java.util.TreeSet Java Examples
The following examples show how to use
java.util.TreeSet.
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Example #1
Source File: ShoulderPeaksFilter.java From mzmine2 with GNU General Public License v2.0 | 7 votes |
/** * This function remove peaks encountered in the lateral of a main peak (currentCandidate) that * are considered as garbage, for example FTMS shoulder peaks. * * First calculates a peak model (Gauss, Lorenzian, etc) defined by peakModelName parameter, with * the same position (m/z) and height (intensity) of the currentCandidate, and the defined * resolution (resolution parameter). Second search and remove all the lateral peaks that are * under the curve of the modeled peak. * */ private static void removeLateralPeaks(DataPoint currentCandidate, TreeSet<DataPoint> candidates, PeakModel peakModel, double resolution) { // We set our peak model with same position(m/z), height(intensity) and // resolution of the current peak peakModel.setParameters(currentCandidate.getMZ(), currentCandidate.getIntensity(), resolution); // We search over all peak candidates and remove all of them that are // under the curve defined by our peak model Iterator<DataPoint> candidatesIterator = candidates.iterator(); while (candidatesIterator.hasNext()) { DataPoint lateralCandidate = candidatesIterator.next(); // Condition in x domain (m/z) if ((lateralCandidate.getIntensity() < peakModel.getIntensity(lateralCandidate.getMZ()))) { candidatesIterator.remove(); } } }
Example #2
Source File: FloatDataset.java From january with Eclipse Public License 1.0 | 6 votes |
@Override public FloatDataset getUniqueItems() { Set<Float> set = new TreeSet<Float>(); // CLASS_TYPE IndexIterator it = getIterator(); while (it.hasNext()) { set.add(data[it.index]); } FloatDataset u = new FloatDataset(set.size()); // CLASS_TYPE int i = 0; float[] udata = u.getData(); // PRIM_TYPE for (Float v : set) { // CLASS_TYPE udata[i++] = v; } return u; }
Example #3
Source File: IndependenceScorer.java From blip with GNU Lesser General Public License v3.0 | 6 votes |
@Override protected void prepare() { super.prepare(); // Initialize everything closed = new TCustomHashSet<int[]>(new ArrayHashingStrategy()); // Parent set already seen open = new TreeSet<OpenParentSet>(); // Parent set to evaluate if (max_pset_size <= 1) { return; } // Consider all two-parent set for evaluation for (int i = 0; i < parents.length; i++) { for (int j = i + 1; j < parents.length; j++) { addParentSetToEvaluate(new int[] { parents[i]}, parents[j], null); } } }
Example #4
Source File: GroupNodeTest.java From GDH with MIT License | 6 votes |
@Test public void testDifferentGroup() { Node n1 = new Node(ip1, port1); Node n2 = new Node(ip1, port2); Node n3 = new Node(ip1, port1); Node n4 = new Node(ip1, "3002"); TreeSet<Node> set = new TreeSet<>(); TreeSet<Node> set2 = new TreeSet<>(); set.add(n1); set.add(n2); set2.add(n3); set2.add(n4); Group g1 = new Group(new Configuration(), n1, n2); Group g2 = new Group(new Configuration(), n3, n4); Assert.assertTrue(n1.equals(n3)); Assert.assertTrue(g1.hashCode() != g2.hashCode()); Assert.assertTrue(!g1.equals(g2)); }
Example #5
Source File: CommonProxyFactory.java From terracotta-platform with Apache License 2.0 | 6 votes |
private static SortedSet<MethodDescriptor> getSortedMethods(final Class<?> type) { SortedSet<MethodDescriptor> methods = new TreeSet<MethodDescriptor>(METHOD_COMPARATOR); if (type == null) { return methods; } final Method[] declaredMethods = type.getDeclaredMethods(); if (declaredMethods.length > 256) { throw new IllegalArgumentException("Can't proxy that many methods on a single instance!"); } for (Method declaredMethod : declaredMethods) { methods.add(MethodDescriptor.of(declaredMethod)); } if (methods.size() != declaredMethods.length) { throw new AssertionError("Ouch... looks like that didn't work!"); } return methods; }
