_plot.m
              • spm_dtf2gew.m
              • spm_kl_eig_normal.m
              • spm_wavspec_demo.m
              • spm_rar_demo.m
              • spm_csd2coh.m
              • spm_mar_conn.m
              • spm_mar_pred.m
              • spm_rar.m
              • spm_ar_demo_coeff.m
              • spm_granger_demo.m
              • spm_granger.m
              • spm_csd.m
              • spm_mar_spectra.m
              • spm_ar_pred.m
              • spm_mar2ccf.m
              • spm_mar_demo.m
              • chirp.mat
              • spm_mar_prior.m
              • Contents.m
              • spm_wavspec.m
              • spm_ccf2gew.m
              • spm_csd2gew.m
              • spm_mar_spectra_demo.m
              • spm_gew_demo.m
              • spm_dpss.m
              • spm_ccf2csd.m
              • spm_mar.m
              • spm_get_omega.m
              • spm_mmtspec.m
            • mixture
              • spm_rglm_demo.m
              • yrep.mat
              • spm_glm.m
              • spm_mix_demo2d.m
              • spm_boxcars.m
              • spm_samp_gauss.m
              • spm_kmeans.m
              • Contents.m
              • spm_samp_mix.m
              • spm_kmeans1.m
              • spm_mix_demo.m
              • spm_mix_plot1d.m
              • spm_mix.m
              • spm_MNpdf.m
              • spm_mix_demo1d.m
              • spm_rglm.m
              • spm_mix_plot2d.m
            • FieldMap
            • Shoot
              • spm_def2sparse.m
              • spm_shoot_divergence.m
              • spm_shoot3d.m
              • spm_dotprods2.m
              • spm_shoot_blur.m
              • spm_shoot3d_nojac.m
              • spm_shoot_template.m
              • tbx_cfg_shoot.m
              • spm_GPclass.m
              • spm_shoot_update.m
              • covLin.m
              • spm_shoot_kernel.m
              • spm_lincom.m
              • spm_shoot3di.m
              • spm_shoot_defaults.m
              • spm_shoot_warp.m
              • spm_shoot_scalmom.m
              • spm_shoot_greens.m
            • mlm
              • demo_cva_order.m
              • spm_cva_compare.m
              • spm_mlm_makecon.m
              • spm_cva_prob.m
              • spm_mlm_posthoc.m
              • demo_mlm_priors.m
              • demo_vpca_small.m
              • spm_mlm_bayes.m
              • spm_vpca.m
              • spm_pca_order.m
              • demo_pca_order.m
              • spm_vpca_update.m
              • spm_vpca_f.m
              • demo_cva_params.m
              • spm_vpca_init.m
              • demo_vpca_big.m
              • demo_mlm_basic.m
              • demo_mlm_posthoc.m
            • OldNorm
              • spm_normalise.m
              • spm_run_normalise.m
              • spm_brainwarp.m
              • spm_brainwarp.mexw64
              • spm_get_orig_coord.m
              • spm_brainwarp.mexw32
              • spm_cfg_normalise.m
              • spm_brainwarp.mexa64
              • spm_write_sn.m
              • spm_affreg.m
              • spm_brainwarp.mexmaci64
              • spm_normalise_disp.m
            • DEM
              • spm_gx_adem_pursuit.m
              • spm_MDP_DEM.m
              • spm_mc_fx_3.m
              • DEM_demo_MDP_fit.m
              • ADEM_mountaincar_loss_2.m
              • ALAP_demo_attenuation.m
              • spm_soup.m
              • DEM_demo_induced_fMRI.m
              • DEM_demo_hdm.m
              • DEM_demo_DCM_LAP.m
              • DEMO_DCM_PEB_FIT.m
              • spm_dem_search_plot.m
              • spm_dem_set_movie.m
              • ADEM_learning_Q.m
              • FEP_MB_demo.m
              • DEM_demo_song_priors.m
              • DEM_demo_DEM.m
              • spm_DEM_MEG.m
              • DEM_birdsong.m
              • spm_dem_search_movie.m
              • spm_mountaincar_fun.m
              • DEM_demo_convolution.m
              • ADEM_lorenz_surprise.m
              • DEMO_VL.m
              • DEM_demo_hdm_LAP.m
              • spm_mc_fxa_4.m
              • DEM_spatial_deconvolution.m
              • spm_DEM_ERP_demo.m
              • ADEM_salience.m
              • DEMO_BAYES_FACTORS.m
              • spm_MDP_G.m
              • spm_dem_reach_plot.m
              • spm_DEM_movie.m
              • spm_MDP.m
              • spm_MDP_VB_LFP.m
              • spm_ADEM_cue_rt.m
              • ADEM_writing.m
              • spm_fx_adem_salience.m
              • spm_MDP_mountain_car.m
              • DEM_demo_Lorenz.m
              • ADEM_SHC_demo.m
              • spm_MDP_VB.m
              • DEM_lorenz.mat
              • spm_dem_pursuit_movie.m
              • DEM_self_MI_a.m
              • DEM_self_MI_c.m
              • spm_MDP_game_KL.m
              • spm_gx_hdm_sck.m
              • spm_gx_dem_reach.m
              • DEM_demo_DFP.m
              • DEMO_GROUP_PEB.m
              • spm_gx_dem_cue.m
              • spm_dem_initialise.m
              • DEM_demo_MMN.m
              • ADEM_lorenz_entropy.m
              • spm_cost_SHC_fxa.m
              • spm_ho_poly.m
              • DEM_demo_hierarchical_optmisation.m
              • spm_DEM_T.m
              • DEM_I3_and_TS.m
              • DEM_demo_LAP.m
              • DEM_demo_dendrite.m
              • FEP_physics.m
              • DEM_demo_MMN_gen.m
              • spm_mc_fxa_5.m
              • spm_DEM_basis.m
              • spm_mc_fx.m
              • spm_find_internal.m
              • spm_dem_ERP.m
              • ADEM_eyeblink.m
              • spm_gx_adem_write.m
              • BirdSong.mat
              • DFP_demo_double_well.m
              • spm_DEM_play.m
              • DEM_demo_convolution_LAP.m
              • spm_ADEM_set_rt.m
              • DEM_demo_ontology.m
              • DEM_demo_Gabor.m
              • DEMO_DCM_PEB_REC.m
              • DEM_demo_Posner.m
              • ADEM_response_set.m
              • spm_cost_SHC_fx.m
              • DEM_demo_contact_lens.m
              • spm_fx_mountaincar.m
              • spm_dem_reach_x2J.m
              • DEM_demo_duet.m
              • spm_dem_search_trajectory.m
              • spm_cornsweet.m
              • spm_MDP_VB_sleep.m
              • spm_MDP_VB_X.m
              • spm_cost_SHC_path.m
              • spm_ho_gm.m
              • lebi3.wav
              • DEM_demo_MMN_deviance.m
              • DEM_demo_Laplace.m
              • DEM_demo_MDP_rule.m
              • spm_MDP_game_optimism.m
              • DEM_demo_PEB.m
              • spm_gx_SHC.m
              • spm_dem_mdp_movie.m
              • spm_mc_loss_G.m
              • DEMO_SLR.m
              • ADEM_cost_SHC.m
              • DEM_demo_MDP_habits.m
              • spm_fx_dem_cue.m
              • FEP_Manifold.m
              • spm_DEM_M.m
              • spm_gx_adem_reach.m
              • DEM_demo_song_inference.m
              • DEMO_Lindley_paradox.m
              • ADEM_mountaincar_loss_4.m
              • spm_DEM_ButtonDownFcn.m
              • spm_cost_fxa.m
              • spm_fx_dem_pursuit.m
              • DEM_demo.m
              • DEM_demo_connectivity_fMRI.m
              • DEM_demo_MDP_search.m
              • spm_fx_Gabor.m
              • ADEM_reaching.m
              • DEM_demo_EM.m
              • DEM_demo_song_omission.m
              • spm_Manifold_solve.m
              • spm_MDP_VB_trial.m
              • spm_MDP_trust.m
              • FEP_self_entropy.m
              • ADEM_occlusion.m
              • ADEM_lorenz.m
              • DFP_demo_hdm.m
              • spm_fx_dem_write.m
              • ADEM_mountaincar_loss_5.m
              • DEM_demo_double_well.m
              • ADEM_observe.m
              • DEM_demo_Cornsweet.m
              • DEM_demo_Lagrangian_flow.m
              • ADEM_sample_image.m
              • DEMO_BMR_PEB.m
              • spm_MDP_L.m
              • DEM_SOC_paper.m
              • spm_SHC_fx.m
              • DEM_demo_modes_fMRI.m
              • spm_DEM_play_song.m
              • cornsweet_data.mat
              • spm_mc_fx_1.m
              • DEM_demo_doublewell_LAP.m
              • ADEM_mountaincar_loss.m
              • DEM_demo_texture.m
              • spm_mc_fx_4.m
              • spm_fx_adem_pursuit.m
              • spm_gx_dem_pursuit.m
              • DEM_demo_GF_and_KF.m
              • spm_fx_hdm_sck.m
              • ADEM_occulomotor_delays.m
              • spm_SCK.m
              • DEM_demo_MDP_DEM.m
              • spm_mc_fx_5.m
              • DEM_demo_MDP_maze.m
              • DEM_demo_MDP_fit_fields.m
              • DEM_demo_fMRI_PEB.m
              • spm_MDP_DP.m
              • spm_MDP_urn.m
              • spm_gx_dem_write.m
              • spm_gx_Gabor.m
              • spm_fx_mountaincar_Q.m
              • DEM_demo_MDP_reading.m
              • DEM_demo_GLM.m
              • DEM.m
              • spm_mc_fx_2.m
              • spm_gx_adem_cue.m
              • DEM_Q.mat
              • spm_fx_dem_reach.m
              • expmall.m
              • DEM_demo_MDP_X.m
              • ADEM_motor.m
              • spm_dem_reach_movie.m
              • ADEM_learning.m
              • DEM_demo_CM_Lorenz.m
              • DEM_demo_lorenz_LAP.m
              • spm_MDP_game.m
              • DEM_demo_SOC.m
              • spm_MDP_VB_game.m
              • spm_fx_adem_write.m
              • DEM_demo_OU.m
              • DEM_demo_face_inference.m
              • spm_gx_dem_salience.m
              • spm_diff_all.m
              • LAP_DEM.mat
              • spm_DEM_EEG.m
              • DEM_demo_hdm_SCK.m
              • ADEM_pursuit.m
              • spm_dem_cue_movie.m
              • DEM_demo_filtering.m
              • spm_MDP_check.m
              • DEM_cells_cells.m
              • DEMO_DCM_PEB.m
              • spm_dem_occlusion_movie.m
              • DEM_Dendrites.mat
              • spm_fx_adem_cue.m
              • spm_DEM_qC.m
              • DEM_demo_factor_analysis.m
              • DEM_evidence_accumulation.m
