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Project: simnibs
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simnibs-master
environment_macOS.yml
.github
workflows
test_examples.yml
3RD-PARTY.md
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azure-pipelines-linux.yml
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.gitattributes
setup.py
environment_win.yml
environment_linux.yml
README.md
simnibs
utils
matlab_read.py
simnibs_logger.py
file_finder.py
__init__.py
nnav.py
resources
gmsh-options_simnibsdefault
spm12
spm_vb_robust.m
spm_funcheck.m
spm_mrf.m
spm_XYZreg_Ex2.m
spm_eeg_prep_ui.m
spm_dcm_create.m
spm_mesh_smooth.m
spm_vb_models.m
spm_BMS_bor.m
spm_mldivide.m
spm_multrnd.m
spm_add.mexw32
spm_dcm_peb.m
spm_eeg_prep.m
spm_eeg_invert.m
spm_eeg_specest_mtmspec.m
spm_resels.m
spm_check_registration.m
spm_dcm_peb_full.m
spm_argmax.m
spm_voronoi.mexa64
spm_mesh_polyhedron.m
spm_mvb.m
spm_uc_Bonf.m
spm_Ncdf.m
src
spm_hist2.c
jsmn.h
shoot_optimN.c
shoot_boundary.c
shoot_multiscale.c
spm_mrf.c
spm_vol_access.h
shoot_optim3d.c
shoot_diffeo3d.h
shoot_optim3d.h
spm_slice_vol.c
shoot_expm3.h
spm_gamrnd.c
spm_vol_utils.c
spm_bsplins.c
Makefile
spm_brainwarp.c
spm_mapping.h
spm_diffeo.c
spm_cat.c
spm_sample_vol.c
shoot_invdef.c
spm_mapping.c
spm_global.c
bsplines.c
spm_getdata.h
bsplines.h
shoot_dartel.c
spm_existfile.c
spm_matfuns.c
shoot_bsplines.h
jsmn.c
spm_vol_access.c
spm_bwlabel.c
spm_krutil.c
shoot_boundary.h
spm_make_lookup.h
spm_vec.c
shoot_dartel.h
spm_get_lm.c
spm_bsplinc.c
shoot_regularisers.h
spm_project.c
spm_voronoi.c
Makefile.var
spm_render_vol.c
spm_unlink.c
shoot_expm3.c
spm_add.c
spm_make_lookup.c
bsplinc.c
spm_getdata.c
bsplins.c
shoot_diffeo3d.c
shoot_optimN.h
spm_mesh_utils.c
shoot_regularisers.c
spm_dilate_erode.c
spm_conv_vol.c
shoot_multiscale.h
spm_field.c
spm_unvec.c
spm_datatypes.h
spm_jsonread.c
spm_hist.c
shoot_bsplines.c
spm_resels_vol.c
spm_lorenz_k.m
spm_eeg_inv_get_vol_sens.m
spm_vol.m
spm_eeg_simulate.m
spm_bms_against_null.m
spm_dcm_fmri_check.m
spm_dicom_dict.txt
spm_dcm_peb_bmc.m
spm_defaults.m
spm_hdm_ui.m
spm_dcm_bmc_peb.m
spm_compact_svd.m
spm_mesh_join.m
spm_invBcdf.m
spm_cross.m
spm_convmtx.m
spm_meanby.m
spm_eeg_planarchannelset.m
spm_eeg_artefact_jump.m
spm_hist.mexw32
spm_invPcdf.m
spm_mvb_G.m
spm_funfun.m
spm_cov2corr.m
spm_eeg_avgfreq.m
spm_hist.mexw64
spm_preproc_run.m
spm_jsonread.mexw32
spm_get_closest_affine.m
spm_ADEM.m
spm_bwlabel.mexa64
spm_vb_regionF.m
spm_dcm_voi.m
spm_mesh_max.m
spm_project.m
spm_dcm_peb_fit.m
spm_render.m
spm_fn_reml.m
spm_mesh_utils.m
spm_uc_clusterFDR.m
spm_image.m
spm_bsplinc.mexa64
spm_bsplins.mexw32
spm_gamrnd.mexa64
spm_eeg_inv_Mesh2Voxels.m
spm_check_installation.m
spm_BIDS.m
spm_dcm_fmri_csd_DEM.m
spm_mesh_area.m
spm_dcm_review.m
spm_toolbox.m
spm_eeg_merge.m
spm_fp_fun.m
spm_dcm_load.m
spm_graph_ui.m
spm_FcUtil.m
spm_mesh_utils.mexw64
spm_field.mexa64
spm_mvb_bmc.m
spm_csd_fmri_mtf.m
rend
spm_DEM_eval_diff.m
spm_VOI.m
spm_cli.m
spm_make_contrasts.m
spm_pinv.m
spm_eeg_average_TF.m
spm_eeg_layout3D.m
spm_FcnTpl.txt
spm_eeg_tf.m
spm_global.mexw64
spm_extrapolate_def.m
spm_eeg_inv_icp.m
@nifti
subsref.m
structn.m
nifti.m
Contents.m
private
nifti_stats.m
nifti2struc.m
findindict.m
decode_qform0.m
read_hdr_raw.m
M2Q.m
niftistruc.m
empty_hdr.m
write_hdr_raw.m
Q2M.m
mayostruc.m
mayo2nifti1.m
nifti_stats_mex.c
write_extras.m
nifti1struc.m
getdict.m
encode_qform0.m
read_hdr.m
read_extras.m
nifti1.h
subsasgn.m
create.m
display.m
disp.m
fieldnames.m
spm_dcm_bpa.m
spm_gamrnd.mexw64
spm_sp_reml.m
spm_render_vol.mexa64
spm_bms_anova_img.m
spm_orthviews
spm_ov_reorient.m
spm_ov_display.m
spm_ov_mesh.m
spm_ov_contour.m
spm_ovhelper_3Dreg.m
spm_ov_rgb.m
spm_ov_goto_max.m
spm_ov_browser.m
spm_ov_movie.m
spm_ov_save.m
spm_ov_roi.m
spm_cell_swap.m
spm_uc.m
spm_uw_estimate.m
spm_resels_vol.mexa64
spm_cat.mexw64
spm_Npdf.m
spm_eeg_inv_transform_points.m
spm_Menu.fig
spm_kron.m
spm_LAP_ph.m
spm_eeg_invert_EBoptimise.m
spm_dcm_post_hoc.m
spm_smooth.m
spm_vb_contrasts.m
spm_detrend.m
spm_reml_A.m
spm_dcm_simulate.m
spm_dcm_fmri_mode_gen.m
spm_bwlabel.m
spm_slice_timing.m
spm_dcm_fit.m
spm_read_netcdf.m
spm_est_non_sphericity.m
spm_results_ui.m
spm_eeg_convert_ui.m
spm_vb_get_R.m
spm_uc_peakFDR.m
spm_dcm_fmri_mode.m
spm_mesh_geodesic.m
spm_eeg_artefact_flat.m
spm_SpUtil.m
spm_mvb_p.m
spm_ROI.m
spm_GDEM.m
spm_inv.m
spm_mesh_utils.mexmaci64
spm_eeg_fixpnt.m
spm_sample_vol.mexw64
spm_nlsi_LS.m
spm_zeros.m
spm_eeg_artefact_nans.m
spm_bsplins.m
spm_vb_neighbors.m
spm_dcm_specify_ui.m
spm_filter.m
spm_transverse.m
spm_eeg_crop.m
batches
preproc_fmri_without_anat.m
preproc_vbm_simplified.m
stats1_within_subject_fmri.m
preproc_fmri.m
preproc_fmri_simplified.m
stats2_between_subject.m
preproc_vbm.m
spm_existfile.mexw32
spm_eeg_collapse_timefreq.m
spm_eeg_invert_prepro.m
spm_eeg_artefact_zscore.m
spm_mesh_project.m
spm_voronoi.mexw32
spm_DEM_M_set.m
spm_int.m
spm_slice_vol.mexw32
spm_realign.m
spm_resels_vol.mexw64
spm_bilinear_condition.m
spm_ncTcdf.m
spm_gx_hdm.m
spm_contrasts.m
spm_eeg_inv_results_ui.m
spm_eeg_ft2spm.m
spm_sparse_regression.m
spm_eeg_invert_setuppatches.m
spm_eeg_locate_channels.m
spm_gn_fmin.m
spm_get_lm.m
spm_eeg_inv_vb_ecd_gui.m
spm_getSPM.m
spm_jsonread.mexmaci64
spm_slice_vol.m
spm_conv.m
spm_imatrix.m
spm_bms_display.m
spm_dcm_peb_bmc_fam.m
spm_eeg_simulate_frominv.m
spm_csd_fmri_mar.m
spm_DEM_int.m
spm_softmax.m
spm_resels_vol.mexmaci64
spm_vb_taylor_R.m
spm_DFP.m
spm_LAP_pg.m
spm_ndgrid.m
spm_jsonread.mexa64
spm_find_pC.m
spm_fp_display_nullclines.m
spm_ddiff.m
spm_vb_init_volume.m
spm_smohist.m
spm_eeg_inv_vbecd.m
spm_get_bbox.m
spm_vb_get_Gn.m
spm_results_nidm.m
spm_nCr.m
spm_existfile.m
spm_eeg_invert_classic.m
spm_P_FDR.m
spm_eeg_inv_imag_api.fig
spm_timeseries_resample.m
spm_dcm_fmri_image.m
spm_rmpath.m
spm_betaln.m
spm_kl_normald.m
spm_mvb_cvk2.m
spm_spy.m
spm_eeg_contrast.m
spm_eeg_inv_checkmeshes.m
spm_render_vol.mexmaci64
spm_hdm_priors.m
spm_get_space.m
spm_rand_power_law.m
spm_field.mexw32
spm_invNcdf.m
spm_type.m
spm_vb_F.m
spm_deformations.m
spm_eeg_lapmtx.m
spm_project.mexa64
spm_fs_fmri_csd.m
spm_add.mexw64
spm_dcm_check_stability.m
spm_eeg_inv_visu3D_api.m
spm_eeg_regressors_tfphase.m
spm_eeg_robust_averaget.m
spm_dcm_identify.m
spm_DEM_qU.m
spm_XYZreg.m
spm_ADEM_update.m
spm_int_sde.m
spm_eeg_epochs.m
spm_Fpdf.m
spm_hilbert.m
spm_swarp.m
spm_global.mexmaci64
spm_eeg_artefact_heartbeat.m
spm_lg_gamma.m
spm_eeg_filter.m
spm_erode.m
spm_Bpdf.m
spm_dcm_reduce.m
spm_cat_struct.m
spm_mvb_cvk_display.m
spm_dcm_bma_results.m
spm_eeg_morlet.m
spm_int_L.m
spm_get_lm.mexw64
spm_eeg_dipoles_ui.m
spm_eeg_regressors_movement_ctf.m
spm_length.m
spm_design_flexible.m
spm_gx_fmri.m
spm_nlsi_GN_H.m
spm_morlet_conv.m
spm_ssm2s.m
spm_barh.m
spm_unlink.mexw32
spm_figure.m
spm_vb_glmar.m
spm_preproc8.m
spm_render_vol.m
spm_diag.m
spm_bireduce.m
spm_uc_FDR.m
spm_write_plane.m
spm_dicom_essentials.m
spm_mvb_ui.m
spm_mesh_get_lm.m
spm_orthviews.m
spm_Volt_W.m