Example #6
Source File: LauncherLaunchInterceptor.java From pinpoint with Apache License 2.0 | 6 votes |
private Set<String> extractLibJarNamesFromURLs(URL[] urls) { if (urls == null) { return Collections.emptySet(); } Set<String> libJarNames = new TreeSet<String>(String.CASE_INSENSITIVE_ORDER); for (URL url : urls) { try { String libJarName = extractLibJarName(url); if (libJarName.length() > 0) { libJarNames.add(libJarName); } } catch (Exception e) { // safety net logger.warn("Error extracting library name", e); } } return libJarNames; }
Example #7
Source File: MapperFactory.java From freehealth-connector with GNU Affero General Public License v3.0 | 6 votes |
public static Mapper getMapper(String... mappingFiles) { Set<String> mappingSet = new TreeSet(); mappingSet.addAll(Arrays.asList(mappingFiles)); MessageDigest complete = DigestUtils.getMd5Digest(); Iterator i$ = mappingSet.iterator(); while(i$.hasNext()) { String mapping = (String)i$.next(); complete.update(mapping.getBytes()); } String key = new String(Base64.encode(complete.digest())); if (!cache.containsKey(key)) { Map<String, Object> options = new HashMap(); options.put("be.ehealth.technicalconnector.mapper.configfiles", mappingFiles); try { cache.put(key, helper.getImplementation(options)); } catch (TechnicalConnectorException var6) { throw new IllegalArgumentException(var6); } } return (Mapper)cache.get(key); }
Example #8
Source File: HttpManagementUtil.java From qpid-broker-j with Apache License 2.0 | 6 votes |
public static String getRequestPrincipals(HttpServletRequest httpRequest) { HttpSession session = httpRequest.getSession(false); if (session != null) { Subject subject = HttpManagementUtil.getAuthorisedSubject(httpRequest); if (subject != null) { Set<Principal> principalSet = subject.getPrincipals(); if (!principalSet.isEmpty()) { TreeSet<String> principalNames = new TreeSet<>(); for (Principal principal : principalSet) { principalNames.add(principal.getName()); } return principalNames.toString(); } } } return null; }
Example #9
Source File: ForwardRegisterTrackingTransformationProviderTest.java From binnavi with Apache License 2.0 | 6 votes |
@Test public void testTransformSubIdenticalInput() { final RegisterTrackingTransformationProvider transformationProvider = new RegisterTrackingTransformationProvider(new RegisterTrackingOptions(false, new TreeSet<String>(), false, AnalysisDirection.DOWN)); final ReilInstruction instruction = ReilHelpers.createSub(0, OperandSize.DWORD, "ecx", OperandSize.DWORD, "ecx", OperandSize.DWORD, "eax"); final Pair<RegisterSetLatticeElement, RegisterSetLatticeElement> transformationResult = transformationProvider.transformSub(instruction, createTaintedState("ecx", "eax")); Assert.assertNull(transformationResult.second()); transformationResult.first().onInstructionExit(); Assert.assertTrue(transformationResult.first().getNewlyTaintedRegisters().isEmpty()); Assert.assertTrue(transformationResult.first().getReadRegisters().isEmpty()); Assert.assertFalse(transformationResult.first().getTaintedRegisters().contains("eax")); Assert.assertTrue(transformationResult.first().getTaintedRegisters().contains("ecx")); Assert.assertTrue(transformationResult.first().getUntaintedRegisters().contains("eax")); Assert.assertTrue(transformationResult.first().getUpdatedRegisters().isEmpty()); }
Example #10
Source File: UserDictionaryList.java From Android-Keyboard with Apache License 2.0 | 6 votes |