              • spm_MDP_plot.m
              • spm_fx_adem_reach.m
              • HDM.mat
              • ADEM_mountaincar_loss_1.m
              • DEM_demo.fig
              • DEM_demo_Bayesian_Model_Reduction.m
              • spm_MDP_VB_ERP.m
              • spm_mc_loss_C.m
              • DEMO_MDP_maze.m
              • spm_mountaincar_movie.m
              • spm_fx_Lagrangian.m
              • spm_MDP_log_evidence.m
              • ADEM_cued_response.m
              • DEM_get_faces.m
              • spm_MDP_offer.m
              • DEM_MDP_decision.m
              • spm_cost_fx.m
              • FEP_fluctuations.m
              • spm_fx_dem_observe.m
              • spm_meta_model.m
              • DEM_cells.m
              • DEM_demo_Lagrangian.m
              • spm_MDP_F.m
              • spm_gx_adem_salience.m
              • spm_mountaincar_Q.m
              • Posner.mat
              • ADEM_mountaincar_loss_3.m
              • DEM_morphogenesis.m
              • spm_fx_dem_salience.m
              • ADEM_visual.m
              • DEM_self_MI_b.m
              • ADEM_cost.m
              • DEM_demo_ALAP.m
              • ADEM_plaid.m
              • spm_salience_map.m
              • DEM_demo_large_fMRI.m
            • DARTEL
              • spm_norm_population.m
              • spm_dartel_invnorm.m
              • spm_dartel_resids.m
              • spm_dartel_warp.m
              • optimN.m
              • spm_dartel_dotprods.m
              • spm_dartel_norm.m
              • tbx_cfg_dartel.m
              • spm_dartel_import.m
              • spm_dartel_norm_fun.m
              • spm_dartel_jacobian.m
              • spm_dartel_template.m
              • optimNn.m
              • spm_dartel_smooth.m
              • optim_compat.m
              • spm_dartel_kernel.m
              • spm_klaff.m
              • dartel3.m
            • SRender
              • tbx_cfg_render.m
              • spm_sextract.m
              • spm_srender.m
            • mci
              • demo-models
                • mci_demo_linear.m
                • mci_demo_logistic.m
                • mci_demo_nmm.m
                • mci_demo_growth.m
                • mci_demo_lds.m
                • mci_demo_rphase.m
                • mci_demo_phase.m
                • mci_demo_approach.m
                • mci_demo_discount.m
              • models
                • discount
                  • mci_discount_act.m
                  • mci_discount_struct.m
                  • mci_discount_like.m
                  • mci_discount_deriv.m
                  • mci_discount_gen.m
                • ramsay
                  • mci_ramsay_gx.m
                  • mci_ramsay_fx.m
                  • mci_ramsay_gen.m
                  • mci_ramsay_struct.m
                • logistic
                  • mci_logistic_gen.m
                  • mci_logistic_deriv.m
                  • mci_logistic_struct.m
                  • mci_logistic_like.m
                  • mci_logistic_act.m
                • approach
                  • mci_approach_gen.m
                  • mci_approach_struct.m
                  • mci_approach_like.m
                  • mci_approach_deriv.m
                • linear
                  • mci_linear_plot_fit.m
                  • mci_linear_gen.m
                  • mci_linear_deriv.m
                  • mci_linear_struct.m
                  • mci_linear_like.m
                  • mci_linear_post.m
                • nmm
                  • mci_nmm_gen.m
                  • mci_nmm_fx_delay.m
                  • mci_nmm_struct.m
                  • mci_nmm_r2p2_fx.m
                  • mci_nmm_r2_gx.m
                  • mci_nmm_r2p2_dfdx.m
                  • mci_nmm_r2p6_fx.m
                  • mci_nmm_r2p2_dfdp.m
                  • mci_nmm_params.m
                • growth
                  • mci_pb_like.m
                  • mci_pb_deriv.m
                  • mci_pb_struct.m
                  • mci_pb_gen.m
                • linsqr
                  • mci_linsqr_gen.m
                  • mci_linsqr_like.m
                  • mci_linsqr_deriv.m
                  • mci_linsqr_struct.m
                • lds
                  • mci_lds_plot_fit.m
                  • mci_lds_plot_params.m
                  • mci_lds_gx.m
                  • mci_lds_fx.m
                  • mci_lds_params.m
                  • mci_lds_gen.m
                  • mci_lds_dfdx.m
                  • mci_lds_par2lat.m
                  • mci_lds_struct.m
                  • mci_lds_lat2par.m
                  • mci_interp_init.m
                  • mci_lds_group_data.m
                  • mci_exp_init.m
                • phase
                  • mci_phase_gx.m
                  • mci_rphase_gen.m
                  • mci_phase_fx.m
                  • mci_rphase_dfdx.m
                  • mci_rphase_struct.m
                  • mci_phase_dfdx.m
                  • mci_phase_init.m
                  • mci_phase_dfdp.m
                  • mci_rphase_fx.m
                  • mci_rphase_dfdp.m
              • Contents.m
              • demo-thermodynamic
                • mci_demo_ramsay_surface.m
                • mci_demo_linsqr.m
                • mci_demo_ti_compare.m
                • mci_demo_ti.m
                • mci_demo_ti_chains.m
                • ramsay-surface.mat
                • mci_demo_ramsay.m
              • mci_setpath.m
              • data
                • pima_tr.txt
                • README
                • pima_te.txt
                • synth_tr.txt
                • synth_te.txt
              • demo-group
                • mci_demo_rfx_logistic.m
                • mci_demo_rfx_nmm.m
                • mci_demo_rfx_linear.m
                • mci_demo_mfx_lds.m
                • mci_demo_rfx_rphase.m
              • gradients
                • spm_mci_sens_init.m
                • spm_mci_joint_grad.m
                • spm_mci_grad_curve.m
                • spm_mci_adjoint.m
                • spm_mci_sens.m
                • spm_mci_flow_sun.m
                • spm_mci_sens_sun.m
                • spm_mci_joint.m
                • mci_compare_setup.m
                • spm_mci_adjoint_sun.m
                • spm_mci_fwd.m
                • spm_mci_adjoint_int.m
                • spm_mci_flow_t.m
              • inference
                • spm_mci_glike_deriv.m
                • spm_mci_postslices.m
                • spm_mci_popdef.m
                • spm_mci_diff.m
                • spm_mci_switch_prep.m
                • spm_mci_report.m
                • spm_mci_obsnoise.m
                • spm_mci_mh_update.m
                • spm_mci_ess.m
                • spm_mci_lgv_vl.m
                • spm_mci_check.m
                • spm_mci_minit.m
                • spm_mci_like_ind.m
                • spm_mci_progress.m
                • spm_mci_glike.m
                • spm_mci_random.m
                • spm_mci_ais.m
                • spm_mci_mvnpost.m
                • spm_mci_update_cov.m
                • spm_mci_mvntest.m
                • spm_mci_ais_single_vl.m
                • spm_wishrnd.m
                • spm_mci_diag.m
                • spm_mci_vw_init.m
                • spm_mci_mh.m
                • spm_mci_mfx.m
                • spm_mvtpdf.m
                • spm_mci_gprior_deriv.m
                • spm_mci_pop.m
                • spm_mci_ais_single.m
                • spm_mci_fixed.m
                • spm_nwcov.m
                • spm_mci_phm.m
                • spm_mci_switch.m
                • spm_nwrnd.m
                • spm_mci_priors.m
                • spm_mci_post.m
                • spm_mci_isvl.m
                • spm_mci_quantiles.m
                • spm_mci_lgv.m
                • spm_mci_stat.m
                • spm_mci_init_flow.m
                • spm_nwpost.m
                • spm_mci_mfx_dynamic.m
              • plotting
                • mci_plot_surface.m
                • mci_plot_noiseSD.m
                • mci_plot_outputs.m
                • mci_plot_dist_multi.m
                • mci_plot_dist.m
              • demo-gradients
                • mci_compare_jacobians.m
                • mci_compare_sensitivities.m
                • mci_compare_forward.m
                • mci_compare_gradients.m
            • cat12
              • cat_stat_TIV.m
              • cat_conf_nonlin_coreg.m
              • cat_vol_laplace3R.c
              • cat_run_job_APP_SPM.m
              • cat_defaults.m
              • cat_conf_stools.m
              • cat_vol_genus0.mexw64
              • cat_parallelize.m
              • cat_vol_slice_overlay_rgb_ui.m
              • cat_io_xml2csv.m
              • cat_vol_eidist.c
              • cat_vbdist.mexglx
              • cat_io_remat.m
              • cat_vol_simgrow.mexa64
              • cat_ornlm.c
              • tricases.h
              • templates_surfaces
                • templates_surfaces.man
              • cat_io_csv.m
              • cat_vol_pbtp.cpp
              • cat_run_job1070.m
              • cat_vol_imcalc.m
              • cat_vol_simgrow.mexglx
              • genus0.c
              • cat_vol_resize.m
              • cat_vol_laplace3.mexmaci64
              • cat_vol_gradient3.mexmaci64
              • cat_surf_results.m
              • cat_io_volctype.m
              • cat_io_handle_pre.m
              • cat_vol_interp3f.cpp
              • cat_vol_simgrow.mexw64
              • cat_vbdist.mexa64
              • cat_io_FreeSurfer.m
              • cat_vol_correct_slice_scaling.m
              • CAT.maci64
                • .DS_Store
              • cat_tst_qa_cleaner.m
              • spm_cat12.m
              • cat_vol_series_align.m
              • cat_run.m
              • cat_io_strrep.m
              • cat_check_system_output.m
              • cat_amap.mexglx
              • cat_surf_avg.m
              • atlases_surfaces
                • atlases_surfaces.man
              • cat_surf_vol2surf.m
