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Project: pySINDy (GitHub Link)
  • pySINDy-master
    • tags
    • linting.py
    • datasets
      • reaction_diffusion.m
      • reaction_diffusion_rhs.m
    • examples
      • example-4-isindy-subtilis_competence.ipynb
      • example-3-sindypde-reactiondiffusion.ipynb
      • example-1-sindy-vanderpol.ipynb
      • .ipynb_checkpoints
        • example-2-sindypde-checkpoint.ipynb
        • example-3-sindypde-reactiondiffusion-checkpoint.ipynb
        • example-1-sindy-checkpoint.ipynb
        • example-2-sindypde-burgers-checkpoint.ipynb
        • Untitled-checkpoint.ipynb
        • example-4-isindy-subtilis_competence-checkpoint.ipynb
        • example-4-isindy-yeastglycolysisNM-checkpoint.ipynb
        • example-1-sindy-vanderpol-checkpoint.ipynb
      • example-2-sindypde-burgers.ipynb
    • LICENSE
    • pySINDy
      • utils
        • __pycache__
          • generator.cpython-36.pyc
        • generator.py
      • sindypde.py
      • dsindy.py
      • sindybase.py
      • version.py
      • __init__.py
      • tests
        • test_sindybase.py
        • __pycache__
          • test_sindybase.cpython-36-PYTEST.pyc
          • __init__.cpython-36.pyc
          • test_sindy.cpython-36-PYTEST.pyc
          • test_sindypde.cpython-36.pyc
          • test_sindybase.cpython-36.pyc
          • test_sindypde.cpython-36-PYTEST.pyc
          • test_sindy.cpython-36.pyc
        • test_isindy.py
        • __init__.py
        • test_sindypde.py
        • test_sindy.py
      • sindy.py
      • isindy.py
    • setup.py
    • .travis.yml
    • README.md
    • requirements.txt
    • .gitignore
    • docs
      • Makefile
      • source
        • sindypde.rst
        • code.rst
        • _summaries
          • pySINDy.sindypde.SINDyPDE.compute_spatial_derivatives.rst
          • pySINDy.sindybase.SINDyBase.threshold_ls.rst
          • pySINDy.sindybase.SINDyBase.exponent_to_description.rst
          • pySINDy.isindy.ISINDy.adm.rst
          • pySINDy.sindypde.SINDyPDE.product_expansion.rst
          • pySINDy.sindybase.SINDyBase.sparsify_dynamics.rst
          • pySINDy.isindy.ISINDy.expand_descriptions.rst
          • pySINDy.isindy.ISINDy.nullify.rst
          • pySINDy.sindybase.SINDyBase.finite_difference.rst
          • pySINDy.sindybase.SINDyBase.pointwise_polynomial_difference.rst
          • pySINDy.isindy.ISINDy.fit.rst
          • pySINDy.sindybase.SINDyBase.polynomial_difference.rst
          • pySINDy.sindybase.SINDyBase.polynomial_expansion.rst
          • pySINDy.sindypde.SINDyPDE.sampling_idxs.rst
          • pySINDy.sindybase.SINDyBase.get_ordered_poly_exponents.rst
          • pySINDy.sindy.SINDy.fit.rst
          • pySINDy.sindypde.SINDyPDE.dict_to_2darray.rst
          • pySINDy.sindybase.SINDyBase.fit.rst
          • pySINDy.isindy.ISINDy.build_theta_matrix.rst
          • pySINDy.sindybase.SINDyBase.get_poly_exponents.rst
          • pySINDy.sindypde.SINDyPDE.fit.rst
          • pySINDy.sindypde.SINDyPDE.orders_to_op.rst
        • LICENSE.rst
        • index.rst
        • conf.py
        • contact.rst
        • sindy.rst
        • isindy.rst
        • _static
        • contributing.rst
        • sindybase.rst
      • make.bat
      • build
        • doctrees
          • contributing.doctree
          • environment.pickle
          • sindy.doctree
          • contact.doctree
          • _summaries
            • pySINDy.sindybase.SINDyBase.get_poly_exponents.doctree
            • pySINDy.sindybase.SINDyBase.threshold_ls.doctree
            • pySINDy.sindybase.SINDyBase.sparsify_dynamics.doctree
            • pySINDy.sindy.SINDy.fit.doctree
            • pySINDy.sindypde.SINDyPDE.dict_to_2darray.doctree
            • pySINDy.sindybase.SINDyBase.finite_difference.doctree
            • pySINDy.sindybase.SINDyBase.polynomial_expansion.doctree
            • pySINDy.isindy.ISINDy.adm.doctree
            • pySINDy.isindy.ISINDy.expand_descriptions.doctree
            • pySINDy.isindy.ISINDy.build_theta_matrix.doctree
            • pySINDy.sindybase.SINDyBase.pointwise_polynomial_difference.doctree
            • pySINDy.isindy.ISINDy.fit.doctree
            • pySINDy.sindybase.SINDyBase.polynomial_difference.doctree
            • pySINDy.sindybase.SINDyBase.exponent_to_description.doctree
            • pySINDy.sindypde.SINDyPDE.orders_to_op.doctree
            • pySINDy.isindy.ISINDy.nullify.doctree
            • pySINDy.sindypde.SINDyPDE.sampling_idxs.doctree
            • pySINDy.sindybase.SINDyBase.get_ordered_poly_exponents.doctree