spm_krutil.mexa64
spm_minmax.m
spm_summarise.m
spm_int_J.m
spm_render_vol.mexw64
spm_t2z.m
spm_eeg_firstlevel.m
spm_cat.m
spm_dx_eig.m
spm_bsplins.mexw64
spm_copy.m
spm_vb_Fn.m
spm_eeg_inv_vbecd_gui.m
spm_bayes2_logbf.m
spm_fp_fmin.m
spm_eeg_inv_image_display.m
spm_get_lm.mexmaci64
spm_conv_vol.mexmaci64
spm_LAP.m
spm_bwlabel.mexw32
spm_eeg_inv_vbecd_getLF.m
spm_int_D.m
spm_est_V.m
spm_P.m
spm_mesh_utils.mexa64
spm_jsonread.m
spm_dcm_post_hoc_old.m
spm_eeg_review_switchDisplay.m
spm_eeg_mask2channels.m
spm_dcm_graph.m
spm_DesRep.m
spm_beta_compare.m
spm_dcm_sessions.m
tpm
labels_Neuromorphometrics.xml
spm_MH_reml.m
spm_hist.mexa64
spm_bsplins.mexa64
spm_invGcdf.m
spm_eeg_inv_results.m
spm_expm.m
spm_eeg_inv_mesh_ui.m
spm_dicom_metadata.m
spm_dcm_delay.m
spm_diff.m
spm_fx_fmri_linear.m
canonical
spm_mesh.man
iskull_2562.surf.gii
cortex_5124.surf.gii
oskull_2562.surf.gii
scalp_2562.surf.gii
spm_ADEM_set.m
spm_get_ons.m
spm_vb_gamma.m
spm_surf.m
spm_max.m
spm_sp.m
spm_DisplayTimeSeries.m
spm_get_lm.mexw32
spm_get_lm.mexa64
spm_vb_w.m
spm_deface.m
spm_int_E.m
spm_existfile.mexmaci64
spm_logdet.m
spm_eeg_definetrial.m
spm_bilinear.m
spm_eeg_lgainmat.m
spm_diffeo.mexmaci64
spm_non_sphericity.m
spm_eeg_inv_results_display.m
spm_invTcdf.m
spm_eeg_cfc.m
spm_dcm_contrasts.m
spm_get_data.m
spm_gx_fmri_linear.m
spm_bms_partition.m
spm_file.m
spm_Gcdf.m
spm_bsplins.mexmaci64
spm_mesh_to_grid.m
spm_P_clusterFDR.m
spm_dcm_generate.m
compat
spm_load_float.m
spm_imcalc_ui.m
spm_mean_ui.m
loadxml.m
spm_dirichlet.m
spm_eeval.m
spm_atranspa.m
spm_digamma.m
spm_adjmean_ui.m
spm_adjmean_fmri_ui.m
spm_read_hdr.m
spm_spm_ui.m
savexml.m
spm_chi2_plot.m
spm_tbx_config2cfg.m
spm_matlab_version_chk.m
spm_fMRI_design_show.m
spm_resss.m
spm_s2csd.m
spm_eeg_assemble_priors.m
spm_percentile.m
spm_DEM.m
spm_interp.m
spm_jobman.m
spm_eeg_inv_forward_ui.m
spm_mesh_clusters.m
spm_uw_show.m
spm_browser.m
spm_eeg_artefact_peak2peak.m
spm_int_ode.m
spm_dcm_connectivity_ui.m
spm_voronoi.mexw64
spm_eeg_invert_bma.m
spm_LAPF.m
spm_eeg_inv_group.m
spm_mesh_detect.m
EEGtemplates
ant128.sfp
Neuromag306_EEG70.mat
CTF275_setup.mat
61channels.mat
egi128_GSN_HydroCel.sfp
egi128_GSN.sfp
ext1020.sfp
cnt128.mat
fiducials.sfp
egi64_GSN_v1_0.sfp
biosemi128_FIL_montage.mat
egi256_GSN_HydroCel.sfp
egi32.sfp
egi64_GSN_HydroCel_v1_0.sfp
CTF151_setup.mat
biosemi128.sfp
egi65.mat
egi64_GSN_v2_0.sfp
egi256_GSN.sfp
biosemi64.sfp
spm_kl_gamma.m
spm_reml_ancova.m
spm_mvb_display.m
spm_eeg_specest_mtmconvol.m
spm_data_read.m
spm_hist2.mexw64
spm_mesh_utils.mexw32
spm_slice_vol.mexa64
spm_field.mexmaci64
spm_eeg_montage_ui.m
spm_phase_shuffle.m
spm_kernels.m
spm_write_residuals.m
spm_mesh_adjacency.m
spm_eeg_inv_help.m
spm_dcm_KL.m
spm_peb_ppi.m
spm_check_filename.m
spm_eeg_reduce_pca.m
spm_dilate_erode.mexw64
spm_reml.m
spm_existfile.mexw64
spm_vb_init_block.m
Contents.m
spm_unlink.mexa64
spm_plot_ci.m
spm_uitable.m
spm_nlsi_N.m
spm_update.m
README.txt
spm_bms_compare_groups.m
spm_project.mexw32
spm_sample_vol.mexa64
spm_field.mexw64
spm_input.m
spm_eeg_tf_rescale.m
spm_hist.m
spm_uncat.m
spm_eeg_review_callbacks.m
spm_DEM_eval.m
spm_dicom_headers.m
spm_log_evidence.m
spm_bms_display_vox.m
spm_Ce.m
spm_maff8.m
spm_eeg_render.m
spm_mvb_estimate.m
spm_krutil.mexmaci64
@gifti
struct.m
plot.m
subsref.m
export.m
saveas.m
Contents.m
private
Makefile
zstream.mexw64
zstream.mexw32
zstream.mexa64
read_freesurfer_file.m
obj_read.m
zstream.m
getdict.m
base64decode.m
zstream.c
base64encode.m
zstream.mexmaci64
read_gifti_file.m
mvtk_read.m
isintent.m
mvtk_write.m
save.m
subsasgn.m
gifti.m
display.m
fieldnames.m
isfield.m
spm_dicom_header.m
spm_jsonwrite.m
spm_DFP_plot.m
spm_dcm_fmri_csd.m
spm_str_manip.m
spm_mesh_curvature.m
spm_eeg_inv_custom_ui.m
spm_vb_logbf.m
spm_dcm_bmc.m
spm_eeg_regressors.m
spm_speye.m
config
spm_cfg_eeg_bc.m
spm_cfg_eeg_inv_optimize.m
spm_cfg_dcm_fmri.m
spm_cfg_mlb_preamble.m
spm_cfg_cdir.m
spm_cfg_print.m
spm_cfg_eeg_spatial_confounds.m
spm_cfg_eeg_average.m
spm_cfg_sendmail.m
cfg_mlbatch_appcfg.m
spm_cfg_eeg_epochs.m
spm_cfg_dcm_est.m
spm_cfg_ppi.m
spm_cfg_eeg_inv_invertiter.m
spm_cfg.m
spm_cfg_eeg_convert.m
spm_cfg_dicom.m
spm_cfg_con.m
spm_cfg_smooth.m
spm_cfg_bms_map.m
spm_run_norm.m
spm_run_dicom.m
spm_cfg_eeg_delete.m
spm_cfg_exp_frames.m
spm_run_dcm_bms_vis.m
spm_cfg_norm.m
spm_cfg_eeg_crop.m
spm_cfg_eeg_inv_priors.m
spm_cfg_dcm_bms.m
spm_run_coreg.m
spm_cfg_eeg_inv_extract.m
spm_cfg_eeg_prepare.m
spm_cfg_setlevel.m
spm_cfg_eeg_regressors.m
spm_run_voi.m
spm_cfg_eeg_combineplanar.m
spm_cfg_fmri_est.m
spm_make_manual.m
spm_cfg_md.m
spm_cfg_eeg_collapse_timefreq.m
spm_cfg_ecat.m
spm_run_setlevel.m
spm_rewrite_job.m
spm_cfg_eeg_copy.m
spm_cfg_fmri_data.m
spm_cfg_dcm_meeg.m
spm_cfg_minc.m
spm_cfg_eeg_inv_results.m
spm_cfg_model_review.m
spm_cfg_cat.m
spm_make_standalone.m
spm_run_fmri_est.m
spm_cfg_eeg_inv_patchdef.m
spm_cfg_eeg_downsample.m
spm_cfg_st.m
spm_run_reorient.m
spm_cfg_eeg_inv_headmodel.m
spm_cfg_parrec.m
spm_cfg_reorient.m
spm_cfg_eeg_montage.m
spm_run_st.m
spm_run_con.m
spm_run_bms_vis.m
spm_cfg_eeg_contrast.m
spm_cfg_disp.m
spm_run_tissue_volumes.m
spm_cfg_imcalc.m
spm_cfg_eeg_avgfreq.m
spm_cfg_realign.m
spm_run_results.m
spm_cfg_eeg_firstlevel.m
spm_run_realign.m
spm_cfg_render.m
spm_cfg_eeg.m
spm_cfg_eeg_inv_invert.m
spm_cfg_eeg_artefact.m
spm_cfg_factorial_design.m
spm_cfg_eeg_opmsetup.m
spm_cfg_eeg_inv_coregshift.m
spm_cfg_eeg_convert2images.m
spm_cfg_eeg_inv_post.m
spm_cfg_dcm_peb.m
spm_cfg_fmri_design.m
spm_run_fmri_spec.m
spm_cfg_deformations.m
spm_cfg_eeg_inv_mix.m
spm_cfg_fmri_spec.m
spm_run_dcm_bms.m
spm_cfg_eeg_channel_selector.m
spm_cfg_eeg_correct_sensor_data.m
spm_cfg_eeg_inv_headmodelhelmet.m
spm_cfg_eeg_merge.m
spm_cfg_split.m
spm_cfg_eeg_remove_bad_trials.m
spm_cfg_results.m
spm_cfg_eeg_grandmean.m
spm_cfg_eeg_fuse.m
spm_run_fmri_data.m
spm_cfg_coreg.m
spm_cfg_eeg_dipfit.m
spm_cfg_mfx.m
spm_run_realignunwarp.m
spm_cfg_eeg_inv_sensorshift.m
spm_cfg_eeg_filter.m
spm_cfg_eeg_review.m
spm_cfg_eeg_cfc.m
spm_cfg_tissue_volumes.m
spm_cfg_preproc8.m
spm_cfg_bbox.m
spm_cfg_checkreg.m
spm_cfg_eeg_inv_simulate.m
spm_cfg_eeg_tf_rescale.m
spm_cfg_realignunwarp.m
spm_cfg_voi.m
spm_cfg_eeg_tf.m
spm_run_factorial_design.m
spm_run_bms_map.m
spm_cfg_eeg_reduce.m
spm_cfg_eeg_avgtime.m
spm_run_smooth.m
spm_cfg_deface.m
spm_cfg_eeg_inv_prepro.m
spm_smoothto8bit.m
spm_Xpdf.m
spm_Ipdf.m
spm_bwlabel.mexmaci64
spm_dcm_fmri_mar.m
spm_coreg.m
spm_mip_ui.m
spm_eeg_regressors_chandata.m
spm_nlsi_GN.m
spm_dcm_fmri_csd_data.m
spm_inv_phi.m
spm_dcm_bmr.m
spm_eeg_invert_ui.m
spm_morlet.m
spm_templates.man
spm_dicom_text_to_dict.m
spm_fx_lz.m
spm_conv_vol.mexw64
spm_dem2dcm.m
spm_dcm_fmri_csd_results.m
spm_Fcdf.m
spm_ADEM_M_set.m
spm_slice_vol.mexw64
spm_eeg_review_uis.m
spm_Bcdf.m
spm_svd.m
spm_dcm_fmri_priors.m
spm_inv_spd.m
spm_clf.m
toolbox
OldSeg
spm_cfg_preproc.m
spm_preproc_write.m
spm_prep2sn.m
spm_sample_priors.m
spm_maff.m
spm_invdef.m
spm_run_preproc.m
spm_load_priors.m