/** * Creates the entries that allow the user to go into the user dictionary for each locale. * @param userDictGroup The group to put the settings in. */ protected void createUserDictSettings(final PreferenceGroup userDictGroup) { final Activity activity = getActivity(); userDictGroup.removeAll(); final TreeSet<String> localeSet = UserDictionaryList.getUserDictionaryLocalesSet(activity); if (localeSet.size() > 1) { // Have an "All languages" entry in the languages list if there are two or more active // languages localeSet.add(""); } if (localeSet.isEmpty()) { userDictGroup.addPreference(createUserDictionaryPreference(null)); } else { for (String locale : localeSet) { userDictGroup.addPreference(createUserDictionaryPreference(locale)); } } }
Example #11
Source File: DependencyNode.java From depgraph-maven-plugin with Apache License 2.0 | 6 votes |
private DependencyNode(Artifact artifact, NodeResolution resolution, String effectiveVersion) { if (artifact == null) { throw new NullPointerException("Artifact must not be null"); } this.effectiveVersion = effectiveVersion; this.scopes = new TreeSet<>(); this.classifiers = new TreeSet<>(); this.types = new TreeSet<>(); this.artifact = artifact; this.resolution = resolution; if (artifact.getScope() != null) { this.scopes.add(artifact.getScope()); } this.types.add(artifact.getType()); if (!isNullOrEmpty(artifact.getClassifier())) { this.classifiers.add(artifact.getClassifier()); } }
Example #12
Source File: PostgreSqlRule.java From booties with Apache License 2.0 | 6 votes |
/** * Finds all the resource names contained in this file system folder. * * @param scanRootLocation * The root location of the scan on disk. * @param folder * The folder to look for resources under on disk. * @return The resource names; * @throws IOException * when the folder could not be read. */ private Set<String> findResourceNamesFromFileSystem(String scanRootLocation, File folder) throws IOException { LOG.debug("Scanning for resources in path: " + folder.getPath() + " (" + scanRootLocation + ")"); Set<String> resourceNames = new TreeSet<String>(); File[] files = folder.listFiles(); for (File file : files) { if (file.canRead()) { if (file.isDirectory()) { resourceNames.addAll(findResourceNamesFromFileSystem(scanRootLocation, file)); } else { resourceNames.add(file.getPath()); } } } return resourceNames; }
Example #13
Source File: GetServicePort.java From openshift-ping with Apache License 2.0 | 6 votes |
private Set<DnsRecord> getDnsRecords(String serviceName) throws Exception { Set<DnsRecord> dnsRecords = new TreeSet<DnsRecord>(); Hashtable<String, String> env = new Hashtable<String, String>(); env.put(Context.INITIAL_CONTEXT_FACTORY, "com.sun.jndi.dns.DnsContextFactory"); env.put(Context.PROVIDER_URL, "dns:"); env.put("com.sun.jndi.dns.recursion", "false"); // default is one second, but os skydns can be slow env.put("com.sun.jndi.dns.timeout.initial", "2000"); // retries handled by DnsPing //env.put("com.sun.jndi.dns.timeout.retries", "4"); DirContext ctx = new InitialDirContext(env); Attributes attrs = ctx.getAttributes("_tcp." + serviceName, new String[]{"SRV"}); if (attrs == null) { return dnsRecords; } NamingEnumeration<?> servers = attrs.get("SRV").getAll(); while (servers.hasMore()) { DnsRecord record = DnsRecord.fromString((String)servers.next()); dnsRecords.add(record); } return dnsRecords; }
Example #14
Source File: DateFolderFlagDistributor.java From datawave with Apache License 2.0 | 6 votes |
@Override public boolean addInputFile(InputFile inputFile) throws UnusableFileException { String path = inputFile.getDirectory(); long slice = util.getBucket(grouping, path); // we should never use default... String folder = "default"; for (String string : folders) { if (path.contains(string)) { folder = string; break; } } DFKey bucket = new DFKey(slice, folder); Set<InputFile> bucketList = buckets.get(bucket); if (bucketList == null) { bucketList = new TreeSet<>(fc.isLifo() ? InputFile.LIFO : InputFile.FIFO); buckets.put(bucket, bucketList); } return bucketList.add(inputFile); }