              • cat_surf_render2.m
              • cat_batch_long.sh
              • cat_vol_eikonal3.mexw32
              • cat_ornlm.mexmaci
              • cat_io_checkinopt.m
              • cat_stat_nanmean.m
              • cat_vol_atlas.m
              • cat_vol_laplace3.mexw32
              • ornlm_float.c
              • cat_sanlm.mexw64
              • cat_plot_boxplot.m
              • cat_vol_div.m
              • Amap.c
              • cat_io_seg2cgw.m
              • cat_run_job.m
              • cat_vol_reduceRes.m
              • cat_main_gcut_DEV.m
              • cat_vol_ROIval.c
              • cat_vol_downcut.mexw32
              • cat_vol_laplace3.mexw64
              • cat_vol_ROIval.mexmaci64
              • cat_surf_gyrification.m
              • cat_vol_urqio.m
              • cat_vbdist.mexw64
              • cat_surf_surf2roi.m
              • CAT.glnx86
                • .DS_Store
              • cat_surf_info.m
              • cat_io_struct2table.m
              • Contents.txt
              • cat_vol_interp3f.mexw32
              • cat_plot_circular.m
              • cat_vol_morph.m
              • cat_vol_pbtp.mexglx
              • cat_surf_resamp.m
              • cat_tst_CJV.m
              • cat_vol_partvol.m
              • sanlm_float.c
              • genus0.h
              • cat_run_job_APP_final.m
              • cat_vbdist.c
              • kmeans3D.m
              • cat_vol_interp3f.mexa64
              • cat_vol_median3.mexmaci64
              • cat12.m
              • cat_vol_pbtp.mexa64
              • cat_vol_findfiles.m
              • cat_vol_gradient3.mexglx
              • cat_batch_long.m
              • cat_batch_spm.m
              • cat_sanlm.c
              • cat_vol_interp3f.mexglx
              • cat_vol_nonlin_coreg.m
              • cat_conf_stoolsexp.m
              • cat_vol_laplace3R.mexa64
              • cat_vol_genus0.mexa64
              • cat_surf_fun.m
              • cat_vol_median3.mexa64
              • cat_vol_eidist.mexw32
              • cat_surf_createCS.m
              • cat_io_matlabversion.m
              • cat_vol_median3c.mexmaci64
              • cat_vol_laplace3.c
              • cat_main.m
              • cat_vol_simgrow.mexmaci64
              • cat_get_defaults.m
              • cat_stat_showslice_all.m
              • cat_main_gintnormi.m
              • cat_conf_extopts.m
              • cat_stat_factorial_design.m
              • cat_tst_BWPsliceartifact.m
              • Amap.h
              • cat_vol_laplace3R.mexw64
              • templates_1.50mm
                • mori.csv
                • labels_dartel_aal.xml
                • mori.txt
                • aal.csv
                • labels_dartel_ibsr.xml
                • labels_dartel_cobra.xml
                • neuromorphometrics.txt
                • lpba40.txt
                • labels_dartel_lpba40.xml
                • cobra.txt
                • aal.txt
                • .DS_Store
                • templates.man
                • hammers.csv
                • hammers.txt
                • cobra.csv
                • anatomy.txt
                • lpba40.csv
                • labels_dartel_hammers.xml
                • ibsr.txt
                • neuromorphometrics.csv
                • ibsr.csv
                • labels_dartel_mori.xml
                • anatomy.csv
                • labels_dartel_neuromorphometrics.xml
              • cat_vol_laplace3.mexa64
              • cat_spm_smoothto8bit.m
              • cat_vbdist.mexmaci64
              • cat_ornlm.mexa64
              • cat_vol_downcut.mexw64
              • Contents.m
              • cat_vol_eikonal3.c
              • cat_surf_smooth.m
              • cat_roi_fun.m
              • cat_vol_gradient3.mexw32
              • cat_vol_gradient3.mexw64
              • cat_main_gcut.m
              • cat_vol_median3c.mexglx
              • cat_spm_preproc_run.m
              • cat_vol_eidist.mexmaci64
              • cat_tst_staple_multilabels.m
              • cat_vol_gradient3.c
              • cat_vol_median3c.mexa64
              • cat_surf_resamp_freesurfer.m
              • cat_vol_laplace3.mexglx
              • cat_vol_pbt.m
              • vollib.c
              • cat_main_cleanup.m
              • cat_main_registration.m
              • cat_long_multi_run.m
              • cat_io_cprintf.m
              • cat_vol_defs.m
              • cat_ornlm.mexmaci64
              • cat_conf_tools.m
              • cat_sanlm.mexa64
              • cat_surf_calc.m
              • cat_stat_nanstat1d.m
              • cat_vol_median3.mexw64
              • cat_vol_simgrow.mexw32
              • Kmeans.c
              • cat_amap.mexa64
              • cat_vbdist.mexw32
              • cat_vol_eidist.mexa64
              • cat_vol_localstat.mexw64
              • cat_io_cgw2seg.m
              • cat_long_APP.m
              • cat_vol_median3.mexglx
              • cat_display_matlab_PID.m
              • cat_surf_render.m
              • cat_vol_average.m
              • cat_batch_cat.sh
              • cat_vol_genus0.mexmaci64
              • cat_debug.m
              • cat_vol_ctype.m
              • cat_vol_grad.m
              • cat_vol_localstat.mexa64
              • cat_ornlm.m
              • cat_vol_slice_overlay_ui.m
              • cat_vol_localstat.mexmaci64
              • cat_vol_interp3f.mexmaci64
              • cat_conf_opts.m
              • cat_run_oldcatch.m
              • cat_vol_localstat.mexw32
              • cat_vol_downcut.mexa64
              • cat_vol_eikonal3.mexa64
              • cat_vol_sanlm.m
              • INSTALL.txt
              • cat_version.m
              • cat_main_LASs.m
              • cat_vol_laplace3R.mexglx
              • cat_amap.mexw64
              • cat_vol_groupwise_ls.m
              • cat_ornlm.mexw64
              • cat_surf_epivolsurf.m
              • cat_vol_eikonal3.mexmaci64
              • cat_vol_pbtp.mexw64
              • cat_surf_GI3D.m
              • cat_system.m
              • cat_install_atlases.m
              • MrfPrior.c
              • cat_surf_display.m
              • cat_vol_pbtp.mexmaci64
              • slice_overlay.m
              • cat_vol_nanmean3.m
              • cat_vol_simgrow.c
              • cat_io_report.m
              • cat_vol_eikonal3.mexw64
              • cat_stat_marks.m
              • cat_io_3Dto4D.m
              • cat_amap.mexw32
              • cat_spm_affreg.m
              • cat_vol_qa.m
              • cat_run_job_APP_init1070.m
              • cat_amap.mexmaci64
              • cat_vol_genus0.mexglx
              • cat_long_main.m
              • cat_stat_check_SPM.m
              • cat_vol_smooth3X.m
              • cat_roi_roi2surf.m
              • cat_vol_genus0.c
              • cat_stat_nanstd.m
              • cat_stat_analyze_ROIs.m
              • cat_io_writenii.m
              • cat_surf_parameters.m
              • cat_vol_eidist.mexglx
              • cat_tst_calc_kappa.m
              • cat_stat_IQR.m
              • cat_vol_downcut.c
              • cat_vol_eikonal3.mexglx
              • cat_vol_display_label.m
              • cat_sanlm.mexw32
              • cat_stat_nansum.m
              • cat_vol_laplace3R.mexmaci64
              • cat_sanlm.mexmaci64
              • cat_vol_median3c.mexw64
              • cat_vol_isarnlm.m
              • cat_amap.m
              • cat_surf_coregvol2surf.m
              • distribute_to_server.sh
              • cat_vol_eidist.mexw64
              • cat_sanlm.mexglx
              • cat_io_xml.m
              • cat_stat_diff.m
              • cat_stat_spm.m
              • sliderPanel.m
              • cat_conf_long.m
              • tbx_cfg_cat.m
              • cat_ornlm.mexw32
              • cat_stat_calc_stc.m
              • cat_sanlm.m
              • cat_run_newcatch.m
              • cat_vol_set_com.m
              • cat_io_senderrormail.m
              • cat_stat_nanmedian.m
              • cat_io_addwarning.m
              • cat_run_job_APP_init.m
              • cat_vol_downcut.mexglx
              • cat_vol_laplace3R.mexw32
              • cat_vol_localstat.mexglx
              • cat_update.m
              • cat_io_img2nii.m
              • cat_tst_cattest.m
              • cat_io_cmd.m
              • cat_stat_cva_ui.m
              • cat_vol_downcut.mexmaci64
              • cat_vol_approx.m
              • cat_ornlm.mexglx
              • cat_stat_spm2x.m
              • cat_vol_iscaling.m
              • cat_main_gintnorm.m
              • cat_io_updateStruct.m
              • cat_vol_nonlin_coreg_multi_run.m
              • cat_vol_median3c.c
              • cat_amap.c
              • cat_vol_genus0.mexw32
              • cat_stat_polynomial.m
              • cat_vol_slice_overlay2.m
              • cat_surf_rename.m
              • cat_io_mergeStruct.m
              • cat_batch_cat.m
              • cat_vol_median3.c
              • cat_vol_gradient3.mexa64
              • cat_vol_median3.mexw32
              • cat_io_colormaps.m
              • cat_stat_check_cov.m
              • Pve.c
              • cat_surf_max.m
              • cat_vol_iscale.m
              • cat_vol_localstat.c
              • cat_main_LAS.m
              • cat_surf_flipsides.m
              • cat_vol_median3c.mexw32
              • CAT.w32
              • cat_batch_spm.sh
              • cat_vol_slice_overlay.m
              • cat_vol_pbtp.mexw32
              • cat_check.m
          • spm_mrf.mexa64
          • spm_mvb_U.m
          • spm_dcm_sparse.m
          • spm_eeg_inv_visu3D_api.fig
          • spm_eeg_average.m
          • spm_data_hdr_read.m
          • spm_sample_priors8.m
          • spm_dirichlet_exceedance.m
          • spm_vb_beta.m
          • spm_check_orientations.m
          • spm_progress_bar.m
          • spm_dx.m
          • spm_dcm_evidence.m
          • spm_vol_nifti.m
          • spm_DEM_R.m
          • spm_dartel_integrate.m
          • spm_diffeo.mexw64