spectral
spm_mar_gen.m
spm_ar_demo_spec.m
spm_ar.m
spm_csd2mar.m
spm_mar2csd.m
spm_ccf2mar.m
spm_pdc_demo.m
spm_csd2ccf.m
spm_ar_freq.m
spm_spectral_plot.m
spm_dtf2gew.m
spm_kl_eig_normal.m
spm_wavspec_demo.m
spm_rar_demo.m
spm_csd2coh.m
spm_mar_conn.m
spm_mar_pred.m
spm_rar.m
spm_ar_demo_coeff.m
spm_granger_demo.m
spm_granger.m
spm_csd.m
spm_mar_spectra.m
spm_ar_pred.m
spm_mar2ccf.m
spm_mar_demo.m
chirp.mat
spm_mar_prior.m
Contents.m
spm_wavspec.m
spm_ccf2gew.m
spm_csd2gew.m
spm_mar_spectra_demo.m
spm_gew_demo.m
spm_dpss.m
spm_ccf2csd.m
spm_mar.m
spm_get_omega.m
spm_mmtspec.m
mixture
spm_rglm_demo.m
yrep.mat
spm_glm.m
spm_mix_demo2d.m
spm_boxcars.m
spm_samp_gauss.m
spm_kmeans.m
Contents.m
spm_samp_mix.m
spm_kmeans1.m
spm_mix_demo.m
spm_mix_plot1d.m
spm_mix.m
spm_MNpdf.m
spm_mix_demo1d.m
spm_rglm.m
spm_mix_plot2d.m
FieldMap
Shoot
spm_def2sparse.m
spm_shoot_divergence.m
spm_shoot3d.m
spm_dotprods2.m
spm_shoot_blur.m
spm_shoot3d_nojac.m
spm_shoot_template.m
tbx_cfg_shoot.m
spm_GPclass.m
spm_shoot_update.m
covLin.m
spm_shoot_kernel.m
spm_lincom.m
spm_shoot3di.m
spm_shoot_defaults.m
spm_shoot_warp.m
spm_shoot_scalmom.m
spm_shoot_greens.m
mlm
demo_cva_order.m
spm_cva_compare.m
spm_mlm_makecon.m
spm_cva_prob.m
spm_mlm_posthoc.m
demo_mlm_priors.m
demo_vpca_small.m
spm_mlm_bayes.m
spm_vpca.m
spm_pca_order.m
demo_pca_order.m
spm_vpca_update.m
spm_vpca_f.m
demo_cva_params.m
spm_vpca_init.m
demo_vpca_big.m
demo_mlm_basic.m
demo_mlm_posthoc.m
OldNorm
spm_normalise.m
spm_run_normalise.m
spm_brainwarp.m
spm_brainwarp.mexw64
spm_get_orig_coord.m
spm_brainwarp.mexw32
spm_cfg_normalise.m
spm_brainwarp.mexa64
spm_write_sn.m
spm_affreg.m
spm_brainwarp.mexmaci64
spm_normalise_disp.m
DEM
spm_gx_adem_pursuit.m
spm_MDP_DEM.m
spm_mc_fx_3.m
DEM_demo_MDP_fit.m
ADEM_mountaincar_loss_2.m
ALAP_demo_attenuation.m
spm_soup.m
DEM_demo_induced_fMRI.m
DEM_demo_hdm.m
DEM_demo_DCM_LAP.m
DEMO_DCM_PEB_FIT.m
spm_dem_search_plot.m
spm_dem_set_movie.m
ADEM_learning_Q.m
FEP_MB_demo.m
DEM_demo_song_priors.m
DEM_demo_DEM.m
spm_DEM_MEG.m
DEM_birdsong.m
spm_dem_search_movie.m
spm_mountaincar_fun.m
DEM_demo_convolution.m
ADEM_lorenz_surprise.m
DEMO_VL.m
DEM_demo_hdm_LAP.m
spm_mc_fxa_4.m
DEM_spatial_deconvolution.m
spm_DEM_ERP_demo.m
ADEM_salience.m
DEMO_BAYES_FACTORS.m
spm_MDP_G.m
spm_dem_reach_plot.m
spm_DEM_movie.m
spm_MDP.m
spm_MDP_VB_LFP.m
spm_ADEM_cue_rt.m
ADEM_writing.m
spm_fx_adem_salience.m
spm_MDP_mountain_car.m
DEM_demo_Lorenz.m
ADEM_SHC_demo.m
spm_MDP_VB.m
DEM_lorenz.mat
spm_dem_pursuit_movie.m
DEM_self_MI_a.m
DEM_self_MI_c.m
spm_MDP_game_KL.m
spm_gx_hdm_sck.m
spm_gx_dem_reach.m
DEM_demo_DFP.m
DEMO_GROUP_PEB.m
spm_gx_dem_cue.m
spm_dem_initialise.m
DEM_demo_MMN.m
ADEM_lorenz_entropy.m
spm_cost_SHC_fxa.m
spm_ho_poly.m
DEM_demo_hierarchical_optmisation.m
spm_DEM_T.m
DEM_I3_and_TS.m
DEM_demo_LAP.m
DEM_demo_dendrite.m
FEP_physics.m
DEM_demo_MMN_gen.m
spm_mc_fxa_5.m
spm_DEM_basis.m
spm_mc_fx.m
spm_find_internal.m
spm_dem_ERP.m
ADEM_eyeblink.m
spm_gx_adem_write.m
BirdSong.mat
DFP_demo_double_well.m
spm_DEM_play.m
DEM_demo_convolution_LAP.m
spm_ADEM_set_rt.m
DEM_demo_ontology.m
DEM_demo_Gabor.m
DEMO_DCM_PEB_REC.m
DEM_demo_Posner.m
ADEM_response_set.m
spm_cost_SHC_fx.m
DEM_demo_contact_lens.m
spm_fx_mountaincar.m
spm_dem_reach_x2J.m
DEM_demo_duet.m
spm_dem_search_trajectory.m
spm_cornsweet.m
spm_MDP_VB_sleep.m
spm_MDP_VB_X.m
spm_cost_SHC_path.m
spm_ho_gm.m
lebi3.wav
DEM_demo_MMN_deviance.m
DEM_demo_Laplace.m
DEM_demo_MDP_rule.m
spm_MDP_game_optimism.m
DEM_demo_PEB.m
spm_gx_SHC.m
spm_dem_mdp_movie.m
spm_mc_loss_G.m
DEMO_SLR.m
ADEM_cost_SHC.m
DEM_demo_MDP_habits.m
spm_fx_dem_cue.m
FEP_Manifold.m
spm_DEM_M.m
spm_gx_adem_reach.m
DEM_demo_song_inference.m
DEMO_Lindley_paradox.m
ADEM_mountaincar_loss_4.m
spm_DEM_ButtonDownFcn.m
spm_cost_fxa.m
spm_fx_dem_pursuit.m
DEM_demo.m
DEM_demo_connectivity_fMRI.m
DEM_demo_MDP_search.m
spm_fx_Gabor.m
ADEM_reaching.m
DEM_demo_EM.m
DEM_demo_song_omission.m
spm_Manifold_solve.m
spm_MDP_VB_trial.m
spm_MDP_trust.m
FEP_self_entropy.m
ADEM_occlusion.m
ADEM_lorenz.m
DFP_demo_hdm.m
spm_fx_dem_write.m
ADEM_mountaincar_loss_5.m
DEM_demo_double_well.m
ADEM_observe.m
DEM_demo_Cornsweet.m
DEM_demo_Lagrangian_flow.m
ADEM_sample_image.m
DEMO_BMR_PEB.m
spm_MDP_L.m
DEM_SOC_paper.m
spm_SHC_fx.m
DEM_demo_modes_fMRI.m
spm_DEM_play_song.m
cornsweet_data.mat
spm_mc_fx_1.m
DEM_demo_doublewell_LAP.m
ADEM_mountaincar_loss.m
DEM_demo_texture.m
spm_mc_fx_4.m
spm_fx_adem_pursuit.m
spm_gx_dem_pursuit.m
DEM_demo_GF_and_KF.m
spm_fx_hdm_sck.m
ADEM_occulomotor_delays.m
spm_SCK.m
DEM_demo_MDP_DEM.m
spm_mc_fx_5.m
DEM_demo_MDP_maze.m
DEM_demo_MDP_fit_fields.m
DEM_demo_fMRI_PEB.m
spm_MDP_DP.m
spm_MDP_urn.m
spm_gx_dem_write.m
spm_gx_Gabor.m
spm_fx_mountaincar_Q.m
DEM_demo_MDP_reading.m
DEM_demo_GLM.m
DEM.m
spm_mc_fx_2.m
spm_gx_adem_cue.m
DEM_Q.mat
spm_fx_dem_reach.m
expmall.m
DEM_demo_MDP_X.m
ADEM_motor.m
spm_dem_reach_movie.m
ADEM_learning.m
DEM_demo_CM_Lorenz.m
DEM_demo_lorenz_LAP.m
spm_MDP_game.m
DEM_demo_SOC.m
spm_MDP_VB_game.m
spm_fx_adem_write.m
DEM_demo_OU.m
DEM_demo_face_inference.m
spm_gx_dem_salience.m
spm_diff_all.m
LAP_DEM.mat
spm_DEM_EEG.m
DEM_demo_hdm_SCK.m
ADEM_pursuit.m
spm_dem_cue_movie.m
DEM_demo_filtering.m
spm_MDP_check.m
DEM_cells_cells.m
DEMO_DCM_PEB.m
spm_dem_occlusion_movie.m
DEM_Dendrites.mat
spm_fx_adem_cue.m
spm_DEM_qC.m
DEM_demo_factor_analysis.m
DEM_evidence_accumulation.m
spm_MDP_plot.m
spm_fx_adem_reach.m
HDM.mat
ADEM_mountaincar_loss_1.m
DEM_demo.fig
DEM_demo_Bayesian_Model_Reduction.m
spm_MDP_VB_ERP.m
spm_mc_loss_C.m
DEMO_MDP_maze.m
spm_mountaincar_movie.m
spm_fx_Lagrangian.m
spm_MDP_log_evidence.m
ADEM_cued_response.m
DEM_get_faces.m
spm_MDP_offer.m
DEM_MDP_decision.m
spm_cost_fx.m
FEP_fluctuations.m
spm_fx_dem_observe.m
spm_meta_model.m
DEM_cells.m
DEM_demo_Lagrangian.m
spm_MDP_F.m
spm_gx_adem_salience.m
spm_mountaincar_Q.m
Posner.mat
ADEM_mountaincar_loss_3.m
DEM_morphogenesis.m
spm_fx_dem_salience.m
ADEM_visual.m
DEM_self_MI_b.m
ADEM_cost.m
DEM_demo_ALAP.m
ADEM_plaid.m
spm_salience_map.m
DEM_demo_large_fMRI.m
DARTEL
spm_norm_population.m
spm_dartel_invnorm.m
spm_dartel_resids.m
spm_dartel_warp.m
optimN.m
spm_dartel_dotprods.m
spm_dartel_norm.m
tbx_cfg_dartel.m
spm_dartel_import.m
spm_dartel_norm_fun.m
spm_dartel_jacobian.m
spm_dartel_template.m
optimNn.m
spm_dartel_smooth.m
optim_compat.m
spm_dartel_kernel.m
spm_klaff.m
dartel3.m
SRender
tbx_cfg_render.m
spm_sextract.m
spm_srender.m
mci
demo-models
mci_demo_linear.m
mci_demo_logistic.m
mci_demo_nmm.m
mci_demo_growth.m
mci_demo_lds.m
mci_demo_rphase.m
mci_demo_phase.m
mci_demo_approach.m
mci_demo_discount.m
models
discount
mci_discount_act.m
mci_discount_struct.m
mci_discount_like.m
mci_discount_deriv.m
mci_discount_gen.m
ramsay
mci_ramsay_gx.m
mci_ramsay_fx.m
mci_ramsay_gen.m
mci_ramsay_struct.m
logistic
mci_logistic_gen.m
mci_logistic_deriv.m
mci_logistic_struct.m
mci_logistic_like.m
mci_logistic_act.m
approach
mci_approach_gen.m
mci_approach_struct.m
mci_approach_like.m
mci_approach_deriv.m
linear