Example #15
Source File: NumberFormatDialog.java From tracker with GNU General Public License v3.0 | 6 votes |
/** * Gets an array of unit dimensions for all currently selected variables. * * @return array of unit dimensions */ private String[] getCurrentDimensions() { TTrack track = TTrack.getTrack(trackID); if (track==null) return new String[0]; Class<? extends TTrack> trackType = getTrackType(track); TreeSet<String> dimensions = new TreeSet<String>(); int[] indices = variableList.getSelectedIndices(); Object[] selected = new Object[indices.length]; for (int j=0; j<indices.length; j++) { selected[j] = displayedNames[indices[j]]; } for (Object displayedName : selected) { String name = realNames.get(displayedName.toString()); String dim = getVariableDimensions(trackType, name); if (dim!=null) { dimensions.add(dim); } } return dimensions.toArray(new String[dimensions.size()]); }
Example #16
Source File: Anaphora.java From fnlp with GNU Lesser General Public License v3.0 | 6 votes |
private void init(String[][][]stringTag,String str) throws Exception{ ts = new TreeSet<Entity>(); llis = new LinkedList<Instance>(); fc = new FormChanger(); test = new InstanceSet(cl.getPipe()); test.loadThruPipes(new AR_Reader(stringTag,str)); for(int i=0;i<test.size();i++){ String ss = cl.getStringLabel(test.getInstance(i)); if(ss.equals("1")){ llis.add(test.getInstance(i)); } } fc.groupToList(llis); fc.getLlsb(); ts = fc.getTs(); }
Example #17
Source File: MainActivity.java From AnimatedGridView with Apache License 2.0 | 6 votes |
@Override public boolean onOptionsItemSelected(MenuItem item) { // Handle action bar item clicks here. The action bar will // automatically handle clicks on the Home/Up button, so long // as you specify a parent activity in AndroidManifest.xml. int id = item.getItemId(); if (id == R.id.action_remove) { if (agv.getCount() >= 6) { TreeSet<Integer> row = new TreeSet<Integer>(); row.add(0); agv.animateDeleteRow(row, 200); } return true; } else if (id == R.id.action_add) { LinkedList<Object> items = new LinkedList<Object>(); items.add(1); items.add(2); items.add(3); items.add(4); items.add(5); items.add(6); agv.animateAddCells(items, 200); } return super.onOptionsItemSelected(item); }
Example #18
Source File: Percentiles.java From vanillacore with Apache License 2.0 | 6 votes |
/** * Returns a new instance that keeps only the percentiles with values * falling within the specified range. All new percentiles are adjusted such * that the last value has the 100% percentage. * * @param range * the range within which the percentiles will be preserved * @return a new instance that keeps only the percentiles falling within the * specified range; or <code>null</code> if no such a percentile */ public Percentiles percentiles(ConstantRange range) { SortedSet<Constant> sorted = values(); SortedSet<Constant> contained = new TreeSet<Constant>(); Constant prev = null; for (Constant pct : sorted) { if (range.contains(pct)) { contained.add(pct); } else if (contained.isEmpty()) prev = pct; } if (contained.isEmpty()) return null; double prevPercent = prev == null ? 0.0 : pcts.get(prev); double totalPercent = pcts.get(contained.last()) - prevPercent; Map<Constant, Double> newPcts = new HashMap<Constant, Double>(); for (Constant p : contained) newPcts.put(p, (pcts.get(p) - prevPercent) / totalPercent); return new Percentiles(newPcts); }
Example #19
Source File: Class_.java From unitime with Apache License 2.0 | 6 votes |
public String instructorText(String instructorNameFormat, String separator){ if (getClassInstructors() == null) return ""; TreeSet sortedInstructors = new TreeSet(new InstructorComparator()); sortedInstructors.addAll(this.getClassInstructors()); StringBuffer sb = new StringBuffer(); for (Iterator it = sortedInstructors.iterator(); it.hasNext();) { ClassInstructor ci = (ClassInstructor) it.next(); sb.append(ci.getInstructor().getName(instructorNameFormat)); if (it.hasNext()) sb.append(separator); } return sb.toString(); }