          • spm_gamrnd.mexmaci64
          • spm_gen_fmri.m
          • spm_eeg_inv_extract_ui.m
          • spm_eeg_reduce.m
          • spm_Ppdf.m
          • spm_csd_fmri_gu.m
          • spm_eeg_inv_forward.m
          • spm_vb_edgeweights.m
          • spm_platform.m
          • spm_mesh_label.m
          • spm_eeg_inv_vbecd_disp.m
          • spm_global.mexa64
          • spm_LAP_iS.m
          • spm_Volterra.m
          • spm_ALAP.m
          • spm_extract_files.m
          • spm_nlsi_Newton.m
          • spm_log_evidence_reduce.m
          • spm_cat.mexmaci64
          • spm_Pcdf.m
          • spm_ADEM_diff.m
          • spm_eeg_wrap_dipfit_vbecd.m
          • spm_eeg_inv_checkforward.m
          • spm_unvec.m
          • spm_dicom_convert.m
          • spm_hrf.m
          • spm_fx_fmri.m
          • spm_bsplinc.m
          • spm_orthpoly.m
          • spm_write_vol.m
          • spm_Ncdf_jdw.m
          • spm_fieldindices.m
          • spm_P_Bonf.m
          • spm_vb_set_priors.m
          • spm_fmin.m
          • spm_eeg_montage.m
          • spm_dcm_fmri_csd_gen.m
          • spm_spm_Bayes.m
          • spm_fileparts.m
          • spm_P_RF.m
          • spm_Icdf.m
          • spm_diag_array.m
          • spm_dcm_peb_rnd_search.m
          • spm_invXcdf.m
          • spm_eeg_inv_imag_api.m
          • spm_bsplinc.mexmaci64
          • spm_Tcdf.m
          • spm_DesMtx.m
          • spm_dilate_erode.mexmaci64
          • spm_voronoi.m
          • spm_DEM_z.m
          • spm_mesh_distmtx.m
          • spm_hist.mexmaci64
          • spm_existfile.mexa64
          • spm_mesh_calc.m
          • spm_vb_roi_basis.m
          • spm_dcm_average.m
          • spm_Tpdf.m
          • spm_get_vc.m
          • spm_vb_ppm_anova.m
          • spm_iwft.m
          • spm_eeg_inv_check.m
          • spm_eeg_modality_ui.m
          • spm_kl_dirichlet.m
          • spm_eeg_spatial_confounds.m
          • spm_vb_alpha.m
          • spm_eeg_inv_fmripriors.m
          • spm_eeg_regressors_tfpower.m
          • spm_eeg_inv_datareg_ui.m
          • spm_z2p.m
          • spm_sample_vol.m
          • spm_resels_vol.mexw32
          • spm_eeg_inv_datareg.m
          • spm_eeg_copy.m
          • spm_render_vol.mexw32
          • spm_nlsi.m
          • spm_eeg_convert.m
          • spm_standalone.m
          • spm_robust_average.m
          • spm_design_contrasts.m
          • spm_uitab.m
          • spm_help.m
          • spm_vb_lambda.m
          • spm_vb_adjacency.m
          • spm_cat.mexa64
          • spm_bms_ttest.m
          • spm_file_template.m
          • spm_eeg_inv_mesh.m
          • spm_field.m
          • spm_BMS_F_smpl.m
          • spm_ECdensity.m
          • spm_DEM_F.m
          • spm_mrdivide.m
          • spm_inline2func.m
          • spm_file_ext.m
          • spm_mrf.mexw32
          • spm_krutil.mexw64
          • spm_conv_vol.mexw32
          • spm_phi_dot.m
          • spm_mesh_resels.m
          • spm_eeg_reduce_cva.m
          • spm_spm.m
          • spm_reslice.m
          • spm_wft.m
          • spm_hanning.m
          • @meeg
            • copy.m
            • move.m
            • repl.m
            • events.m
            • sconfounds.m
            • selectchannels.m
            • sensors.m
            • reload.m
            • indtrial.m
            • fullfile.m
            • ftraw.m
            • badchannels.m
            • indchantype.m
            • montage.m
            • subsref.m
            • nchannels.m
            • modality.m
            • condlist.m
            • nsamples.m
            • meeg.m
            • nfrequencies.m
            • indfrequency.m
            • fttimelock.m
            • fnamedat.m
            • type.m
            • time.m
            • fsample.m
            • indsample.m
            • Contents.m
            • coor2D.m
            • private
              • getset.m
              • checkmeeg.m
              • match_str.m
              • fixpnt.m
              • warning_flexible.m
            • save.m
            • subsasgn.m
            • ntrials.m
            • rmfield.m
            • history.m
            • units.m
            • delete.m
            • display.m
            • chanlabels.m
            • badsamples.m
            • unlink.m
            • isequal.m
            • badtrials.m
            • conditions.m
            • link.m
            • fiducials.m
            • fieldnames.m
            • frequencies.m
            • nconditions.m
            • path.m
            • indchannel.m
            • islinked.m
            • timeonset.m
            • fname.m
            • trialtag.m
            • clone.m
            • blank.m
            • getfield.m
            • size.m
            • trialonset.m
            • isfield.m
            • isempty.m
            • rmdata.m
            • transformtype.m
            • selectdata.m
            • chantype.m
            • check.m
          • spm_get_dataset.m
          • spm_eeg_inv_spatnorm.m
          • spm_vb_get_Ab.m
          • spm_dcm_estimate.m
          • spm_pf.m
          • spm_MH.m
          • spm_atlas.m
          • spm_Dpdf.m
          • spm_bms_test_null.m
          • LICENCE.txt
          • spm_dcm_bma.m
          • spm_mvb_R2.m
          • spm_PEB.m
          • spm_dcm_fmri_nmm.m
          • spm_reorder_contrasts.m
          • spm_diffeo.m
          • spm_eeg_artefact_events.m
          • spm_fx_poly.m
          • spm_mesh_transform.m
          • spm_invIcdf.m
          • spm_bsplinc.mexw32
          • spm_fmri_concatenate.m
          • spm_preproc.m
          • spm_data_hdr_write.m
          • spm_gamrnd.m
          • spm_api_bmc.m
          • spm_bwlabel.mexw64
          • spm_unlink.mexw64
          • spm_DEM_generate.m
          • spm_dcm_display.m
          • spm_vb_incidence.m
          • spm_tests.m
          • spm_dcm_compare.m
          • spm_gamrnd.mexw32
          • spm_add.mexa64
          • spm_eeg_bc.m
          • spm_eeg_read_bsa.m
          • spm_add.m
          • spm_vb_graphcut.m
          • spm_voronoi.mexmaci64
          • spm_changepath.m
          • spm_get_def.m
          • spm_DEM_qH.m
          • spm_dcm_peb_test.m
          • spm_hist2.mexmaci64
          • spm_dcm_graph_functional.m
          • spm_fp_display_density.m
          • spm_Pec_resels.m
          • spm_diffeo.mexw32
          • spm_project.mexw64
          • spm_mesh_normals.m
          • spm_dftmtx.m
          • spm_diffeo.mexa64
          • spm_flip_analyze_images.m
          • spm_clusters.m
          • spm_get_matdim.m
          • spm_dcm_search.m
          • spm_dcm_specify.m
          • spm_perm_mtx.m
          • matlabbatch
            • cfg_findspec.m
            • @cfg_intree
              • display.m
              • disp.m
              • cfg_intree.m
            • @cfg_const
              • subsref.m
              • showdetail.m
              • private
                • mysubs_fields.m
              • subsasgn.m
              • cfg2struct.m
              • cfg_const.m
              • subs_fields.m
              • showdoc.m
            • gencode.m
            • subsasgn_check_valcfg.m
            • cfg_ui_util.m
            • gencode_rvalue.m
            • @cfg_inv_out
              • cfg_inv_out.m
            • subsasgn_check_funhandle.m
            • cfg_mlbatch_appcfg.m
            • @cfg_repeat
              • subsref_job.m
              • update_deps.m
              • gencode_item.m
              • initialise.m
              • subsref.m
              • all_leafs.m
              • showmydoc.m
              • harvest.m
              • showdetail.m
              • subsasgn_job.m
              • subsasgn_check.m
              • cfg_repeat.m
              • checksubs_job.m
              • tagnames.m
              • private
                • mysubs_fields.m
              • expand.m
              • subsasgn.m
              • treepart.m
              • gettag.m
              • all_set.m
              • list.m
              • setval.m
              • fillvals.m
              • cfg2jobsubs.m
              • fieldnames.m
              • cfg2struct.m
              • subs_fields.m
              • tag2cfgsubs.m
              • showdoc.m
              • clearval.m
              • val2def.m
              • all_set_item.m
            • @cfg_branch
              • subsref_job.m
              • update_deps.m
              • initialise.m
              • subsref.m
              • cfg_branch.m
              • all_leafs.m
              • showmydoc.m
              • harvest.m
              • showdetail.m
              • subsasgn_job.m
              • subsasgn_check.m
              • checksubs_job.m
              • tagnames.m
              • private
                • mysubs_fields.m
              • expand.m
              • subsasgn.m
              • treepart.m
              • all_set.m
              • list.m
              • setval.m
              • fillvals.m
              • cfg2jobsubs.m
              • cfg2struct.m
              • subs_fields.m
              • tag2cfgsubs.m
              • showdoc.m
              • clearval.m
              • val2def.m
              • all_set_item.m
            • @cfg_entry
              • cfg_entry.m
              • gencode_item.m
              • subsref.m
              • match.m
              • showdetail.m
              • subsasgn_check.m
              • private
                • mysubs_fields.m
              • subsasgn.m
              • fieldnames.m
              • cfg2struct.m
              • subs_fields.m
              • showdoc.m
            • @cfg_leaf
              • display.m
              • cfg_leaf.m
              • disp.m
            • gencode_substruct.m
            • @cfg_mchoice
              • subsref_job.m
              • update_deps.m
              • gencode_item.m
              • initialise.m
              • subsref.m
              • all_leafs.m
              • showmydoc.m
              • harvest.m
              • showdetail.m
              • subsasgn_job.m