mci_linear_plot_fit.m
mci_linear_gen.m
mci_linear_deriv.m
mci_linear_struct.m
mci_linear_like.m
mci_linear_post.m
nmm
mci_nmm_gen.m
mci_nmm_fx_delay.m
mci_nmm_struct.m
mci_nmm_r2p2_fx.m
mci_nmm_r2_gx.m
mci_nmm_r2p2_dfdx.m
mci_nmm_r2p6_fx.m
mci_nmm_r2p2_dfdp.m
mci_nmm_params.m
growth
mci_pb_like.m
mci_pb_deriv.m
mci_pb_struct.m
mci_pb_gen.m
linsqr
mci_linsqr_gen.m
mci_linsqr_like.m
mci_linsqr_deriv.m
mci_linsqr_struct.m
lds
mci_lds_plot_fit.m
mci_lds_plot_params.m
mci_lds_gx.m
mci_lds_fx.m
mci_lds_params.m
mci_lds_gen.m
mci_lds_dfdx.m
mci_lds_par2lat.m
mci_lds_struct.m
mci_lds_lat2par.m
mci_interp_init.m
mci_lds_group_data.m
mci_exp_init.m
phase
mci_phase_gx.m
mci_rphase_gen.m
mci_phase_fx.m
mci_rphase_dfdx.m
mci_rphase_struct.m
mci_phase_dfdx.m
mci_phase_init.m
mci_phase_dfdp.m
mci_rphase_fx.m
mci_rphase_dfdp.m
Contents.m
demo-thermodynamic
mci_demo_ramsay_surface.m
mci_demo_linsqr.m
mci_demo_ti_compare.m
mci_demo_ti.m
mci_demo_ti_chains.m
ramsay-surface.mat
mci_demo_ramsay.m
mci_setpath.m
data
pima_tr.txt
README
pima_te.txt
synth_tr.txt
synth_te.txt
demo-group
mci_demo_rfx_logistic.m
mci_demo_rfx_nmm.m
mci_demo_rfx_linear.m
mci_demo_mfx_lds.m
mci_demo_rfx_rphase.m
gradients
spm_mci_sens_init.m
spm_mci_joint_grad.m
spm_mci_grad_curve.m
spm_mci_adjoint.m
spm_mci_sens.m
spm_mci_flow_sun.m
spm_mci_sens_sun.m
spm_mci_joint.m
mci_compare_setup.m
spm_mci_adjoint_sun.m
spm_mci_fwd.m
spm_mci_adjoint_int.m
spm_mci_flow_t.m
inference
spm_mci_glike_deriv.m
spm_mci_postslices.m
spm_mci_popdef.m
spm_mci_diff.m
spm_mci_switch_prep.m
spm_mci_report.m
spm_mci_obsnoise.m
spm_mci_mh_update.m
spm_mci_ess.m
spm_mci_lgv_vl.m
spm_mci_check.m
spm_mci_minit.m
spm_mci_like_ind.m
spm_mci_progress.m
spm_mci_glike.m
spm_mci_random.m
spm_mci_ais.m
spm_mci_mvnpost.m
spm_mci_update_cov.m
spm_mci_mvntest.m
spm_mci_ais_single_vl.m
spm_wishrnd.m
spm_mci_diag.m
spm_mci_vw_init.m
spm_mci_mh.m
spm_mci_mfx.m
spm_mvtpdf.m
spm_mci_gprior_deriv.m
spm_mci_pop.m
spm_mci_ais_single.m
spm_mci_fixed.m
spm_nwcov.m
spm_mci_phm.m
spm_mci_switch.m
spm_nwrnd.m
spm_mci_priors.m
spm_mci_post.m
spm_mci_isvl.m
spm_mci_quantiles.m
spm_mci_lgv.m
spm_mci_stat.m
spm_mci_init_flow.m
spm_nwpost.m
spm_mci_mfx_dynamic.m
plotting
mci_plot_surface.m
mci_plot_noiseSD.m
mci_plot_outputs.m
mci_plot_dist_multi.m
mci_plot_dist.m
demo-gradients
mci_compare_jacobians.m
mci_compare_sensitivities.m
mci_compare_forward.m
mci_compare_gradients.m
cat12
cat_stat_TIV.m
cat_conf_nonlin_coreg.m
cat_vol_laplace3R.c
cat_run_job_APP_SPM.m
cat_defaults.m
cat_conf_stools.m
cat_vol_genus0.mexw64
cat_parallelize.m
cat_vol_slice_overlay_rgb_ui.m
cat_io_xml2csv.m
cat_vol_eidist.c
cat_vbdist.mexglx
cat_io_remat.m
cat_vol_simgrow.mexa64
cat_ornlm.c
tricases.h
templates_surfaces
templates_surfaces.man
cat_io_csv.m
cat_vol_pbtp.cpp
cat_run_job1070.m
cat_vol_imcalc.m
cat_vol_simgrow.mexglx
genus0.c
cat_vol_resize.m
cat_vol_laplace3.mexmaci64
cat_vol_gradient3.mexmaci64
cat_surf_results.m
cat_io_volctype.m
cat_io_handle_pre.m
cat_vol_interp3f.cpp
cat_vol_simgrow.mexw64
cat_vbdist.mexa64
cat_io_FreeSurfer.m
cat_vol_correct_slice_scaling.m
CAT.maci64
.DS_Store
cat_tst_qa_cleaner.m
spm_cat12.m
cat_vol_series_align.m
cat_run.m
cat_io_strrep.m
cat_check_system_output.m
cat_amap.mexglx
cat_surf_avg.m
atlases_surfaces
atlases_surfaces.man
cat_surf_vol2surf.m
cat_surf_render2.m
cat_batch_long.sh
cat_vol_eikonal3.mexw32
cat_ornlm.mexmaci
cat_io_checkinopt.m
cat_stat_nanmean.m
cat_vol_atlas.m
cat_vol_laplace3.mexw32
ornlm_float.c
cat_sanlm.mexw64
cat_plot_boxplot.m
cat_vol_div.m
Amap.c
cat_io_seg2cgw.m
cat_run_job.m
cat_vol_reduceRes.m
cat_main_gcut_DEV.m
cat_vol_ROIval.c
cat_vol_downcut.mexw32
cat_vol_laplace3.mexw64
cat_vol_ROIval.mexmaci64
cat_surf_gyrification.m
cat_vol_urqio.m
cat_vbdist.mexw64
cat_surf_surf2roi.m
CAT.glnx86
.DS_Store
cat_surf_info.m
cat_io_struct2table.m
Contents.txt
cat_vol_interp3f.mexw32
cat_plot_circular.m
cat_vol_morph.m
cat_vol_pbtp.mexglx
cat_surf_resamp.m
cat_tst_CJV.m
cat_vol_partvol.m
sanlm_float.c
genus0.h
cat_run_job_APP_final.m
cat_vbdist.c
kmeans3D.m
cat_vol_interp3f.mexa64
cat_vol_median3.mexmaci64
cat12.m
cat_vol_pbtp.mexa64
cat_vol_findfiles.m
cat_vol_gradient3.mexglx
cat_batch_long.m
cat_batch_spm.m
cat_sanlm.c
cat_vol_interp3f.mexglx
cat_vol_nonlin_coreg.m
cat_conf_stoolsexp.m
cat_vol_laplace3R.mexa64
cat_vol_genus0.mexa64
cat_surf_fun.m
cat_vol_median3.mexa64
cat_vol_eidist.mexw32
cat_surf_createCS.m
cat_io_matlabversion.m
cat_vol_median3c.mexmaci64
cat_vol_laplace3.c
cat_main.m
cat_vol_simgrow.mexmaci64
cat_get_defaults.m
cat_stat_showslice_all.m
cat_main_gintnormi.m
cat_conf_extopts.m
cat_stat_factorial_design.m
cat_tst_BWPsliceartifact.m
Amap.h
cat_vol_laplace3R.mexw64
templates_1.50mm
mori.csv
labels_dartel_aal.xml
mori.txt
aal.csv
labels_dartel_ibsr.xml
labels_dartel_cobra.xml
neuromorphometrics.txt
lpba40.txt
labels_dartel_lpba40.xml
cobra.txt
aal.txt
.DS_Store
templates.man
hammers.csv
hammers.txt
cobra.csv
anatomy.txt
lpba40.csv
labels_dartel_hammers.xml
ibsr.txt
neuromorphometrics.csv
ibsr.csv
labels_dartel_mori.xml
anatomy.csv
labels_dartel_neuromorphometrics.xml
cat_vol_laplace3.mexa64
cat_spm_smoothto8bit.m
cat_vbdist.mexmaci64
cat_ornlm.mexa64
cat_vol_downcut.mexw64
Contents.m
cat_vol_eikonal3.c
cat_surf_smooth.m
cat_roi_fun.m
cat_vol_gradient3.mexw32
cat_vol_gradient3.mexw64
cat_main_gcut.m
cat_vol_median3c.mexglx
cat_spm_preproc_run.m
cat_vol_eidist.mexmaci64
cat_tst_staple_multilabels.m
cat_vol_gradient3.c
cat_vol_median3c.mexa64
cat_surf_resamp_freesurfer.m
cat_vol_laplace3.mexglx
cat_vol_pbt.m
vollib.c
cat_main_cleanup.m
cat_main_registration.m
cat_long_multi_run.m
cat_io_cprintf.m
cat_vol_defs.m
cat_ornlm.mexmaci64
cat_conf_tools.m
cat_sanlm.mexa64
cat_surf_calc.m
cat_stat_nanstat1d.m
cat_vol_median3.mexw64
cat_vol_simgrow.mexw32
Kmeans.c
cat_amap.mexa64
cat_vbdist.mexw32
cat_vol_eidist.mexa64
cat_vol_localstat.mexw64
cat_io_cgw2seg.m
cat_long_APP.m
cat_vol_median3.mexglx
cat_display_matlab_PID.m
cat_surf_render.m
cat_vol_average.m
cat_batch_cat.sh
cat_vol_genus0.mexmaci64
cat_debug.m
cat_vol_ctype.m
cat_vol_grad.m
cat_vol_localstat.mexa64
cat_ornlm.m
cat_vol_slice_overlay_ui.m
cat_vol_localstat.mexmaci64
cat_vol_interp3f.mexmaci64
cat_conf_opts.m
cat_run_oldcatch.m
cat_vol_localstat.mexw32
cat_vol_downcut.mexa64
cat_vol_eikonal3.mexa64
cat_vol_sanlm.m
INSTALL.txt
cat_version.m
cat_main_LASs.m
cat_vol_laplace3R.mexglx
cat_amap.mexw64
cat_vol_groupwise_ls.m
cat_ornlm.mexw64
cat_surf_epivolsurf.m
cat_vol_eikonal3.mexmaci64
cat_vol_pbtp.mexw64
cat_surf_GI3D.m
cat_system.m
cat_install_atlases.m
MrfPrior.c
cat_surf_display.m
cat_vol_pbtp.mexmaci64
slice_overlay.m
cat_vol_nanmean3.m
cat_vol_simgrow.c
cat_io_report.m
cat_vol_eikonal3.mexw64
cat_stat_marks.m
cat_io_3Dto4D.m
cat_amap.mexw32
cat_spm_affreg.m
cat_vol_qa.m
cat_run_job_APP_init1070.m
cat_amap.mexmaci64
cat_vol_genus0.mexglx
cat_long_main.m
cat_stat_check_SPM.m
cat_vol_smooth3X.m
cat_roi_roi2surf.m
cat_vol_genus0.c
cat_stat_nanstd.m