            • pySINDy.sindypde.SINDyPDE.compute_spatial_derivatives.doctree
            • pySINDy.sindypde.SINDyPDE.fit.doctree
            • pySINDy.sindypde.SINDyPDE.product_expansion.doctree
            • pySINDy.sindybase.SINDyBase.fit.doctree
          • sindyPDE.doctree
          • code.doctree
          • sindybase.doctree
          • isindy.doctree
          • LICENSE.doctree
          • index.doctree
        • html
          • _sources
            • index.rst.txt
            • contributing.txt
            • index.txt
            • sindybase.txt
            • sindy.txt
            • _summaries
              • pySINDy.sindybase.SINDyBase.exponent_to_description.txt
              • pySINDy.sindypde.SINDyPDE.sampling_idxs.txt
              • pySINDy.sindybase.SINDyBase.get_poly_exponents.txt
              • pySINDy.isindy.ISINDy.expand_descriptions.txt
              • pySINDy.sindybase.SINDyBase.sparsify_dynamics.txt
              • pySINDy.sindybase.SINDyBase.fit.txt
              • pySINDy.sindypde.SINDyPDE.dict_to_2darray.txt
              • pySINDy.isindy.ISINDy.fit.txt
              • pySINDy.sindybase.SINDyBase.polynomial_expansion.txt
              • pySINDy.sindy.SINDy.fit.txt
              • pySINDy.isindy.ISINDy.build_theta_matrix.txt
              • pySINDy.sindybase.SINDyBase.threshold_ls.txt
              • pySINDy.sindybase.SINDyBase.get_ordered_poly_exponents.txt
              • pySINDy.sindypde.SINDyPDE.compute_spatial_derivatives.txt
              • pySINDy.sindypde.SINDyPDE.fit.txt
              • pySINDy.sindybase.SINDyBase.pointwise_polynomial_difference.txt
              • pySINDy.sindybase.SINDyBase.finite_difference.txt
              • pySINDy.isindy.ISINDy.nullify.txt
              • pySINDy.sindypde.SINDyPDE.product_expansion.txt
              • pySINDy.sindypde.SINDyPDE.orders_to_op.txt
              • pySINDy.sindybase.SINDyBase.polynomial_difference.txt
              • pySINDy.isindy.ISINDy.adm.txt
            • contact.txt
            • code.txt
            • isindy.txt
            • LICENSE.txt
            • sindyPDE.txt
          • searchindex.js
          • _images
          • _summaries
            • pySINDy.isindy.ISINDy.expand_descriptions.html
            • pySINDy.sindybase.SINDyBase.polynomial_difference.html
            • pySINDy.sindybase.SINDyBase.finite_difference.html
            • pySINDy.sindybase.SINDyBase.get_ordered_poly_exponents.html
            • pySINDy.sindybase.SINDyBase.polynomial_expansion.html
            • pySINDy.sindybase.SINDyBase.pointwise_polynomial_difference.html
            • pySINDy.sindy.SINDy.fit.html
            • pySINDy.sindypde.SINDyPDE.sampling_idxs.html
            • pySINDy.sindybase.SINDyBase.sparsify_dynamics.html
            • pySINDy.sindypde.SINDyPDE.orders_to_op.html
            • pySINDy.sindybase.SINDyBase.threshold_ls.html
            • pySINDy.isindy.ISINDy.build_theta_matrix.html
            • pySINDy.sindypde.SINDyPDE.compute_spatial_derivatives.html
            • pySINDy.sindypde.SINDyPDE.fit.html
            • pySINDy.sindybase.SINDyBase.get_poly_exponents.html
            • pySINDy.isindy.ISINDy.fit.html
            • pySINDy.sindypde.SINDyPDE.dict_to_2darray.html
            • pySINDy.sindypde.SINDyPDE.product_expansion.html
            • pySINDy.sindybase.SINDyBase.fit.html
            • pySINDy.isindy.ISINDy.adm.html
            • pySINDy.sindybase.SINDyBase.exponent_to_description.html
            • pySINDy.isindy.ISINDy.nullify.html
          • .buildinfo
          • objects.inv
          • genindex.html
          • contact.html
          • LICENSE.html
          • sindyPDE.html
          • py-modindex.html
          • index.html
          • search.html
          • sindy.html
          • _static
            • ajax-loader.gif
            • jquery.js
            • sidebar.js
            • basic.css
            • pygments.css
            • searchtools.js
            • documentation_options.js
            • sphinxdoc.css
            • doctools.js
            • websupport.js
            • underscore-1.3.1.js
            • alabaster.css
            • underscore.js
            • custom.css
            • classic.css
          • code.html
          • isindy.html
          • contributing.html
          • sindybase.html
    • env
      • include
        • python3.6m
      • lib
        • python3.6
          • bisect.py
          • ntpath.py
          • encodings
          • _dummy_thread.py
          • __future__.py
          • imp.py
          • base64.py
          • site.py
          • distutils
            • __pycache__
              • __init__.cpython-36.pyc