              • subsasgn_check.m
              • checksubs_job.m
              • tagnames.m
              • cfg_mchoice.m
              • private
                • mysubs_fields.m
              • expand.m
              • subsasgn.m
              • treepart.m
              • all_set.m
              • list.m
              • setval.m
              • fillvals.m
              • cfg2jobsubs.m
              • fieldnames.m
              • cfg2struct.m
              • subs_fields.m
              • tag2cfgsubs.m
              • showdoc.m
              • clearval.m
              • val2def.m
              • all_set_item.m
            • examples
              • cfg_example_run_add1.m
              • cfg_example_cumsum1.m
              • cfg_mlbatch_appcfg.m.example
              • cfg_example_add2.m
              • cfg_example_master.m
              • batch_example_add1_div_reuse_b_outname.m
              • cfg_example_div.m
              • batch_example_add1_div_reuse_b.m
              • cfg_example_sum.m
              • cfg_example_run_div.m
              • cfg_example_cumsum2.m
              • cfg_example_run_cumsum2.m
              • cfg_example_run_sum.m
              • toy_example.m
              • cfg_example_run_cumsum1.m
              • batch_example_add1_div.m
              • cfg_example_add1.m
              • cfg_example_run_add2.m
              • batch_example_add1.m
            • cfg_serial.m
            • @cfg_dep
              • update_deps.m
              • gencode.m
              • cfg_dep.m
              • subsref.m
              • isequaltarget.m
              • add_to_source.m
              • isequalsource.m
              • ctranspose.m
              • del_in_source.m
              • private
                • mysubs_fields.m
              • subsasgn.m
              • display.m
              • disp.m
              • subs_fields.m
              • dep_add.m
              • del_in_target.m
            • gencode_substructcode.m
            • @cfg_exbranch
              • cfg_exbranch.m
              • update_deps.m
              • gencode_item.m
              • subsref.m
              • harvest.m
              • showdetail.m
              • subsasgn_check.m
              • private
                • mysubs_fields.m
              • subsasgn.m
              • display.m
              • disp.m
              • fieldnames.m
              • cfg2struct.m
              • subs_fields.m
            • @cfg_menu
              • gencode_item.m
              • subsref.m
              • showdetail.m
              • subsasgn_check.m
              • private
                • mysubs_fields.m
              • subsasgn.m
              • setval.m
              • fieldnames.m
              • cfg2struct.m
              • subs_fields.m
              • cfg_menu.m
              • showdoc.m
            • cfg_callbuiltin.m
            • subsasgn_check_num.m
            • cfg_dbstop.m
            • help2cell.m
            • private
              • inputdlg.m
              • getnicedialoglocation.m
              • cfg_ui_disable.m
              • README.inputdlg.txt
              • cfg_textfill.m
              • int2str.m
              • cfg_justify.m
              • num2str.m
              • cfg_run_cm.m
              • setdefaultbutton.m
              • cfg_mlbatch_root.m
              • cfg_ui_getListboxTop.m
              • cfg_util_persistent.m
              • copyright_spm.m
              • listdlg.m
              • copyright_cfg.m
              • cfg_onscreen.m
              • cfg_maxextent.m
              • cfg_mlbatch_defaults.m
              • cfg_eval_valedit.m
              • requestJavaAdapter.m
              • cfg_disp_error.m
              • cfg_ui_restore.m
            • @cfg_item
              • subsref_job.m
              • update_deps.m
              • gencode.m
              • gencode_item.m
              • resolve_deps.m
              • initialise.m
              • subsref.m
              • match.m
              • all_leafs.m
              • docheck.m
              • harvest.m
              • showdetail.m
              • subsasgn_job.m
              • subsasgn_check.m
              • private
                • mysubs_fields.m
              • expand.m
              • subsasgn.m
              • horzcat.m
              • cfg_item.m
              • cat.m
              • gettag.m
              • all_set.m
              • list.m
              • display.m
              • setval.m
              • fillvals.m
              • subsasgn_checkstr.m
              • disp.m
              • cfg2jobsubs.m
              • fieldnames.m
              • cfg2struct.m
              • subs_fields.m
              • tag2cfgsubs.m
              • showdoc.m
              • clearval.m
              • val2def.m
              • vertcat.m
              • all_set_item.m
            • cfg_getfile.m
            • cfg_txtdesc2cfg.m
            • cfg_tropts.m
            • cfg_util.m
            • cfg_get_defaults.m
            • cfg_load_jobs.m
            • cfg_ui.m
            • cfg_job.m
            • matlabbatch.man
            • cfg_ui_multibatch.fig
            • cfg_basicio
              • cfg_run_gzip_files.m
              • cfg_run_runjobs.m
              • cfg_vout_save_vars.m
              • src
                • batch_basicio_codegen.m
                • 02_var_ops
                  • batch_basicio_toplevel.m
                  • batch_basicio_14_assignin.m
                  • batch_basicio_12_save_vars.m
                  • batch_basicio_10_named_input.m
                  • batch_basicio_13_subsrefvar.m
                  • batch_basicio_11_load_vars.m
                • batch_basicio_toplevel.m
                • 01_file_dir_ops
                  • batch_basicio_08_fileparts.m
                  • batch_basicio_toplevel.m
                  • 01_dir_ops
                    • batch_basicio_toplevel.m
                    • batch_basicio_04_named_dir.m
                    • batch_basicio_03_mkdir.m
                    • batch_basicio_02_cd.m
                  • 02_file_ops
                    • batch_basicio_01_file_move.m
                    • batch_basicio_toplevel.m
                    • batch_basicio_06_file_fplist.m
                    • batch_basicio_03_gunzip_files.m
                    • batch_basicio_05_named_file.m
                    • batch_basicio_07_file_filter.m
                    • batch_basicio_02_gzip_files.m
                    • batch_basicio_09_file_split.m
                • 03_run_ops
                  • batch_basicio_15_runjobs.m
                  • batch_basicio_toplevel.m
                  • batch_basicio_16_call_matlab.m
                • create_cfg_cfg_basicio.m
              • cfg_vout_file_filter.m
              • cfg_vout_gunzip_files.m
              • cfg_vout_named_dir.m
              • cfg_run_named_file.m
              • cfg_run_assignin.m
              • cfg_vout_named_input.m
              • cfg_vout_file_move.m
              • cfg_run_fileparts.m
              • cfg_cfg_basicio_def.m
              • cfg_run_mkdir.m
              • cfg_run_gunzip_files.m
              • cfg_vout_mkdir.m
              • cfg_run_call_matlab.m
              • cfg_vout_dir_move.m
              • cfg_run_subsrefvar.m
              • cfg_run_named_dir.m
              • cfg_run_file_move.m
              • cfg_vout_runjobs.m
              • cfg_cfg_basicio.m
              • cfg_run_cd.m
              • cfg_vout_file_fplist.m
              • cfg_check_assignin.m
              • cfg_run_file_filter.m
              • cfg_run_save_vars.m
              • cfg_vout_file_split.m
              • cfg_run_file_split.m
              • cfg_vout_named_file.m
              • cfg_run_file_fplist.m
              • cfg_run_dir_move.m
              • cfg_load_vars.m
              • cfg_basicio_rewrite.m
              • cfg_vout_gzip_files.m
              • cfg_vout_fileparts.m
              • cfg_run_named_input.m
            • hgsave_pre2008a.m
            • @cfg_files
              • gencode_item.m
              • subsref.m
              • match.m
              • showdetail.m
              • subsasgn_check.m
              • private
                • mysubs_fields.m
              • subsasgn.m
              • cfg_files.m
              • fieldnames.m
              • cfg2struct.m
              • subs_fields.m
            • @cfg_choice
              • subsref_job.m
              • update_deps.m
              • gencode_item.m
              • initialise.m
              • subsref.m
              • all_leafs.m
              • showmydoc.m
              • harvest.m
              • showdetail.m
              • subsasgn_job.m
              • subsasgn_check.m
              • checksubs_job.m
              • cfg_choice.m
              • tagnames.m
              • private
                • mysubs_fields.m
              • expand.m
              • subsasgn.m
              • treepart.m
              • all_set.m
              • list.m
              • setval.m
              • fillvals.m
              • cfg2jobsubs.m
              • fieldnames.m
              • cfg2struct.m
              • subs_fields.m
              • tag2cfgsubs.m
              • showdoc.m
              • clearval.m
              • val2def.m
              • all_set_item.m
            • cfg_confgui
              • cfg_run_template.m
              • cfg_confgui.m
            • cfg_message.m
            • cfg_struct2cfg.m
            • cfg_ui_multibatch.m
            • cfg_ui.fig
          • spm_resels_vol.m
          • spm_dcm_mtf.m
          • spm_soreduce.m
          • spm_searchlight.m
          • spm_rand_mar.m
          • spm_get_volumes.m
          • spm_squeeze.m
          • spm_mesh_render.m
          • spm_dcm_mdp.m
          • spm_DEM_diff.m
          • spm_design_factorial.m
          • spm_mvb_cvk.m
          • spm_slice_vol.mexmaci64
          • spm_ecat2nifti.m
          • spm_uc_RF.m
          • @slover
            • get_pos.m
            • fill_defaults.m
            • subsref.m