cat_stat_analyze_ROIs.m
cat_io_writenii.m
cat_surf_parameters.m
cat_vol_eidist.mexglx
cat_tst_calc_kappa.m
cat_stat_IQR.m
cat_vol_downcut.c
cat_vol_eikonal3.mexglx
cat_vol_display_label.m
cat_sanlm.mexw32
cat_stat_nansum.m
cat_vol_laplace3R.mexmaci64
cat_sanlm.mexmaci64
cat_vol_median3c.mexw64
cat_vol_isarnlm.m
cat_amap.m
cat_surf_coregvol2surf.m
distribute_to_server.sh
cat_vol_eidist.mexw64
cat_sanlm.mexglx
cat_io_xml.m
cat_stat_diff.m
cat_stat_spm.m
sliderPanel.m
cat_conf_long.m
tbx_cfg_cat.m
cat_ornlm.mexw32
cat_stat_calc_stc.m
cat_sanlm.m
cat_run_newcatch.m
cat_vol_set_com.m
cat_io_senderrormail.m
cat_stat_nanmedian.m
cat_io_addwarning.m
cat_run_job_APP_init.m
cat_vol_downcut.mexglx
cat_vol_laplace3R.mexw32
cat_vol_localstat.mexglx
cat_update.m
cat_io_img2nii.m
cat_tst_cattest.m
cat_io_cmd.m
cat_stat_cva_ui.m
cat_vol_downcut.mexmaci64
cat_vol_approx.m
cat_ornlm.mexglx
cat_stat_spm2x.m
cat_vol_iscaling.m
cat_main_gintnorm.m
cat_io_updateStruct.m
cat_vol_nonlin_coreg_multi_run.m
cat_vol_median3c.c
cat_amap.c
cat_vol_genus0.mexw32
cat_stat_polynomial.m
cat_vol_slice_overlay2.m
cat_surf_rename.m
cat_io_mergeStruct.m
cat_batch_cat.m
cat_vol_median3.c
cat_vol_gradient3.mexa64
cat_vol_median3.mexw32
cat_io_colormaps.m
cat_stat_check_cov.m
Pve.c
cat_surf_max.m
cat_vol_iscale.m
cat_vol_localstat.c
cat_main_LAS.m
cat_surf_flipsides.m
cat_vol_median3c.mexw32
CAT.w32
cat_batch_spm.sh
cat_vol_slice_overlay.m
cat_vol_pbtp.mexw32
cat_check.m
spm_mrf.mexa64
spm_mvb_U.m
spm_dcm_sparse.m
spm_eeg_inv_visu3D_api.fig
spm_eeg_average.m
spm_data_hdr_read.m
spm_sample_priors8.m
spm_dirichlet_exceedance.m
spm_vb_beta.m
spm_check_orientations.m
spm_progress_bar.m
spm_dx.m
spm_dcm_evidence.m
spm_vol_nifti.m
spm_DEM_R.m
spm_dartel_integrate.m
spm_diffeo.mexw64
spm_gamrnd.mexmaci64
spm_gen_fmri.m
spm_eeg_inv_extract_ui.m
spm_eeg_reduce.m
spm_Ppdf.m
spm_csd_fmri_gu.m
spm_eeg_inv_forward.m
spm_vb_edgeweights.m
spm_platform.m
spm_mesh_label.m
spm_eeg_inv_vbecd_disp.m
spm_global.mexa64
spm_LAP_iS.m
spm_Volterra.m
spm_ALAP.m
spm_extract_files.m
spm_nlsi_Newton.m
spm_log_evidence_reduce.m
spm_cat.mexmaci64
spm_Pcdf.m
spm_ADEM_diff.m
spm_eeg_wrap_dipfit_vbecd.m
spm_eeg_inv_checkforward.m
spm_unvec.m
spm_dicom_convert.m
spm_hrf.m
spm_fx_fmri.m
spm_bsplinc.m
spm_orthpoly.m
spm_write_vol.m
spm_Ncdf_jdw.m
spm_fieldindices.m
spm_P_Bonf.m
spm_vb_set_priors.m
spm_fmin.m
spm_eeg_montage.m
spm_dcm_fmri_csd_gen.m
spm_spm_Bayes.m
spm_fileparts.m
spm_P_RF.m
spm_Icdf.m
spm_diag_array.m
spm_dcm_peb_rnd_search.m
spm_invXcdf.m
spm_eeg_inv_imag_api.m
spm_bsplinc.mexmaci64
spm_Tcdf.m
spm_DesMtx.m
spm_dilate_erode.mexmaci64
spm_voronoi.m
spm_DEM_z.m
spm_mesh_distmtx.m
spm_hist.mexmaci64
spm_existfile.mexa64
spm_mesh_calc.m
spm_vb_roi_basis.m
spm_dcm_average.m
spm_Tpdf.m
spm_get_vc.m
spm_vb_ppm_anova.m
spm_iwft.m
spm_eeg_inv_check.m
spm_eeg_modality_ui.m
spm_kl_dirichlet.m
spm_eeg_spatial_confounds.m
spm_vb_alpha.m
spm_eeg_inv_fmripriors.m
spm_eeg_regressors_tfpower.m
spm_eeg_inv_datareg_ui.m
spm_z2p.m
spm_sample_vol.m
spm_resels_vol.mexw32
spm_eeg_inv_datareg.m
spm_eeg_copy.m
spm_render_vol.mexw32
spm_nlsi.m
spm_eeg_convert.m
spm_standalone.m
spm_robust_average.m
spm_design_contrasts.m
spm_uitab.m
spm_help.m
spm_vb_lambda.m
spm_vb_adjacency.m
spm_cat.mexa64
spm_bms_ttest.m
spm_file_template.m
spm_eeg_inv_mesh.m
spm_field.m
spm_BMS_F_smpl.m
spm_ECdensity.m
spm_DEM_F.m
spm_mrdivide.m
spm_inline2func.m
spm_file_ext.m
spm_mrf.mexw32
spm_krutil.mexw64
spm_conv_vol.mexw32
spm_phi_dot.m
spm_mesh_resels.m
spm_eeg_reduce_cva.m
spm_spm.m
spm_reslice.m
spm_wft.m
spm_hanning.m
@meeg
copy.m
move.m
repl.m
events.m
sconfounds.m
selectchannels.m
sensors.m
reload.m
indtrial.m
fullfile.m
ftraw.m
badchannels.m
indchantype.m
montage.m
subsref.m
nchannels.m
modality.m
condlist.m
nsamples.m
meeg.m
nfrequencies.m
indfrequency.m
fttimelock.m
fnamedat.m
type.m
time.m
fsample.m
indsample.m
Contents.m
coor2D.m
private
getset.m
checkmeeg.m
match_str.m
fixpnt.m
warning_flexible.m
save.m
subsasgn.m
ntrials.m
rmfield.m
history.m
units.m
delete.m
display.m
chanlabels.m
badsamples.m
unlink.m
isequal.m
badtrials.m
conditions.m
link.m
fiducials.m
fieldnames.m
frequencies.m
nconditions.m
path.m
indchannel.m
islinked.m
timeonset.m
fname.m
trialtag.m
clone.m
blank.m
getfield.m
size.m
trialonset.m
isfield.m
isempty.m
rmdata.m
transformtype.m
selectdata.m
chantype.m
check.m
spm_get_dataset.m
spm_eeg_inv_spatnorm.m
spm_vb_get_Ab.m
spm_dcm_estimate.m
spm_pf.m
spm_MH.m
spm_atlas.m
spm_Dpdf.m
spm_bms_test_null.m
LICENCE.txt
spm_dcm_bma.m
spm_mvb_R2.m
spm_PEB.m
spm_dcm_fmri_nmm.m
spm_reorder_contrasts.m
spm_diffeo.m
spm_eeg_artefact_events.m
spm_fx_poly.m
spm_mesh_transform.m
spm_invIcdf.m
spm_bsplinc.mexw32
spm_fmri_concatenate.m
spm_preproc.m
spm_data_hdr_write.m
spm_gamrnd.m
spm_api_bmc.m
spm_bwlabel.mexw64
spm_unlink.mexw64
spm_DEM_generate.m
spm_dcm_display.m
spm_vb_incidence.m
spm_tests.m
spm_dcm_compare.m
spm_gamrnd.mexw32
spm_add.mexa64
spm_eeg_bc.m
spm_eeg_read_bsa.m
spm_add.m
spm_vb_graphcut.m
spm_voronoi.mexmaci64
spm_changepath.m
spm_get_def.m
spm_DEM_qH.m
spm_dcm_peb_test.m
spm_hist2.mexmaci64
spm_dcm_graph_functional.m
spm_fp_display_density.m
spm_Pec_resels.m
spm_diffeo.mexw32
spm_project.mexw64
spm_mesh_normals.m
spm_dftmtx.m
spm_diffeo.mexa64
spm_flip_analyze_images.m
spm_clusters.m
spm_get_matdim.m
spm_dcm_search.m
spm_dcm_specify.m
spm_perm_mtx.m
matlabbatch
cfg_findspec.m
@cfg_intree
display.m
disp.m
cfg_intree.m
@cfg_const
subsref.m
showdetail.m
private
mysubs_fields.m
subsasgn.m
cfg2struct.m
cfg_const.m
subs_fields.m
showdoc.m
gencode.m
subsasgn_check_valcfg.m
cfg_ui_util.m
gencode_rvalue.m
@cfg_inv_out
cfg_inv_out.m
subsasgn_check_funhandle.m
cfg_mlbatch_appcfg.m
@cfg_repeat
subsref_job.m
update_deps.m
gencode_item.m
initialise.m
subsref.m
all_leafs.m
showmydoc.m
harvest.m
showdetail.m
subsasgn_job.m
subsasgn_check.m
cfg_repeat.m
checksubs_job.m
tagnames.m
private
mysubs_fields.m
expand.m
subsasgn.m
treepart.m
gettag.m
all_set.m
list.m
setval.m
fillvals.m
cfg2jobsubs.m
fieldnames.m
cfg2struct.m
subs_fields.m
tag2cfgsubs.m
showdoc.m
clearval.m
val2def.m
all_set_item.m
@cfg_branch
subsref_job.m
update_deps.m
initialise.m
subsref.m
cfg_branch.m
all_leafs.m
showmydoc.m
harvest.m
showdetail.m
subsasgn_job.m
subsasgn_check.m
checksubs_job.m
tagnames.m
private
mysubs_fields.m
expand.m
subsasgn.m
treepart.m
all_set.m
list.m
setval.m
fillvals.m
cfg2jobsubs.m
cfg2struct.m
subs_fields.m
tag2cfgsubs.m
showdoc.m
clearval.m
val2def.m
all_set_item.m
@cfg_entry
cfg_entry.m
gencode_item.m
subsref.m
match.m
showdetail.m
subsasgn_check.m
private
mysubs_fields.m
subsasgn.m
fieldnames.m
cfg2struct.m
subs_fields.m
showdoc.m
@cfg_leaf
display.m
cfg_leaf.m
disp.m
gencode_substruct.m
@cfg_mchoice
subsref_job.m
update_deps.m
gencode_item.m
initialise.m
subsref.m
all_leafs.m
showmydoc.m
harvest.m
showdetail.m
subsasgn_job.m
subsasgn_check.m
checksubs_job.m
tagnames.m
cfg_mchoice.m
private
mysubs_fields.m
expand.m
subsasgn.m
treepart.m