Example #20
Source File: JAXBContextImpl.java From openjdk-jdk8u with GNU General Public License v2.0 | 5 votes |
@Override public String toString() { StringBuilder buf = new StringBuilder(Which.which(getClass()) + " Build-Id: " + getBuildId()); buf.append("\nClasses known to this context:\n"); Set<String> names = new TreeSet<String>(); // sort them so that it's easy to read for (Class key : beanInfoMap.keySet()) names.add(key.getName()); for(String name: names) buf.append(" ").append(name).append('\n'); return buf.toString(); }
Example #21
Source File: AlertsEngineImpl.java From hawkular-alerts with Apache License 2.0 | 5 votes |
private TreeSet<Event> processEventsExtensions(TreeSet<Event> events) { Set<EventExtension> extensions = extensionsService.getEventExtensions(); if (!extensions.isEmpty()) { for (EventExtension extension : extensions) { events = extension.processEvents(events); } } return events; }
Example #22
Source File: ResourceModelImpl.java From RADL with Apache License 2.0 | 5 votes |
private Collection<String> getResourcesWithSameLocationAndDifferentMethods(Collection<String> resourcesToProcess, String resource, String uri, Collection<Method> methods) { Collection<String> result = new TreeSet<>(); result.add(resource); for (String otherResource : resourcesToProcess) { if (isResourceWithSameLocationAndDifferentMethods(resource, uri, methods, otherResource)) { result.add(otherResource); } } return result; }
Example #23
Source File: NetUtils.java From netbeans with Apache License 2.0 | 5 votes |
/** * Retrieve {@link Set} of IPv4 addresses of this host. * <p/> * @return {@link Set} of IPv4 addresses of this host. */ public static Set<Inet4Address> getHostIP4s() { Set<Inet4Address> addrs = new TreeSet<>(INET_ADDRESS_COMPARATOR); for (InetAddress a : getHostIPs()) { if (a instanceof Inet4Address) { addrs.add((Inet4Address) a); } } return addrs; }
Example #24
Source File: BenchmarkResultsPrinter.java From presto with Apache License 2.0 | 5 votes |
private static List<String> getSelectedQueryTagNames(Iterable<Suite> suites, Iterable<BenchmarkQuery> queries) { SortedSet<String> tags = new TreeSet<>(); for (Suite suite : suites) { for (BenchmarkQuery query : suite.selectQueries(queries)) { tags.addAll(query.getTags().keySet()); } for (RegexTemplate regexTemplate : suite.getSchemaNameTemplates()) { tags.addAll(regexTemplate.getFieldNames()); } } return ImmutableList.copyOf(tags); }
Example #25
Source File: TestExplicitColumnTracker.java From hbase with Apache License 2.0 | 5 votes |
/** * Regression test for HBASE-2545 */ @Test public void testInfiniteLoop() throws IOException { TreeSet<byte[]> columns = new TreeSet<>(Bytes.BYTES_COMPARATOR); columns.addAll(Arrays.asList(new byte[][] { col2, col3, col5 })); List<byte[]> scanner = Arrays.<byte[]> asList(new byte[][] { col1, col4 }); List<ScanQueryMatcher.MatchCode> expected = Arrays.<ScanQueryMatcher.MatchCode> asList( new ScanQueryMatcher.MatchCode[] { ScanQueryMatcher.MatchCode.SEEK_NEXT_COL, ScanQueryMatcher.MatchCode.SEEK_NEXT_COL }); runTest(1, columns, scanner, expected); }
Example #26
Source File: ExecutionCourse.java From fenixedu-academic with GNU Lesser General Public License v3.0 | 5 votes |
public SortedSet<WrittenEvaluation> getWrittenEvaluations() { final SortedSet<WrittenEvaluation> writtenEvaluations = new TreeSet<>(WrittenEvaluation.COMPARATOR_BY_BEGIN_DATE); for (final Evaluation evaluation : getAssociatedEvaluationsSet()) { if (evaluation instanceof WrittenEvaluation) { writtenEvaluations.add((WrittenEvaluation) evaluation); } } return writtenEvaluations; }