            • slover.m
            • add_matrix.m
            • paint.m
            • print_fig.m
            • private
              • actc.mat
              • pr_blobs2vol.m
              • x_rain.lut
              • x_hot.lut
              • pr_volmaxmin.m
              • flow.lut
              • hotiron.lut
              • pr_scaletocmap.m
              • nih_fire.lut
              • spectrum.lut
              • nih_ice.lut
              • pr_getcmap.m
              • ge_color.lut
              • pr_matrix2vol.m
              • mars_struct.m
              • pr_get_spm_results.m
              • blackbdy.lut
              • rainramp.lut
              • pr_basic_ui.m
              • nih.lut
              • cardiac.lut
              • gold.lut
            • subsasgn.m
            • display.m
            • point_vals.m
            • add_spm.m
            • add_blobs.m
          • bin
            • spm12-octave
            • spm12-matlab
            • spm12-mcr
          • spm_file_merge.m
          • spm_eeg_fuse.m
          • spm_unlink.m
          • spm_eeg_specest_mtmfft.m
          • spm_mkdir.m
          • spm_Q.m
          • spm_create_vol.m
          • @xmltree
            • copy.m
            • move.m
            • find.m
            • set.m
            • setfilename.m
            • get.m
            • convert.m
            • view.m
            • add.m
            • char.m
            • attributes.m
            • getfilename.m
            • length.m
            • Contents.m
            • private
              • Makefile
              • xml_findstr.mexw64
              • xml_findstr.c
              • xml_findstr.mexa64
              • xml_findstr.mexw32
              • xml_parser.m
              • xml_findstr.m
              • xml_findstr.mexmaci64
            • save.m
            • xmltree.m
            • root.m
            • delete.m
            • display.m
            • editor.m
            • children.m
            • flush.m
            • isfield.m
            • parent.m
            • branch.m
          • spm_global.m
          • spm_eeg_reduce_imagcsd.m
          • spm_powell.m
          • spm_eeg_inv_checkdatareg.m
          • spm.m
          • spm_dcm_peb_review.m
          • spm_mesh_split.m
          • spm_eeg_plotScalpData.m
          • spm_mean.m
          • spm_eeg_artefact.m
          • spm_vb_a.m
          • spm_eeg_avgtime.m
          • spm_robust_glm.m
          • spm_mesh_neighbours.m
          • spm_LAP_F.m
          • spm_mesh_contour.m
          • spm_sample_vol.mexw32
          • spm_est_smoothness.m
          • spm_eeg_inv_mesh_spherify.m
          • spm_bms_display_ROI.m
          • spm_eeg_inv_transform_mesh.m
          • spm_get_defaults.m
          • spm_dcm_U.m
          • spm_authors.m
          • spm_eeg_inv_prep_modes_xval.m
          • spm_eeg_invertiter.m
          • spm_data_write.m
          • spm_jsonread.mexw64
          • spm_MDP_da.m
          • spm_write_filtered.m
          • spm_dcm_loo.m
          • spm_load_priors8.m
          • spm_kl_wishart.m
          • spm_BMS_gibbs.m
          • spm_get_image_def.m
          • spm_eeg_inv_headcoordinates.m
          • spm_ar_reml.m
          • spm_bsplinc.mexw64
          • spm_match_str.m
          • spm_grid.mat
          • spm_trace.m
          • spm_dcm_bmr_all.m
          • spm_check_version.m
          • spm_Xcdf.m
          • spm_BMS.m
          • spm_eeg_correct_sensor_data.m
          • spm_dctmtx.m
          • spm_LAP_eval.m
          • spm_matrix.m
          • spm_uw_apply.m
          • spm_mfx.m
          • spm_hist2.m
          • spm_dcm_ui.m
          • spm_dcm_ppd.m
          • spm_eeg_project3D.m
          • spm_sample_vol.mexmaci64
          • spm_cond_units.m
          • spm_dcm_sparse_priors.m
          • spm_dcm_peb_to_gcm.m
          • spm_dcm_diagnose.m
          • spm_design_within_subject.m
          • spm_unlink.mexmaci64
          • spm_eeg_convert2images.m
          • spm_mrf.mexw64
          • spm_axis.m
          • spm_conv_vol.m
          • spm_eeg_downsample.m
          • spm_large_dcm_reduce.m
          • spm_fmri_spm_ui.m
          • spm_ekf.m
          • spm_grid.m
          • spm_dcm_optimise.m
          • spm_orientations.m
          • spm_load.m
          • spm_eeg_artefact_saccade.m
          • spm_mesh_edges.m
          • spm_eeg_specest_morlet.m
          • spm_select.m
          • spm_fp.m
          • spm_eeg_artefact_threshchan.m
          • spm_plot_convergence.m
          • spm_list.m
          • spm_MH_reml_likelihood.m
          • spm_LAPS.m
          • spm_DEM_embed.m
          • spm_eeg_mask.m
          • spm_kl_normal.m
          • spm_eeg_history.m
          • spm_project.mexmaci64
          • spm_en.m
          • spm_smoothkern.m
          • spm_dilate.m
          • spm_mvNpdf.m
          • spm_mip.m
          • spm_P_peakFDR.m
          • spm_gx_state_fmri.m
          • spm_krutil.m
          • spm_conman.m
          • spm_Gpdf.m
          • spm_DEM_set.m
          • spm_eeg_displayECD.m
          • spm_lotka_volterra.m
          • spm_fMRI_design.m
          • spm_graph.m
          • spm_preproc_write8.m
          • spm_eeg_artefact_eyeblink.m
          • spm_eeg_reduce_pca_adapt.m
          • spm_bms_anova.m
          • spm_eeg_inv_extract.m
          • spm_conv_vol.mexa64
          • spm_check_results.m
          • spm_mrf.mexmaci64
          • spm_eeg_load.m
          • spm_sections.m
          • spm_mesh_inflate.m
          • spm_Welcome.m
          • spm_eeg_artefact_zscorediff.m
          • spm_compare_families.m
          • spm_dilate_erode.mexw32
          • spm_sptop.m
          • spm_ancova.m
          • spm_imcalc.m
          • spm_print.m
          • spm_spm_vb.m
          • spm_dilate_erode.mexa64
          • spm_invFcdf.m
          • spm_eeg_select_event_ui.m
          • spm_eeg_invert_display.m
          • spm_dcm_peb_rnd.m
          • spm_eeg_inv_rigidreg.m
          • spm_krutil.mexw32
          • spm_cva_ui.m
          • spm_eeg_review.m
          • spm_u.m
          • spm_vec.m
          • spm_sde_dx.m
          • spm_read_vols.m
          • spm_normrnd.m
          • spm_hist2.mexa64
          • spm_DEM_qP.m
          • spm_eeg_review_buttons.mat
          • spm_vb_spatial_precision.m
          • spm_hist2.mexw32
          • spm_affine_priors.m
          • AUTHORS.txt
          • spm_sqrtm.m
          • spm_fx_hdm.m
          • spm_diff_dx.m
          • spm_orth.m
          • spm_phi.m
          • spm_reml_sc.m
          • spm_mnc2nifti.m
          • spm_global.mexw32
          • spm_provenance.m
          • spm_regions.m
          • spm_dwtmtx.m
          • spm_eeg_invert_classic_mix.m
          • spm_int_B.m
          • spm_data_id.m
          • spm_dcm_fmri_graph_gen.m
          • spm_BMS_F.m
          • spm_cva.m
          • spm_eeg_specest_hilbert.m
          • spm_add.mexmaci64
          • spm_cat.mexw32
          • spm_parrec2nifti.m
          • spm_eeg_remove_bad_trials.m
          • spm_file_split.m
          • spm_mask.m
          • @file_array
            • reshape.m
            • initialise.m
            • subsref.m
            • file_array.m
            • double.m
            • transpose.m
            • isnan.m
            • loadobj.m
            • ctranspose.m
            • length.m
            • Contents.m
            • private
              • init.mexw64
              • file2mat.c
              • mat2file.mexa64
              • file2mat.m
              • dtype.m
              • mat2file.m
              • Makefile
              • datatypes.m
              • mat2file.mexw64
              • scl_inter.m
              • mat2file.mexw32
              • init.mexa64
              • file2mat.mexmaci64
              • init.c
              • file2mat.mexw64
              • file2mat.mexw32
              • file2mat.mexa64
              • permission.m
              • init.mexmaci64
              • init.mexw32
              • init.m
              • mat2file.mexmaci64
              • mystruct.m
              • dim.m
              • fname.m
              • resize_scales.m
              • scl_slope.m
              • mat2file.c
              • offset.m
            • subsasgn.m
            • end.m
            • horzcat.m
            • cat.m
            • display.m
            • numeric.m
            • disp.m
            • fieldnames.m
            • numel.m
            • permute.m
            • size.m
            • ndims.m
            • vertcat.m
          • spm_vb_roi_anova.m
          • spm_eeg_combineplanar.m
          • spm_dot.m
          • spm_eeg_grandmean.m
          • spm_get_bf.m
          • spm_Q_perm.m
        • gmsh
          • Info.plist
        • gui_icon.bmp
        • templates
          • MNI152_T1_2mm_head_dil.nii.gz
          • CC_filterkernel.nii.gz
        • gui_icon.ico
        • gui_icon.gif
        • ElectrodeCaps_MNI
          • EEG10-20_extended_SPM12.geo
          • EEG10-20_extended_SPM12.csv
          • EEG10-10_Cutini_2011.csv
          • EEG10-10_UI_Jurak_2007.csv
          • Fiducials.csv
          • EEG10-10_Neuroelectrics.geo
          • EEG10-10_Cutini_2011.geo
          • Fiducials.geo
          • EEG10-10_Neuroelectrics.csv
          • EEG10-20_Okamoto_2004.geo
          • Simnibs2.1_TDCScaps_description.odt
          • EEG10-10_UI_Jurak_2007.geo
          • EEG10-20_Okamoto_2004.csv
      • include
        • osx
          • petsc
            • petscts.h
            • HYPRE_seq_mv.h
            • petscmatcoarsen.h
            • HYPRE_MatvecFunctions.h
            • petscpctypes.h
            • petscblaslapack_mangle.h
            • petscdmnetwork.h
            • _hypre_struct_ls.h
            • petscdmadaptor.h
            • lobpcg.h
            • petscfvtypes.h
            • petscsnes.h
            • petsccuda.h
            • petscctable.h
            • petscdmplex.h
            • petscdrawtypes.h
            • petsctao.h
            • HYPREf.h
            • temp_multivector.h
            • krylov.h
            • petscbag.h