            • distutils.cfg
            • __init__.py
          • copy.py
          • config-3.6m-darwin
          • __pycache__
            • copyreg.cpython-36.pyc
            • struct.cpython-36.pyc
            • copy.cpython-36.pyc
            • locale.cpython-36.pyc
            • tokenize.cpython-36.pyc
            • io.cpython-36.pyc
            • hmac.cpython-36.pyc
            • sre_compile.cpython-36.pyc
            • tempfile.cpython-36.pyc
            • re.cpython-36.pyc
            • _bootlocale.cpython-36.pyc
            • reprlib.cpython-36.pyc
            • fnmatch.cpython-36.pyc
            • types.cpython-36.pyc
            • warnings.cpython-36.pyc
            • linecache.cpython-36.pyc
            • random.cpython-36.pyc
            • functools.cpython-36.pyc
            • imp.cpython-36.pyc
            • enum.cpython-36.pyc
            • sre_parse.cpython-36.pyc
            • _weakrefset.cpython-36.pyc
            • heapq.cpython-36.pyc
            • abc.cpython-36.pyc
            • genericpath.cpython-36.pyc
            • shutil.cpython-36.pyc
            • bisect.cpython-36.pyc
            • tarfile.cpython-36.pyc
            • _collections_abc.cpython-36.pyc
            • stat.cpython-36.pyc
            • os.cpython-36.pyc
            • ntpath.cpython-36.pyc
            • codecs.cpython-36.pyc
            • __future__.cpython-36.pyc
            • base64.cpython-36.pyc
            • posixpath.cpython-36.pyc
            • token.cpython-36.pyc
            • keyword.cpython-36.pyc
            • site.cpython-36.pyc
            • operator.cpython-36.pyc
            • sre_constants.cpython-36.pyc
            • weakref.cpython-36.pyc
            • hashlib.cpython-36.pyc
          • reprlib.py
          • tarfile.py
          • no-global-site-packages.txt
          • sre_compile.py
          • codecs.py
          • rlcompleter.py
          • locale.py
          • linecache.py
          • genericpath.py
          • random.py
          • os.py
          • re.py
          • sre_parse.py
          • shutil.py
          • weakref.py
          • copyreg.py
          • tokenize.py
          • _collections_abc.py
          • operator.py
          • io.py
          • stat.py
          • collections
          • _weakrefset.py
          • lib-dynload
          • warnings.py
          • hmac.py
          • abc.py
          • orig-prefix.txt
          • sre_constants.py
          • fnmatch.py
          • readline.so
          • functools.py
          • types.py
          • keyword.py
          • hashlib.py
          • tempfile.py
          • importlib
          • _bootlocale.py
          • struct.py
          • posixpath.py
          • token.py
          • site-packages
            • chardet
              • euctwfreq.py
              • gb2312freq.py
              • charsetgroupprober.py
              • sbcharsetprober.py
              • langhebrewmodel.py
              • __pycache__
                • langthaimodel.cpython-36.pyc
                • jpcntx.cpython-36.pyc
                • codingstatemachine.cpython-36.pyc
                • gb2312freq.cpython-36.pyc
                • euckrfreq.cpython-36.pyc
                • langbulgarianmodel.cpython-36.pyc
                • langhungarianmodel.cpython-36.pyc
                • big5prober.cpython-36.pyc
                • langhebrewmodel.cpython-36.pyc
                • mbcssm.cpython-36.pyc
                • mbcharsetprober.cpython-36.pyc
                • sbcsgroupprober.cpython-36.pyc
                • escsm.cpython-36.pyc
                • latin1prober.cpython-36.pyc
                • gb2312prober.cpython-36.pyc
                • cp949prober.cpython-36.pyc
                • __init__.cpython-36.pyc
                • sjisprober.cpython-36.pyc
                • langgreekmodel.cpython-36.pyc
                • euckrprober.cpython-36.pyc
                • version.cpython-36.pyc
                • charsetgroupprober.cpython-36.pyc
                • universaldetector.cpython-36.pyc
                • chardistribution.cpython-36.pyc
                • enums.cpython-36.pyc
                • charsetprober.cpython-36.pyc
                • mbcsgroupprober.cpython-36.pyc
                • euctwfreq.cpython-36.pyc
                • euctwprober.cpython-36.pyc
                • escprober.cpython-36.pyc
                • hebrewprober.cpython-36.pyc
                • sbcharsetprober.cpython-36.pyc
                • langcyrillicmodel.cpython-36.pyc
                • utf8prober.cpython-36.pyc
                • langturkishmodel.cpython-36.pyc
                • big5freq.cpython-36.pyc