all_set.m
list.m
setval.m
fillvals.m
cfg2jobsubs.m
fieldnames.m
cfg2struct.m
subs_fields.m
tag2cfgsubs.m
showdoc.m
clearval.m
val2def.m
all_set_item.m
examples
cfg_example_run_add1.m
cfg_example_cumsum1.m
cfg_mlbatch_appcfg.m.example
cfg_example_add2.m
cfg_example_master.m
batch_example_add1_div_reuse_b_outname.m
cfg_example_div.m
batch_example_add1_div_reuse_b.m
cfg_example_sum.m
cfg_example_run_div.m
cfg_example_cumsum2.m
cfg_example_run_cumsum2.m
cfg_example_run_sum.m
toy_example.m
cfg_example_run_cumsum1.m
batch_example_add1_div.m
cfg_example_add1.m
cfg_example_run_add2.m
batch_example_add1.m
cfg_serial.m
@cfg_dep
update_deps.m
gencode.m
cfg_dep.m
subsref.m
isequaltarget.m
add_to_source.m
isequalsource.m
ctranspose.m
del_in_source.m
private
mysubs_fields.m
subsasgn.m
display.m
disp.m
subs_fields.m
dep_add.m
del_in_target.m
gencode_substructcode.m
@cfg_exbranch
cfg_exbranch.m
update_deps.m
gencode_item.m
subsref.m
harvest.m
showdetail.m
subsasgn_check.m
private
mysubs_fields.m
subsasgn.m
display.m
disp.m
fieldnames.m
cfg2struct.m
subs_fields.m
@cfg_menu
gencode_item.m
subsref.m
showdetail.m
subsasgn_check.m
private
mysubs_fields.m
subsasgn.m
setval.m
fieldnames.m
cfg2struct.m
subs_fields.m
cfg_menu.m
showdoc.m
cfg_callbuiltin.m
subsasgn_check_num.m
cfg_dbstop.m
help2cell.m
private
inputdlg.m
getnicedialoglocation.m
cfg_ui_disable.m
README.inputdlg.txt
cfg_textfill.m
int2str.m
cfg_justify.m
num2str.m
cfg_run_cm.m
setdefaultbutton.m
cfg_mlbatch_root.m
cfg_ui_getListboxTop.m
cfg_util_persistent.m
copyright_spm.m
listdlg.m
copyright_cfg.m
cfg_onscreen.m
cfg_maxextent.m
cfg_mlbatch_defaults.m
cfg_eval_valedit.m
requestJavaAdapter.m
cfg_disp_error.m
cfg_ui_restore.m
@cfg_item
subsref_job.m
update_deps.m
gencode.m
gencode_item.m
resolve_deps.m
initialise.m
subsref.m
match.m
all_leafs.m
docheck.m
harvest.m
showdetail.m
subsasgn_job.m
subsasgn_check.m
private
mysubs_fields.m
expand.m
subsasgn.m
horzcat.m
cfg_item.m
cat.m
gettag.m
all_set.m
list.m
display.m
setval.m
fillvals.m
subsasgn_checkstr.m
disp.m
cfg2jobsubs.m
fieldnames.m
cfg2struct.m
subs_fields.m
tag2cfgsubs.m
showdoc.m
clearval.m
val2def.m
vertcat.m
all_set_item.m
cfg_getfile.m
cfg_txtdesc2cfg.m
cfg_tropts.m
cfg_util.m
cfg_get_defaults.m
cfg_load_jobs.m
cfg_ui.m
cfg_job.m
matlabbatch.man
cfg_ui_multibatch.fig
cfg_basicio
cfg_run_gzip_files.m
cfg_run_runjobs.m
cfg_vout_save_vars.m
src
batch_basicio_codegen.m
02_var_ops
batch_basicio_toplevel.m
batch_basicio_14_assignin.m
batch_basicio_12_save_vars.m
batch_basicio_10_named_input.m
batch_basicio_13_subsrefvar.m
batch_basicio_11_load_vars.m
batch_basicio_toplevel.m
01_file_dir_ops
batch_basicio_08_fileparts.m
batch_basicio_toplevel.m
01_dir_ops
batch_basicio_toplevel.m
batch_basicio_04_named_dir.m
batch_basicio_03_mkdir.m
batch_basicio_02_cd.m
02_file_ops
batch_basicio_01_file_move.m
batch_basicio_toplevel.m
batch_basicio_06_file_fplist.m
batch_basicio_03_gunzip_files.m
batch_basicio_05_named_file.m
batch_basicio_07_file_filter.m
batch_basicio_02_gzip_files.m
batch_basicio_09_file_split.m
03_run_ops
batch_basicio_15_runjobs.m
batch_basicio_toplevel.m
batch_basicio_16_call_matlab.m
create_cfg_cfg_basicio.m
cfg_vout_file_filter.m
cfg_vout_gunzip_files.m
cfg_vout_named_dir.m
cfg_run_named_file.m
cfg_run_assignin.m
cfg_vout_named_input.m
cfg_vout_file_move.m
cfg_run_fileparts.m
cfg_cfg_basicio_def.m
cfg_run_mkdir.m
cfg_run_gunzip_files.m
cfg_vout_mkdir.m
cfg_run_call_matlab.m
cfg_vout_dir_move.m
cfg_run_subsrefvar.m
cfg_run_named_dir.m
cfg_run_file_move.m
cfg_vout_runjobs.m
cfg_cfg_basicio.m
cfg_run_cd.m
cfg_vout_file_fplist.m
cfg_check_assignin.m
cfg_run_file_filter.m
cfg_run_save_vars.m
cfg_vout_file_split.m
cfg_run_file_split.m
cfg_vout_named_file.m
cfg_run_file_fplist.m
cfg_run_dir_move.m
cfg_load_vars.m
cfg_basicio_rewrite.m
cfg_vout_gzip_files.m
cfg_vout_fileparts.m
cfg_run_named_input.m
hgsave_pre2008a.m
@cfg_files
gencode_item.m
subsref.m
match.m
showdetail.m
subsasgn_check.m
private
mysubs_fields.m
subsasgn.m
cfg_files.m
fieldnames.m
cfg2struct.m
subs_fields.m
@cfg_choice
subsref_job.m
update_deps.m
gencode_item.m
initialise.m
subsref.m
all_leafs.m
showmydoc.m
harvest.m
showdetail.m
subsasgn_job.m
subsasgn_check.m
checksubs_job.m
cfg_choice.m
tagnames.m
private
mysubs_fields.m
expand.m
subsasgn.m
treepart.m
all_set.m
list.m
setval.m
fillvals.m
cfg2jobsubs.m
fieldnames.m
cfg2struct.m
subs_fields.m
tag2cfgsubs.m
showdoc.m
clearval.m
val2def.m
all_set_item.m
cfg_confgui
cfg_run_template.m
cfg_confgui.m
cfg_message.m
cfg_struct2cfg.m
cfg_ui_multibatch.m
cfg_ui.fig
spm_resels_vol.m
spm_dcm_mtf.m
spm_soreduce.m
spm_searchlight.m
spm_rand_mar.m
spm_get_volumes.m
spm_squeeze.m
spm_mesh_render.m
spm_dcm_mdp.m
spm_DEM_diff.m
spm_design_factorial.m
spm_mvb_cvk.m
spm_slice_vol.mexmaci64
spm_ecat2nifti.m
spm_uc_RF.m
@slover
get_pos.m
fill_defaults.m
subsref.m
slover.m
add_matrix.m
paint.m
print_fig.m
private
actc.mat
pr_blobs2vol.m
x_rain.lut
x_hot.lut
pr_volmaxmin.m
flow.lut
hotiron.lut
pr_scaletocmap.m
nih_fire.lut
spectrum.lut
nih_ice.lut
pr_getcmap.m
ge_color.lut
pr_matrix2vol.m
mars_struct.m
pr_get_spm_results.m
blackbdy.lut
rainramp.lut
pr_basic_ui.m
nih.lut
cardiac.lut
gold.lut
subsasgn.m
display.m
point_vals.m
add_spm.m
add_blobs.m
bin
spm12-octave
spm12-matlab
spm12-mcr
spm_file_merge.m
spm_eeg_fuse.m
spm_unlink.m
spm_eeg_specest_mtmfft.m
spm_mkdir.m
spm_Q.m
spm_create_vol.m
@xmltree
copy.m
move.m
find.m
set.m
setfilename.m
get.m
convert.m
view.m
add.m
char.m
attributes.m
getfilename.m
length.m
Contents.m
private
Makefile
xml_findstr.mexw64
xml_findstr.c
xml_findstr.mexa64
xml_findstr.mexw32
xml_parser.m
xml_findstr.m
xml_findstr.mexmaci64
save.m
xmltree.m
root.m
delete.m
display.m
editor.m
children.m
flush.m
isfield.m
parent.m
branch.m
spm_global.m
spm_eeg_reduce_imagcsd.m
spm_powell.m
spm_eeg_inv_checkdatareg.m
spm.m
spm_dcm_peb_review.m
spm_mesh_split.m
spm_eeg_plotScalpData.m
spm_mean.m
spm_eeg_artefact.m
spm_vb_a.m
spm_eeg_avgtime.m
spm_robust_glm.m
spm_mesh_neighbours.m
spm_LAP_F.m
spm_mesh_contour.m
spm_sample_vol.mexw32
spm_est_smoothness.m
spm_eeg_inv_mesh_spherify.m
spm_bms_display_ROI.m
spm_eeg_inv_transform_mesh.m
spm_get_defaults.m
spm_dcm_U.m
spm_authors.m
spm_eeg_inv_prep_modes_xval.m
spm_eeg_invertiter.m
spm_data_write.m
spm_jsonread.mexw64
spm_MDP_da.m
spm_write_filtered.m
spm_dcm_loo.m
spm_load_priors8.m
spm_kl_wishart.m
spm_BMS_gibbs.m
spm_get_image_def.m
spm_eeg_inv_headcoordinates.m
spm_ar_reml.m
spm_bsplinc.mexw64
spm_match_str.m
spm_grid.mat
spm_trace.m
spm_dcm_bmr_all.m
spm_check_version.m
spm_Xcdf.m
spm_BMS.m
spm_eeg_correct_sensor_data.m
spm_dctmtx.m
spm_LAP_eval.m
spm_matrix.m
spm_uw_apply.m
spm_mfx.m
spm_hist2.m
spm_dcm_ui.m
spm_dcm_ppd.m
spm_eeg_project3D.m
spm_sample_vol.mexmaci64
spm_cond_units.m
spm_dcm_sparse_priors.m
spm_dcm_peb_to_gcm.m
spm_dcm_diagnose.m
spm_design_within_subject.m
spm_unlink.mexmaci64
spm_eeg_convert2images.m
spm_mrf.mexw64
spm_axis.m
spm_conv_vol.m
spm_eeg_downsample.m