            • fortran.h
            • petscistypes.h
            • petsc.h
            • petscfetypes.h
            • HYPRE_sstruct_ls.h
            • petscksp.h
            • csr_matmultivec.h
            • petscwebclient.h
            • petscis.h
            • petscviewerhdf5.h
            • HYPRE.h
            • HYPRE_parcsr_mv.h
            • _hypre_IJ_mv.h
            • petscmatlab.h
            • par_multivector.h
            • HYPRE_struct_mv.h
            • par_csr_pmvcomm.h
            • petscdmlabel.h
            • _hypre_parcsr_ls.h
            • petscfix.h
            • petscviewer.h
            • par_csr_matmultivec.h
            • mpio.h
            • petsclog.h
            • petscviewertypes.h
            • petscmathypre.h
            • petscdmtypes.h
            • mpiof.h
            • HYPRE_IJ_mv.h
            • petscconvest.h
            • petscdstypes.h
            • HYPRE_config.h
            • petscmatelemental.h
            • petscblaslapack.h
            • petscmat.h
            • petsctaolinesearch.h
            • petscpc.h
            • HYPRE_error_f.h
            • seq_mv.h
            • petscdmpatch.h
            • petscmachineinfo.h
            • petscoptions.h
            • interpreter.h
            • _hypre_parcsr_mv.h
            • petsccharacteristic.h
            • petscerror.h
            • _hypre_sstruct_ls.h
            • HYPRE_parcsr_ls.h
            • petscdm.h
            • petscgll.h
            • HYPRE_lobpcg.h
            • petscdmdatypes.h
            • petscds.h
            • petscfv.h
            • petscdmswarm.h
            • petscmath.h
            • _hypre_struct_mv.h
            • fortran_matrix.h
            • petscbt.h
            • petscao.h
            • HYPRE_DistributedMatrixPilutSolver_types.h
            • petscdmshell.h
            • HYPRE_struct_ls.h
            • petscvec.h
            • petsctime.h
            • petscfe.h
            • mpi.h
            • multivector.h
            • hypre_hopscotch_hash.h
            • distributed_matrix.h
            • petscversion.h
            • petscviennacl.h
            • mpicxx.h
            • petscdmda.h
            • petscdmcomposite.h
            • petscdt.h
            • HYPRE_sstruct_mv.h
            • HYPRE_matrix_matrix_protos.h
            • petscdmforest.h
            • petscdmmoab.h
            • _hypre_sstruct_mv.h
            • petscblaslapack_stdcall.h
            • petscdraw.h
            • par_csr_block_matrix.h
            • petscsftypes.h
            • petscsf.h
            • petscconf.h
            • petscdmsliced.h
            • petscvalgrind.h
            • petscdmredundant.h
            • HYPRE_DistributedMatrixPilutSolver_protos.h
            • HYPRE_krylov.h
            • petscconfiginfo.h
            • HYPRE_utilities.h
            • seq_multivector.h
            • petscviewersaws.h
            • csr_block_matrix.h
            • _hypre_utilities.h
            • petscsys.h
            • petscpf.h
        • linux
          • petsc
            • petscts.h
            • HYPRE_seq_mv.h
            • petscmatcoarsen.h
            • HYPRE_MatvecFunctions.h
            • petscpctypes.h
            • petscblaslapack_mangle.h
            • petscdmnetwork.h
            • _hypre_struct_ls.h
            • petscdmadaptor.h
            • lobpcg.h
            • petscfvtypes.h
            • petscsnes.h
            • petsccuda.h
            • petscctable.h
            • petscdmplex.h
            • petscdrawtypes.h
            • petsctao.h
            • HYPREf.h
            • temp_multivector.h
            • krylov.h
            • petscbag.h
            • fortran.h
            • petscistypes.h
            • petsc.h
            • petscfetypes.h
            • HYPRE_sstruct_ls.h
            • petscksp.h
            • csr_matmultivec.h
            • petscwebclient.h
            • petscis.h
            • petscviewerhdf5.h
            • HYPRE.h
            • HYPRE_parcsr_mv.h
            • _hypre_IJ_mv.h
            • petscmatlab.h
            • par_multivector.h
            • HYPRE_struct_mv.h
            • par_csr_pmvcomm.h
            • petscdmlabel.h
            • _hypre_parcsr_ls.h
            • petscfix.h
            • petscviewer.h
            • par_csr_matmultivec.h
            • mpio.h
            • petsclog.h
            • petscviewertypes.h
            • petscmathypre.h
            • petscdmtypes.h
            • mpiof.h
            • HYPRE_IJ_mv.h
            • petscconvest.h
            • petscdstypes.h
            • HYPRE_config.h
            • petscmatelemental.h
            • petscblaslapack.h
            • petscmat.h
            • petsctaolinesearch.h
            • petscpc.h
            • HYPRE_error_f.h
            • seq_mv.h
            • petscdmpatch.h
            • petscmachineinfo.h
            • petscoptions.h
            • interpreter.h
            • _hypre_parcsr_mv.h
            • petsccharacteristic.h
            • petscerror.h
            • _hypre_sstruct_ls.h
            • HYPRE_parcsr_ls.h
            • petscdm.h
            • petscgll.h
            • HYPRE_lobpcg.h
            • petscdmdatypes.h
            • petscds.h
            • petscfv.h
            • petscdmswarm.h
            • petscmath.h
            • _hypre_struct_mv.h
            • fortran_matrix.h
            • petscbt.h
            • petscao.h
            • HYPRE_DistributedMatrixPilutSolver_types.h
            • petscdmshell.h
            • HYPRE_struct_ls.h
            • petscvec.h
            • petsctime.h
            • petscfe.h
            • mpi.h
            • multivector.h
            • hypre_hopscotch_hash.h
            • distributed_matrix.h
            • petscversion.h
            • petscviennacl.h
            • mpicxx.h
            • petscdmda.h
            • petscdmcomposite.h
            • petscdt.h
            • HYPRE_sstruct_mv.h
            • HYPRE_matrix_matrix_protos.h
            • petscdmforest.h
            • petscdmmoab.h
            • _hypre_sstruct_mv.h
            • petscblaslapack_stdcall.h
            • petscdraw.h
            • par_csr_block_matrix.h
            • petscsftypes.h
            • petscsf.h
            • petscconf.h
            • petscdmsliced.h
            • petscvalgrind.h
            • petscdmredundant.h
            • HYPRE_DistributedMatrixPilutSolver_protos.h
            • HYPRE_krylov.h
            • petscconfiginfo.h
            • HYPRE_utilities.h
            • seq_multivector.h
            • petscviewersaws.h
            • csr_block_matrix.h
            • _hypre_utilities.h
            • petscsys.h
            • petscpf.h
        • win
          • petsc
            • petscts.h
            • petscmatcoarsen.h
            • petscpctypes.h
            • petscblaslapack_mangle.h
            • petscdmnetwork.h
            • petsc
              • mpiuni
                • mpif.h
                • mpiunifdef.h
                • mpi.h
              • private
                • dmdaimpl.h
                • viewerimpl.h
                • dmpleximpl.h
                • snesimpl.h
                • dmadaptorimpl.h
                • fortranimpl.h
                • matimpl.h
                • kernels
                  • blocktranspose.h
                  • petscaxpy.h
                  • blockinvert.h
                  • blockmatmult.h
                • tsimpl.h
                • dmforestimpl.h
                • pcgamgimpl.h
                • petscfvimpl.h
                • petscfptimpl.h
                • taoimpl.h
                • taolinesearchimpl.h
                • dmlabelimpl.h
                • dmswarmimpl.h
                • dtimpl.h
                • dmimpl.h
                • pcimpl.h
                • glvisvecimpl.h
                • makefile
                • sfimpl.h
                • hash.h
                • petscfeimpl.h
                • petscimpl.h
                • dmnetworkimpl.h
                • isimpl.h
                • vecimpl.h
                • petscconvestimpl.h
                • logimpl.h
                • f90impl.h
                • dmpatchimpl.h
                • linesearchimpl.h
                • bagimpl.h
                • matorderimpl.h
                • characteristicimpl.h
                • drawimpl.h
                • pcmgimpl.h
                • dmmbimpl.h
                • kspimpl.h
                • glvisviewerimpl.h
                • petscdsimpl.h
              • finclude
                • petscts.h
                • petscdmnetwork.h
                • petscsnes.h
                • petscdmplex.h
                • petsctao.h
                • petscbag.h
                • petsc.h
                • petscksp.h
                • petscis.h
                • petscdmlabel.h
                • petscviewer.h
                • petsclog.h
                • petscmat.h
                • petscpc.h
                • petscsnesfas.h
                • petscerror.h
                • petscdm.h
                • makefile
                • petscao.h
                • petscvec.h
                • petscdmda.h
                • petscdraw.h
                • petscsys.h
            • petscdmadaptor.h
            • petscfvtypes.h
            • petscsnes.h
            • petsccuda.h
            • petscctable.h
            • petscdmplex.h
            • petscdrawtypes.h
            • petsctao.h
            • petscbag.h
            • petscistypes.h
            • petsc.h
            • petscfetypes.h
            • petscksp.h
            • petscwebclient.h
            • petscis.h
            • petscviewerhdf5.h
            • petscmatlab.h
            • petscdmlabel.h
            • petscfix.h
            • petscviewer.h
            • petsclog.h
            • petscviewertypes.h
            • petscmathypre.h
            • petscdmtypes.h
            • petscconvest.h
            • petscdstypes.h
            • petscmatelemental.h
            • petscblaslapack.h
            • petscmat.h
            • petsctaolinesearch.h
            • petscpc.h
            • petscdmpatch.h