                • compat.cpython-36.pyc
                • jisfreq.cpython-36.pyc
                • eucjpprober.cpython-36.pyc
              • codingstatemachine.py
              • big5prober.py
              • langhungarianmodel.py
              • mbcharsetprober.py
              • langgreekmodel.py
              • version.py
              • cli
                • chardetect.py
                • __pycache__
                  • chardetect.cpython-36.pyc
                  • __init__.cpython-36.pyc
                • __init__.py
              • charsetprober.py
              • euctwprober.py
              • eucjpprober.py
              • mbcsgroupprober.py
              • escprober.py
              • langbulgarianmodel.py
              • utf8prober.py
              • euckrfreq.py
              • universaldetector.py
              • mbcssm.py
              • sbcsgroupprober.py
              • hebrewprober.py
              • sjisprober.py
              • langthaimodel.py
              • cp949prober.py
              • latin1prober.py
              • chardistribution.py
              • __init__.py
              • gb2312prober.py
              • escsm.py
              • big5freq.py
              • compat.py
              • euckrprober.py
              • enums.py
              • langcyrillicmodel.py
              • langturkishmodel.py
              • jisfreq.py
              • jpcntx.py
            • jupyter_client-5.2.3.dist-info
              • METADATA
              • top_level.txt
              • metadata.json
              • WHEEL
              • INSTALLER
              • DESCRIPTION.rst
              • entry_points.txt
              • RECORD
            • python_dateutil-2.7.5.dist-info
              • METADATA
              • top_level.txt
              • WHEEL
              • zip-safe
              • INSTALLER
              • RECORD
              • LICENSE.txt
            • pkg_resources
              • _vendor
                • appdirs.py
                • __pycache__
                  • __init__.cpython-36.pyc
                  • pyparsing.cpython-36.pyc
                  • six.cpython-36.pyc
                  • appdirs.cpython-36.pyc
                • six.py
                • __init__.py
                • packaging
                  • __about__.py
                  • markers.py
                  • __pycache__
                    • _compat.cpython-36.pyc
                    • markers.cpython-36.pyc
                    • specifiers.cpython-36.pyc
                    • __init__.cpython-36.pyc
                    • version.cpython-36.pyc
                    • utils.cpython-36.pyc
                    • _structures.cpython-36.pyc
                    • requirements.cpython-36.pyc
                    • __about__.cpython-36.pyc
                  • specifiers.py
                  • version.py
                  • requirements.py
                  • _compat.py
                  • __init__.py
                  • utils.py
                  • _structures.py
              • __pycache__
                • __init__.cpython-36.pyc
                • py31compat.cpython-36.pyc
              • py31compat.py
              • __init__.py
              • extern
                • __pycache__
                  • __init__.cpython-36.pyc
                • __init__.py
            • typed_ast
              • ast27.py
              • __pycache__
                • conversions.cpython-36.pyc
                • __init__.cpython-36.pyc
                • ast27.cpython-36.pyc
                • ast3.cpython-36.pyc
              • ast3.py
              • __init__.py
              • conversions.py
            • coverage-4.5.2.dist-info
              • METADATA
              • top_level.txt
              • metadata.json
              • WHEEL
              • INSTALLER
              • DESCRIPTION.rst
              • entry_points.txt
              • RECORD
              • LICENSE.txt
            • _pytest
              • stepwise.py
              • junitxml.py
              • pathlib.py
              • capture.py
              • skipping.py
              • hookspec.py
              • doctest.py
              • tmpdir.py
              • __pycache__
                • fixtures.cpython-36.pyc
                • nodes.cpython-36.pyc
                • nose.cpython-36.pyc
                • skipping.cpython-36.pyc
                • cacheprovider.cpython-36.pyc
                • freeze_support.cpython-36.pyc
                • pytester.cpython-36.pyc
                • debugging.cpython-36.pyc
                • outcomes.cpython-36.pyc
                • recwarn.cpython-36.pyc