spm_large_dcm_reduce.m
spm_fmri_spm_ui.m
spm_ekf.m
spm_grid.m
spm_dcm_optimise.m
spm_orientations.m
spm_load.m
spm_eeg_artefact_saccade.m
spm_mesh_edges.m
spm_eeg_specest_morlet.m
spm_select.m
spm_fp.m
spm_eeg_artefact_threshchan.m
spm_plot_convergence.m
spm_list.m
spm_MH_reml_likelihood.m
spm_LAPS.m
spm_DEM_embed.m
spm_eeg_mask.m
spm_kl_normal.m
spm_eeg_history.m
spm_project.mexmaci64
spm_en.m
spm_smoothkern.m
spm_dilate.m
spm_mvNpdf.m
spm_mip.m
spm_P_peakFDR.m
spm_gx_state_fmri.m
spm_krutil.m
spm_conman.m
spm_Gpdf.m
spm_DEM_set.m
spm_eeg_displayECD.m
spm_lotka_volterra.m
spm_fMRI_design.m
spm_graph.m
spm_preproc_write8.m
spm_eeg_artefact_eyeblink.m
spm_eeg_reduce_pca_adapt.m
spm_bms_anova.m
spm_eeg_inv_extract.m
spm_conv_vol.mexa64
spm_check_results.m
spm_mrf.mexmaci64
spm_eeg_load.m
spm_sections.m
spm_mesh_inflate.m
spm_Welcome.m
spm_eeg_artefact_zscorediff.m
spm_compare_families.m
spm_dilate_erode.mexw32
spm_sptop.m
spm_ancova.m
spm_imcalc.m
spm_print.m
spm_spm_vb.m
spm_dilate_erode.mexa64
spm_invFcdf.m
spm_eeg_select_event_ui.m
spm_eeg_invert_display.m
spm_dcm_peb_rnd.m
spm_eeg_inv_rigidreg.m
spm_krutil.mexw32
spm_cva_ui.m
spm_eeg_review.m
spm_u.m
spm_vec.m
spm_sde_dx.m
spm_read_vols.m
spm_normrnd.m
spm_hist2.mexa64
spm_DEM_qP.m
spm_eeg_review_buttons.mat
spm_vb_spatial_precision.m
spm_hist2.mexw32
spm_affine_priors.m
AUTHORS.txt
spm_sqrtm.m
spm_fx_hdm.m
spm_diff_dx.m
spm_orth.m
spm_phi.m
spm_reml_sc.m
spm_mnc2nifti.m
spm_global.mexw32
spm_provenance.m
spm_regions.m
spm_dwtmtx.m
spm_eeg_invert_classic_mix.m
spm_int_B.m
spm_data_id.m
spm_dcm_fmri_graph_gen.m
spm_BMS_F.m
spm_cva.m
spm_eeg_specest_hilbert.m
spm_add.mexmaci64
spm_cat.mexw32
spm_parrec2nifti.m
spm_eeg_remove_bad_trials.m
spm_file_split.m
spm_mask.m
@file_array
reshape.m
initialise.m
subsref.m
file_array.m
double.m
transpose.m
isnan.m
loadobj.m
ctranspose.m
length.m
Contents.m
private
init.mexw64
file2mat.c
mat2file.mexa64
file2mat.m
dtype.m
mat2file.m
Makefile
datatypes.m
mat2file.mexw64
scl_inter.m
mat2file.mexw32
init.mexa64
file2mat.mexmaci64
init.c
file2mat.mexw64
file2mat.mexw32
file2mat.mexa64
permission.m
init.mexmaci64
init.mexw32
init.m
mat2file.mexmaci64
mystruct.m
dim.m
fname.m
resize_scales.m
scl_slope.m
mat2file.c
offset.m
subsasgn.m
end.m
horzcat.m
cat.m
display.m
numeric.m
disp.m
fieldnames.m
numel.m
permute.m
size.m
ndims.m
vertcat.m
spm_vb_roi_anova.m
spm_eeg_combineplanar.m
spm_dot.m
spm_eeg_grandmean.m
spm_get_bf.m
spm_Q_perm.m
gmsh
Info.plist
gui_icon.bmp
templates
MNI152_T1_2mm_head_dil.nii.gz
CC_filterkernel.nii.gz
gui_icon.ico
gui_icon.gif
ElectrodeCaps_MNI
EEG10-20_extended_SPM12.geo
EEG10-20_extended_SPM12.csv
EEG10-10_Cutini_2011.csv
EEG10-10_UI_Jurak_2007.csv
Fiducials.csv
EEG10-10_Neuroelectrics.geo
EEG10-10_Cutini_2011.geo
Fiducials.geo
EEG10-10_Neuroelectrics.csv
EEG10-20_Okamoto_2004.geo
Simnibs2.1_TDCScaps_description.odt
EEG10-10_UI_Jurak_2007.geo
EEG10-20_Okamoto_2004.csv
include
osx
petsc
petscts.h
HYPRE_seq_mv.h
petscmatcoarsen.h
HYPRE_MatvecFunctions.h
petscpctypes.h
petscblaslapack_mangle.h
petscdmnetwork.h
_hypre_struct_ls.h
petscdmadaptor.h
lobpcg.h
petscfvtypes.h
petscsnes.h
petsccuda.h
petscctable.h
petscdmplex.h
petscdrawtypes.h
petsctao.h
HYPREf.h
temp_multivector.h
krylov.h
petscbag.h
fortran.h
petscistypes.h
petsc.h
petscfetypes.h
HYPRE_sstruct_ls.h
petscksp.h
csr_matmultivec.h
petscwebclient.h
petscis.h
petscviewerhdf5.h
HYPRE.h
HYPRE_parcsr_mv.h
_hypre_IJ_mv.h
petscmatlab.h
par_multivector.h
HYPRE_struct_mv.h
par_csr_pmvcomm.h
petscdmlabel.h
_hypre_parcsr_ls.h
petscfix.h
petscviewer.h
par_csr_matmultivec.h
mpio.h
petsclog.h
petscviewertypes.h
petscmathypre.h
petscdmtypes.h
mpiof.h
HYPRE_IJ_mv.h
petscconvest.h
petscdstypes.h
HYPRE_config.h
petscmatelemental.h
petscblaslapack.h
petscmat.h
petsctaolinesearch.h
petscpc.h
HYPRE_error_f.h
seq_mv.h
petscdmpatch.h
petscmachineinfo.h
petscoptions.h
interpreter.h
_hypre_parcsr_mv.h
petsccharacteristic.h
petscerror.h
_hypre_sstruct_ls.h
HYPRE_parcsr_ls.h
petscdm.h
petscgll.h
HYPRE_lobpcg.h
petscdmdatypes.h
petscds.h
petscfv.h
petscdmswarm.h
petscmath.h
_hypre_struct_mv.h
fortran_matrix.h
petscbt.h
petscao.h
HYPRE_DistributedMatrixPilutSolver_types.h
petscdmshell.h
HYPRE_struct_ls.h
petscvec.h
petsctime.h
petscfe.h
mpi.h
multivector.h
hypre_hopscotch_hash.h
distributed_matrix.h
petscversion.h
petscviennacl.h
mpicxx.h
petscdmda.h
petscdmcomposite.h
petscdt.h
HYPRE_sstruct_mv.h
HYPRE_matrix_matrix_protos.h
petscdmforest.h
petscdmmoab.h
_hypre_sstruct_mv.h
petscblaslapack_stdcall.h
petscdraw.h
par_csr_block_matrix.h
petscsftypes.h
petscsf.h
petscconf.h
petscdmsliced.h
petscvalgrind.h
petscdmredundant.h
HYPRE_DistributedMatrixPilutSolver_protos.h
HYPRE_krylov.h
petscconfiginfo.h
HYPRE_utilities.h
seq_multivector.h
petscviewersaws.h
csr_block_matrix.h
_hypre_utilities.h
petscsys.h
petscpf.h
linux
petsc
petscts.h
HYPRE_seq_mv.h
petscmatcoarsen.h
HYPRE_MatvecFunctions.h
petscpctypes.h
petscblaslapack_mangle.h
petscdmnetwork.h
_hypre_struct_ls.h
petscdmadaptor.h
lobpcg.h
petscfvtypes.h
petscsnes.h
petsccuda.h
petscctable.h
petscdmplex.h
petscdrawtypes.h
petsctao.h
HYPREf.h
temp_multivector.h
krylov.h
petscbag.h
fortran.h
petscistypes.h
petsc.h
petscfetypes.h
HYPRE_sstruct_ls.h
petscksp.h
csr_matmultivec.h
petscwebclient.h
petscis.h
petscviewerhdf5.h
HYPRE.h
HYPRE_parcsr_mv.h
_hypre_IJ_mv.h
petscmatlab.h
par_multivector.h
HYPRE_struct_mv.h
par_csr_pmvcomm.h
petscdmlabel.h
_hypre_parcsr_ls.h
petscfix.h
petscviewer.h
par_csr_matmultivec.h
mpio.h
petsclog.h
petscviewertypes.h
petscmathypre.h
petscdmtypes.h
mpiof.h
HYPRE_IJ_mv.h
petscconvest.h
petscdstypes.h
HYPRE_config.h
petscmatelemental.h
petscblaslapack.h
petscmat.h
petsctaolinesearch.h
petscpc.h
HYPRE_error_f.h
seq_mv.h
petscdmpatch.h
petscmachineinfo.h
petscoptions.h
interpreter.h
_hypre_parcsr_mv.h
petsccharacteristic.h
petscerror.h
_hypre_sstruct_ls.h
HYPRE_parcsr_ls.h
petscdm.h
petscgll.h
HYPRE_lobpcg.h
petscdmdatypes.h
petscds.h
petscfv.h
petscdmswarm.h
petscmath.h
_hypre_struct_mv.h
fortran_matrix.h
petscbt.h
petscao.h
HYPRE_DistributedMatrixPilutSolver_types.h
petscdmshell.h
HYPRE_struct_ls.h
petscvec.h
petsctime.h
petscfe.h
mpi.h
multivector.h
hypre_hopscotch_hash.h
distributed_matrix.h
petscversion.h
petscviennacl.h
mpicxx.h
petscdmda.h
petscdmcomposite.h
petscdt.h
HYPRE_sstruct_mv.h
HYPRE_matrix_matrix_protos.h
petscdmforest.h
petscdmmoab.h
_hypre_sstruct_mv.h
petscblaslapack_stdcall.h
petscdraw.h
par_csr_block_matrix.h
petscsftypes.h
petscsf.h
petscconf.h
petscdmsliced.h
petscvalgrind.h
petscdmredundant.h
HYPRE_DistributedMatrixPilutSolver_protos.h
HYPRE_krylov.h
petscconfiginfo.h
HYPRE_utilities.h
seq_multivector.h
petscviewersaws.h
csr_block_matrix.h
_hypre_utilities.h
petscsys.h
petscpf.h
win
petsc
petscts.h
petscmatcoarsen.h
petscpctypes.h
petscblaslapack_mangle.h
petscdmnetwork.h
petsc
mpiuni
mpif.h
mpiunifdef.h
mpi.h
private
dmdaimpl.h
viewerimpl.h
dmpleximpl.h
snesimpl.h
dmadaptorimpl.h
fortranimpl.h
matimpl.h
kernels
blocktranspose.h