            • petscmachineinfo.h
            • petscoptions.h
            • petsccharacteristic.h
            • petscerror.h
            • petscdm.h
            • petscgll.h
            • petscdmdatypes.h
            • petscds.h
            • petscfv.h
            • petscdmswarm.h
            • petscmath.h
            • petscbt.h
            • petscao.h
            • petscdmshell.h
            • petscvec.h
            • petsctime.h
            • petscfe.h
            • petscversion.h
            • petscviennacl.h
            • petscdmda.h
            • petscdmcomposite.h
            • petscdt.h
            • petscdmforest.h
            • petscdmmoab.h
            • petscblaslapack_stdcall.h
            • petscdraw.h
            • petscsftypes.h
            • petscsf.h
            • petscconf.h
            • petscdmsliced.h
            • petscvalgrind.h
            • petscdmredundant.h
            • petscconfiginfo.h
            • petscviewersaws.h
            • petscsys.h
            • petscpf.h
          • mpi
            • mspms.h
            • mpif.h
            • mpio.h
            • x86
              • mpifptr.h
            • pmidbg.h
            • mpi.h
            • x64
              • mpifptr.h
            • mpi.f90
          • hypre
            • HYPRE_seq_mv.h
            • HYPRE_MatvecFunctions.h
            • _hypre_struct_ls.h
            • lobpcg.h
            • HYPREf.h
            • temp_multivector.h
            • krylov.h
            • fortran.h
            • HYPRE_sstruct_ls.h
            • csr_matmultivec.h
            • HYPRE.h
            • HYPRE_parcsr_mv.h
            • _hypre_IJ_mv.h
            • par_multivector.h
            • HYPRE_struct_mv.h
            • par_csr_pmvcomm.h
            • _hypre_parcsr_ls.h
            • par_csr_matmultivec.h
            • HYPRE_IJ_mv.h
            • HYPRE_config.h
            • HYPRE_error_f.h
            • seq_mv.h
            • interpreter.h
            • _hypre_parcsr_mv.h
            • _hypre_sstruct_ls.h
            • HYPRE_parcsr_ls.h
            • HYPRE_lobpcg.h
            • _hypre_struct_mv.h
            • fortran_matrix.h
            • HYPRE_DistributedMatrixPilutSolver_types.h
            • HYPRE_struct_ls.h
            • multivector.h
            • hypre_hopscotch_hash.h
            • distributed_matrix.h
            • HYPRE_sstruct_mv.h
            • HYPRE_matrix_matrix_protos.h
            • _hypre_sstruct_mv.h
            • par_csr_block_matrix.h
            • HYPRE_DistributedMatrixPilutSolver_protos.h
            • HYPRE_krylov.h
            • HYPRE_utilities.h
            • seq_multivector.h
            • csr_block_matrix.h
            • _hypre_utilities.h
      • cython_code
        • petsc_solver.pyx
        • cython_msh.pyx
        • _marching_cubes_lewiner_cy.pyx
        • __init__.py
        • _solver.c
      • optimization
        • optimization_methods.py
        • optimize_tms.py
        • opt_struct.py
        • __init__.py
      • matlab
        • parse_input.m
        • mesh_extract_regions.m
        • subject2mni_coords.m
        • mesh_save_hdf5.m
        • mesh_get_tetrahedron_sizes.m
        • simnibs_cli_call.m
        • mesh_get_simulation_result.m
        • get_field_idx.m
        • get_fields_at_coordinates.m
        • mesh_get_histogram.m
        • mesh_get_triangle_centers.m
        • get_data_and_scaleLimits.m
        • mesh_load_fssurf.m
        • mesh_empty.m
        • mesh_load_fsresults.m
        • mesh_show_surface.m
        • opt_struct.m
        • mesh_load_data_matrix_entry.m
        • mesh_load_gmsh4.m
        • standard_cond.m
        • mesh_get_surf_extrema_and_percentiles.m
        • mesh_get_fieldpeaks_and_focality.m
        • nifti_load.m
        • mesh_get_tetrahedron_centers.m
        • mesh_load_hdf5.m
        • run_simnibs.m
        • mesh_get_node_areas.m
        • sim_struct.m
        • nifti_save.m
        • mesh_load_fsannot.m
        • subject_atlas.m
        • mesh_get_triangle_sizes.m
        • mni2subject_coords.m
        • mesh_save_gmsh4.m
      • examples
        • optimization
          • tdcs_optimize_multi_target.py
          • leadfield.m
          • tdcs_optimize_avoid.py
          • tdcs_optimize_intensity.py
          • tdcs_optimize_multi_target.m
          • leadfield.py
          • tdcs_optimize_mni.py
          • tms_optimization.py
          • tms_opt_refined.m
          • tdcs_optimize_mni.m
          • tdcs_optimize.py
          • tdcs_optimize.m
          • tdcs_optimize_avoid.m
          • tdcs_optimize_intensity.m
          • tms_optimization.m
          • tms_opt_refined.py
        • simulations
          • run_simulations_group.py
          • tDCS.py
          • TMS.py
          • TMS_MNI.py
          • run_simulations_group.m
          • tDCS_ring.m
          • TMS.m
          • tDCS_ring.py
          • tDCS_advanced.m
          • tDCS.m
          • TMS_MNI.m
        • analysis
          • transform_coordinates.m
          • roi_analysis_surf.py
          • example_get_data_from_fs_files.m
          • roi_analysis_mni.m
          • group_average_fsavg.m
          • roi_analysis_surf.m
          • roi_analysis_mni.py
          • group_average_mni.py
          • group_average_fsavg.py
          • example_get_data_from_msh.m
          • group_average_mni.m
          • transform_coordinates.py
        • uncertainty_quantification
          • uncertainty_quantification.py
          • uncertainty_quantification.m
          • uq_secondary_quantities.py
          • uq_setup_advanced.py
      • GUI
        • nifti_viewer.py
        • head_model_OGL.py
        • electrodeGUI.py
        • simulation_menu.py
        • __init__.py
        • main_gui.py
      • ccd-files
        • MagVenture_MC_B70.ccd
      • cli
        • run_simnibs.py
        • maskmesh.py
        • merge_labels_WM.py
        • postinstall_simnibs.py
        • subject_atlas.py
        • gmsh.py
        • mni2subject.py
        • subject2mni.py
        • mri2mesh.py
        • msh2cortex.py
        • dwi2cond.py
        • get_eeg_positions.py
        • headreco.py
        • nii2msh.py
        • mni2subject_coords.py
        • get_fields_at_coordinates.py
        • subject2mni_coords.py
        • simnibs_gui.py
        • postinstall_simnibs.py.orig
        • __init__.py
        • check_meshed_volumes.py
        • eeg_positions.py
        • meshfix.py
        • msh2nii.py
      • simulation
        • fem.py
        • run_simnibs.py
        • cond.py
        • analytical_solutions
          • sphere.py
          • __init__.py
        • electrode_placement.py
        • gpc.py
        • __init__.py
        • sim_struct.py
        • pardiso.py
        • coil_numpy.py
      • lib
        • osx
          • libmpi.dylib
          • libpmpi.dylib
          • libpetsc.3.9.dylib
          • libpetsc.dylib
        • linux
          • libpetsc.so
        • win
      • pygpc
        • misc.py
        • ni.py
        • adaptive.py
        • grid.py
        • testfuncs
          • lim_2002.py
          • oakley_ohagan_2004_a1.txt
          • wing_weight.py
          • peaks.py
          • g_function.py
          • oakley_ohagan_2004_a2.txt
          • ishigami.py
          • sphere.py
          • __init__.py
          • sphere_fun.py
          • oakley_ohagan_2004_a3.txt
          • oakley_ohagan_2004.py
          • welch_1992.py
          • oakley_ohagan_2004_M.txt
          • testfunctions.py
          • sphere0_fun.py
        • __init__.py
      • __init__.py
      • tests
        • testing_files
          • iso_eeg.pro
          • session.mat
          • aniso_tms.pro
          • iso_tdcs.pro
          • iso_tms.pro
        • utils
          • test_file_finder.py
        • optimization
          • test_opt_struct.py
          • test_optimize_tms.py
          • test_optimization_methods.py
        • matlab
          • test_gmsh_io.m
          • anydifferences.m
        • examples
          • examples.py
          • octave_compatibility
            • repelem.m
            • mesh_show_surface.m
        • integration
          • test_simnibsrun_simstruct.mat
          • simnibsrun_prep_simstruct.py
          • test_simnibsrun_positions.csv
          • test_simnibsrun.sh
        • simulation
          • analytical_solutions
            • test_sphere.py
          • test_fem.py
          • test_coil.py
          • test_electrode_placement.py
          • test_pardiso.py
          • test_cond.py
          • test_gpc.py
          • test_sim_struct.py
        • pygpc
          • test_adaptive.py
        • msh
          • test_mesh_io.py
          • test_surface.py
          • test_transformations.py
      • _version.py
      • bin
        • osx
          • getopt
          • libintl.8.dylib
        • linux
          • expr
          • getopt
        • win
      • bash_modules
        • dwi2cond.check.source.sh
        • d2c_check.opt
        • mri2mesh.brain.source.sh
        • mri2mesh.subcortical.source.sh
        • mri2mesh.mni.source.sh
        • mri2mesh.volumemesh.source.sh
        • dwi2cond
        • mri2mesh.head.source.sh
        • dwi2cond.prepro.source.sh
        • dwi2cond.t1reg.source.sh
        • dwi2cond.functions.source.sh
        • mri2mesh.check.source.sh
        • mri2mesh
        • b02b0_nosubsamp.cnf
      • msh
        • gmsh_view.py
        • segment_SPM.m
        • _marching_cubes_lewiner_luts.py
        • mesh_io.py
        • headreco.py
        • transformations.py
        • surface.py
        • __init__.py
        • segment_CAT.m
        • eeg_positions.py
        • hmutils.py
    • .gitignore
    • pack.py
    • docs
      • Makefile
      • make.bat
      • faq.rst
      • build
        • doctrees
          • dataset.doctree
          • publications.doctree
          • faq.doctree
          • tutorial
            • head_meshing.doctree
            • visualization.doctree
            • win_prompt.doctree
            • gui.doctree
            • optimization.doctree
            • advanced