                • helpconfig.cpython-36.pyc
                • tmpdir.cpython-36.pyc
                • setuponly.cpython-36.pyc
                • main.cpython-36.pyc
                • junitxml.cpython-36.pyc
                • warning_types.cpython-36.pyc
                • setupplan.cpython-36.pyc
                • __init__.cpython-36.pyc
                • python.cpython-36.pyc
                • warnings.cpython-36.pyc
                • python_api.cpython-36.pyc
                • deprecated.cpython-36.pyc
                • unittest.cpython-36.pyc
                • monkeypatch.cpython-36.pyc
                • pastebin.cpython-36.pyc
                • _argcomplete.cpython-36.pyc
                • runner.cpython-36.pyc
                • pathlib.cpython-36.pyc
                • resultlog.cpython-36.pyc
                • stepwise.cpython-36.pyc
                • hookspec.cpython-36.pyc
                • doctest.cpython-36.pyc
                • terminal.cpython-36.pyc
                • reports.cpython-36.pyc
                • capture.cpython-36.pyc
                • _version.cpython-36.pyc
                • compat.cpython-36.pyc
                • logging.cpython-36.pyc
              • terminal.py
              • warning_types.py
              • mark
                • __pycache__
                  • __init__.cpython-36.pyc
                  • evaluate.cpython-36.pyc
                  • structures.cpython-36.pyc
                  • legacy.cpython-36.pyc
                • evaluate.py
                • legacy.py
                • __init__.py
                • structures.py
              • pytester.py
              • reports.py
              • nodes.py
              • freeze_support.py
              • pastebin.py
              • _argcomplete.py
              • config
                • findpaths.py
                • argparsing.py
                • exceptions.py
                • __pycache__
                  • findpaths.cpython-36.pyc
                  • __init__.cpython-36.pyc
                  • exceptions.cpython-36.pyc
                  • argparsing.cpython-36.pyc
                • __init__.py
              • debugging.py
              • monkeypatch.py
              • _code
                • source.py
                • __pycache__
                  • code.cpython-36.pyc
                  • __init__.cpython-36.pyc
                  • source.cpython-36.pyc
                  • _py2traceback.cpython-36.pyc
                • _py2traceback.py
                • code.py
                • __init__.py
              • cacheprovider.py
              • helpconfig.py
              • unittest.py
              • __init__.py
              • main.py
              • fixtures.py
              • warnings.py
              • python_api.py
              • python.py
              • _version.py
              • runner.py
              • deprecated.py
              • setupplan.py
              • assertion
                • util.py
                • __pycache__
                  • truncate.cpython-36.pyc
                  • __init__.cpython-36.pyc
                  • rewrite.cpython-36.pyc
                  • util.cpython-36.pyc
                • truncate.py
                • __init__.py
                • rewrite.py
              • recwarn.py
              • logging.py
              • compat.py
              • resultlog.py
              • nose.py
              • outcomes.py
              • setuponly.py
            • decorator-4.3.0.dist-info
              • METADATA
              • top_level.txt
              • pbr.json
              • metadata.json
              • WHEEL
              • INSTALLER
              • DESCRIPTION.rst
              • RECORD
            • six-1.11.0.dist-info
              • METADATA
              • top_level.txt
              • metadata.json
              • WHEEL
              • INSTALLER
              • DESCRIPTION.rst
              • RECORD
            • wheel
              • pep425tags.py
              • pkginfo.py
              • util.py
              • __pycache__
                • pkginfo.cpython-36.pyc
                • wheelfile.cpython-36.pyc
                • metadata.cpython-36.pyc
                • pep425tags.cpython-36.pyc
                • __init__.cpython-36.pyc
                • util.cpython-36.pyc
                • bdist_wheel.cpython-36.pyc
                • __main__.cpython-36.pyc
              • cli
                • __pycache__
                  • unpack.cpython-36.pyc
                  • __init__.cpython-36.pyc
                  • convert.cpython-36.pyc
                  • pack.cpython-36.pyc
                  • install.cpython-36.pyc