Example #27
Source File: Context.java From vasco with GNU Lesser General Public License v2.1 | 5 votes |
/** * Creates a new context for phantom method * * @param method */ public Context(M method) { count++; this.id = count; this.method = method; this.inValues = new HashMap<N, A>(); this.outValues = new HashMap<N, A>(); this.analysed = false; this.workList = new TreeSet<N>(); this.workListOfEdges = new LinkedList<Pair<N, N>>(); }
Example #28
Source File: ReplicatedServer.java From unitime with Apache License 2.0 | 5 votes |
protected void remove(XOffering offering, boolean removeExpectations) { Lock lock = writeLock(); try { for (XCourse course: offering.getCourses()) { iCourseForId.getAdvancedCache().withFlags(Flag.IGNORE_RETURN_VALUES).remove(course.getCourseId()); TreeSet<XCourseId> courses = iCourseForName.get(course.getCourseNameInLowerCase()); if (courses != null) { courses.remove(course); if (courses.size() == 1) for (XCourseId x: courses) x.setHasUniqueName(true); if (courses.isEmpty()) iCourseForName.getAdvancedCache().withFlags(Flag.IGNORE_RETURN_VALUES).remove(course.getCourseNameInLowerCase()); else iCourseForName.getAdvancedCache().withFlags(Flag.IGNORE_RETURN_VALUES).put(course.getCourseNameInLowerCase(), courses); } } iOfferingTable.getAdvancedCache().withFlags(Flag.IGNORE_RETURN_VALUES).remove(offering.getOfferingId()); if (removeExpectations) iExpectations.getAdvancedCache().withFlags(Flag.IGNORE_RETURN_VALUES).remove(offering.getOfferingId()); for (String externalId: offering.getInstructorExternalIds()) { Set<Long> offeringIds = iInstructedOfferings.get(externalId); if (offeringIds != null) { if (offeringIds.remove(offering.getOfferingId())) iInstructedOfferings.getAdvancedCache().withFlags(Flag.IGNORE_RETURN_VALUES).put(externalId, offeringIds); } } } finally { lock.release(); } }
Example #29
Source File: MeanShift.java From clust4j with Apache License 2.0 | 5 votes |
SerialCenterIntensity(RadiusNeighbors nbrs) { LogTimer timer; // Now get single seed members MeanShiftSeed sd; this.computedSeeds = new TreeSet<>(); final double[][] X = data.getData(); int idx = 0; for(double[] seed: seeds) { idx++; timer = new LogTimer(); sd = singleSeed(seed, nbrs, X, maxIter); if(null == sd) continue; computedSeeds.add(sd); itrz = FastMath.max(itrz, sd.iterations); // If it actually converged, add the summary summaries.add(new SummaryLite( "Kernel "+(idx - 1), sd.iterations, timer.formatTime(), timer.wallTime() )); } }
Example #30
Source File: ImportStatements.java From Refaster with Apache License 2.0 | 5 votes |
public ImportStatements(JCExpression packageTree, List<JCImport> importTrees, ErrorProneEndPosMap endPosMap) { // find start, end positions for current list of imports (for replacement) if (importTrees.isEmpty()) { // start/end positions are just after the package expression hasExistingImports = false; startPos = endPosMap.getEndPosition(packageTree) + 2; // +2 for semicolon and newline endPos = startPos; } else { // process list of imports and find start/end positions hasExistingImports = true; for (JCImport importTree : importTrees) { int currStartPos = importTree.getStartPosition(); int currEndPos = endPosMap.getEndPosition(importTree); startPos = Math.min(startPos, currStartPos); endPos = Math.max(endPos, currEndPos); } } // sanity check for start/end positions Preconditions.checkState(startPos <= endPos); // convert list of JCImports to list of strings importStrings = new TreeSet<>(IMPORT_ORDERING); importStrings.addAll(Lists.transform(importTrees, new Function<JCImport, String>() { @Override public String apply(JCImport input) { String importExpr = input.toString(); return importExpr.substring(0, importExpr.length() - 2); // snip trailing ";\n" } })); }