petscaxpy.h
blockinvert.h
blockmatmult.h
tsimpl.h
dmforestimpl.h
pcgamgimpl.h
petscfvimpl.h
petscfptimpl.h
taoimpl.h
taolinesearchimpl.h
dmlabelimpl.h
dmswarmimpl.h
dtimpl.h
dmimpl.h
pcimpl.h
glvisvecimpl.h
makefile
sfimpl.h
hash.h
petscfeimpl.h
petscimpl.h
dmnetworkimpl.h
isimpl.h
vecimpl.h
petscconvestimpl.h
logimpl.h
f90impl.h
dmpatchimpl.h
linesearchimpl.h
bagimpl.h
matorderimpl.h
characteristicimpl.h
drawimpl.h
pcmgimpl.h
dmmbimpl.h
kspimpl.h
glvisviewerimpl.h
petscdsimpl.h
finclude
petscts.h
petscdmnetwork.h
petscsnes.h
petscdmplex.h
petsctao.h
petscbag.h
petsc.h
petscksp.h
petscis.h
petscdmlabel.h
petscviewer.h
petsclog.h
petscmat.h
petscpc.h
petscsnesfas.h
petscerror.h
petscdm.h
makefile
petscao.h
petscvec.h
petscdmda.h
petscdraw.h
petscsys.h
petscdmadaptor.h
petscfvtypes.h
petscsnes.h
petsccuda.h
petscctable.h
petscdmplex.h
petscdrawtypes.h
petsctao.h
petscbag.h
petscistypes.h
petsc.h
petscfetypes.h
petscksp.h
petscwebclient.h
petscis.h
petscviewerhdf5.h
petscmatlab.h
petscdmlabel.h
petscfix.h
petscviewer.h
petsclog.h
petscviewertypes.h
petscmathypre.h
petscdmtypes.h
petscconvest.h
petscdstypes.h
petscmatelemental.h
petscblaslapack.h
petscmat.h
petsctaolinesearch.h
petscpc.h
petscdmpatch.h
petscmachineinfo.h
petscoptions.h
petsccharacteristic.h
petscerror.h
petscdm.h
petscgll.h
petscdmdatypes.h
petscds.h
petscfv.h
petscdmswarm.h
petscmath.h
petscbt.h
petscao.h
petscdmshell.h
petscvec.h
petsctime.h
petscfe.h
petscversion.h
petscviennacl.h
petscdmda.h
petscdmcomposite.h
petscdt.h
petscdmforest.h
petscdmmoab.h
petscblaslapack_stdcall.h
petscdraw.h
petscsftypes.h
petscsf.h
petscconf.h
petscdmsliced.h
petscvalgrind.h
petscdmredundant.h
petscconfiginfo.h
petscviewersaws.h
petscsys.h
petscpf.h
mpi
mspms.h
mpif.h
mpio.h
x86
mpifptr.h
pmidbg.h
mpi.h
x64
mpifptr.h
mpi.f90
hypre
HYPRE_seq_mv.h
HYPRE_MatvecFunctions.h
_hypre_struct_ls.h
lobpcg.h
HYPREf.h
temp_multivector.h
krylov.h
fortran.h
HYPRE_sstruct_ls.h
csr_matmultivec.h
HYPRE.h
HYPRE_parcsr_mv.h
_hypre_IJ_mv.h
par_multivector.h
HYPRE_struct_mv.h
par_csr_pmvcomm.h
_hypre_parcsr_ls.h
par_csr_matmultivec.h
HYPRE_IJ_mv.h
HYPRE_config.h
HYPRE_error_f.h
seq_mv.h
interpreter.h
_hypre_parcsr_mv.h
_hypre_sstruct_ls.h
HYPRE_parcsr_ls.h
HYPRE_lobpcg.h
_hypre_struct_mv.h
fortran_matrix.h
HYPRE_DistributedMatrixPilutSolver_types.h
HYPRE_struct_ls.h
multivector.h
hypre_hopscotch_hash.h
distributed_matrix.h
HYPRE_sstruct_mv.h
HYPRE_matrix_matrix_protos.h
_hypre_sstruct_mv.h
par_csr_block_matrix.h
HYPRE_DistributedMatrixPilutSolver_protos.h
HYPRE_krylov.h
HYPRE_utilities.h
seq_multivector.h
csr_block_matrix.h
_hypre_utilities.h
cython_code
petsc_solver.pyx
cython_msh.pyx
_marching_cubes_lewiner_cy.pyx
__init__.py
_solver.c
optimization
optimization_methods.py
optimize_tms.py
opt_struct.py
__init__.py
matlab
parse_input.m
mesh_extract_regions.m
subject2mni_coords.m
mesh_save_hdf5.m
mesh_get_tetrahedron_sizes.m
simnibs_cli_call.m
mesh_get_simulation_result.m
get_field_idx.m
get_fields_at_coordinates.m
mesh_get_histogram.m
mesh_get_triangle_centers.m
get_data_and_scaleLimits.m
mesh_load_fssurf.m
mesh_empty.m
mesh_load_fsresults.m
mesh_show_surface.m
opt_struct.m
mesh_load_data_matrix_entry.m
mesh_load_gmsh4.m
standard_cond.m
mesh_get_surf_extrema_and_percentiles.m
mesh_get_fieldpeaks_and_focality.m
nifti_load.m
mesh_get_tetrahedron_centers.m
mesh_load_hdf5.m
run_simnibs.m
mesh_get_node_areas.m
sim_struct.m
nifti_save.m
mesh_load_fsannot.m
subject_atlas.m
mesh_get_triangle_sizes.m
mni2subject_coords.m
mesh_save_gmsh4.m
examples
optimization
tdcs_optimize_multi_target.py
leadfield.m
tdcs_optimize_avoid.py
tdcs_optimize_intensity.py
tdcs_optimize_multi_target.m
leadfield.py
tdcs_optimize_mni.py
tms_optimization.py
tms_opt_refined.m
tdcs_optimize_mni.m
tdcs_optimize.py
tdcs_optimize.m
tdcs_optimize_avoid.m
tdcs_optimize_intensity.m
tms_optimization.m
tms_opt_refined.py
simulations
run_simulations_group.py
tDCS.py
TMS.py
TMS_MNI.py
run_simulations_group.m
tDCS_ring.m
TMS.m
tDCS_ring.py
tDCS_advanced.m
tDCS.m
TMS_MNI.m
analysis
transform_coordinates.m
roi_analysis_surf.py
example_get_data_from_fs_files.m
roi_analysis_mni.m
group_average_fsavg.m
roi_analysis_surf.m
roi_analysis_mni.py
group_average_mni.py
group_average_fsavg.py
example_get_data_from_msh.m
group_average_mni.m
transform_coordinates.py
uncertainty_quantification
uncertainty_quantification.py
uncertainty_quantification.m
uq_secondary_quantities.py
uq_setup_advanced.py
GUI
nifti_viewer.py
head_model_OGL.py
electrodeGUI.py
simulation_menu.py
__init__.py
main_gui.py
ccd-files
MagVenture_MC_B70.ccd
cli
run_simnibs.py
maskmesh.py
merge_labels_WM.py
postinstall_simnibs.py
subject_atlas.py
gmsh.py
mni2subject.py
subject2mni.py
mri2mesh.py
msh2cortex.py
dwi2cond.py
get_eeg_positions.py
headreco.py
nii2msh.py
mni2subject_coords.py
get_fields_at_coordinates.py
subject2mni_coords.py
simnibs_gui.py
postinstall_simnibs.py.orig
__init__.py
check_meshed_volumes.py
eeg_positions.py
meshfix.py
msh2nii.py
simulation
fem.py
run_simnibs.py
cond.py
analytical_solutions
sphere.py
__init__.py
electrode_placement.py
gpc.py
__init__.py
sim_struct.py
pardiso.py
coil_numpy.py
lib
osx
libmpi.dylib
libpmpi.dylib
libpetsc.3.9.dylib
libpetsc.dylib
linux
libpetsc.so
win
pygpc
misc.py
ni.py
adaptive.py
grid.py
testfuncs
lim_2002.py
oakley_ohagan_2004_a1.txt
wing_weight.py
peaks.py
g_function.py
oakley_ohagan_2004_a2.txt
ishigami.py
sphere.py
__init__.py
sphere_fun.py
oakley_ohagan_2004_a3.txt
oakley_ohagan_2004.py
welch_1992.py
oakley_ohagan_2004_M.txt
testfunctions.py
sphere0_fun.py
__init__.py
__init__.py
tests
testing_files
iso_eeg.pro
session.mat
aniso_tms.pro
iso_tdcs.pro
iso_tms.pro
utils
test_file_finder.py
optimization
test_opt_struct.py
test_optimize_tms.py
test_optimization_methods.py
matlab
test_gmsh_io.m
anydifferences.m
examples
examples.py
octave_compatibility
repelem.m
mesh_show_surface.m
integration
test_simnibsrun_simstruct.mat
simnibsrun_prep_simstruct.py
test_simnibsrun_positions.csv
test_simnibsrun.sh
simulation
analytical_solutions
test_sphere.py
test_fem.py
test_coil.py
test_electrode_placement.py
test_pardiso.py
test_cond.py
test_gpc.py
test_sim_struct.py
pygpc
test_adaptive.py
msh
test_mesh_io.py
test_surface.py
test_transformations.py
_version.py
bin
osx
getopt
libintl.8.dylib
linux
expr
getopt
win
bash_modules
dwi2cond.check.source.sh
d2c_check.opt
mri2mesh.brain.source.sh
mri2mesh.subcortical.source.sh
mri2mesh.mni.source.sh
mri2mesh.volumemesh.source.sh
dwi2cond
mri2mesh.head.source.sh
dwi2cond.prepro.source.sh
dwi2cond.t1reg.source.sh
dwi2cond.functions.source.sh
mri2mesh.check.source.sh
mri2mesh
b02b0_nosubsamp.cnf
msh
gmsh_view.py
segment_SPM.m
_marching_cubes_lewiner_luts.py
mesh_io.py
headreco.py
transformations.py
surface.py
__init__.py
segment_CAT.m
eeg_positions.py
hmutils.py
.gitignore
pack.py
docs
Makefile
make.bat
faq.rst
build
doctrees
dataset.doctree
publications.doctree
faq.doctree
tutorial
head_meshing.doctree
visualization.doctree
win