                • convert.py
                • __init__.py
                • pack.py
                • install.py
                • unpack.py
              • wheelfile.py
              • __main__.py
              • metadata.py
              • bdist_wheel.py
              • __init__.py
            • coveralls-1.5.1.dist-info
              • METADATA
              • top_level.txt
              • WHEEL
              • INSTALLER
              • entry_points.txt
              • RECORD
              • LICENSE.txt
            • findiff
              • vector.py
              • coefs.py
              • __pycache__
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                • _macosx.cpython-36m-darwin.so
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                  • jquery
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                • tkagg.py
                • windowing.py
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              • _cm_listed.py
              • pylab.py
              • cm.py
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              • legend_handler.py
              • path.py
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              • axis.py
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              • sphinxext
                • __init__.py
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                    • index.rst
                    • conf.py
                    • some_plots.rst
                    • _static
                      • README.txt
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                • plot_directive.py
              • table.py
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              • compat
                • subprocess.py
                • __init__.py
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              • colorbar.py
              • collections.py
              • tight_layout.py
              • _cm.py
              • patheffects.py
              • afm.py
              • _mathtext_data.py
              • artist.py
              • legend.py
              • bezier.py
              • dviread.py
              • docstring.py
              • _png.cpython-36m-darwin.so
              • mlab.py
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              • axes
                • _subplots.py
                • __init__.py
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                • __init__.py
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              • mpl-data
                • stylelib
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                  • seaborn-bright.mplstyle
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                • matplotlibrc
              • streamplot.py
              • patches.py
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              • tests
                • mpltest.ttf
                • test_basic.py
                • cmr10.pfb
                • test_animation.py
                • test_backend_ps.py
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                • test_matplotlib.py
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                • test_quiver.py
                • test_backend_tools.py
                • test_usetex.py
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                • test_backend_pdf.py
                • __init__.py
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                • test_text.py
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                • test_backend_nbagg.py
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                • __init__.py
                • trifinder.py
                • triinterpolate.py
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              • transforms.py
              • fontconfig_pattern.py
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              • cbook
                • deprecation.py
                • __init__.py
              • testing
                • determinism.py
                • decorators.py
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                • disable_internet.py
                • __init__.py
                • compare.py
                • jpl_units
                  • EpochConverter.py
                  • UnitDbl.py
                  • StrConverter.py
                  • Duration.py
                  • UnitDblConverter.py
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                  • __init__.py
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