Java Code Examples for org.hl7.fhir.dstu3.model.Observation#setSubject()
The following examples show how to use
org.hl7.fhir.dstu3.model.Observation#setSubject() .
You can vote up the ones you like or vote down the ones you don't like,
and go to the original project or source file by following the links above each example. You may check out the related API usage on the sidebar.
Example 1
| Source File: ObservationStatsBuilder.java From org.hl7.fhir.core with Apache License 2.0 | 7 votes |
|
private static void addAge(Bundle b, int y, int m, String v) throws FHIRException {
Observation obs = new Observation();
obs.setId("obs-example-age-weight-"+Integer.toString(y)+"-"+Integer.toString(m));
obs.setSubject(new Reference().setReference("Patient/123"));
obs.setStatus(ObservationStatus.FINAL);
Calendar when = Calendar.getInstance();
when.add(Calendar.YEAR, -y);
when.add(Calendar.MONTH, m);
obs.setEffective(new DateTimeType(when));
obs.getCode().addCoding().setCode("29463-7").setSystem("http://loinc.org");
obs.setValue(new Quantity());
obs.getValueQuantity().setCode("kg");
obs.getValueQuantity().setSystem("http://unitsofmeasure.org");
obs.getValueQuantity().setUnit("kg");
obs.getValueQuantity().setValue(new BigDecimal(v));
b.addEntry().setFullUrl("http://hl7.org/fhir/Observation/"+obs.getId()).setResource(obs);
}
Example 2
| Source File: ArgonautConverter.java From org.hl7.fhir.core with Apache License 2.0 | 6 votes |
|
private void processSocialHistorySection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
scanSection("Social History", section);
int i = 0;
for (Element c : cda.getChildren(section, "entry")) {
Element o = cda.getChild(c, "observation");
Observation obs = new Observation();
obs.setId(context.baseId+"-smoking-"+(i == 0 ? "" : Integer.toString(i)));
obs.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/observation-daf-smokingstatus-dafsmokingstatus");
i++;
obs.setSubject(context.subjectRef);
obs.setContext(new Reference().setReference("Encounter/"+context.encounter.getId()));
obs.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(o, "code")), new Coding().setSystem("http://loinc.org").setCode("72166-2")));
boolean found = false;
for (Element e : cda.getChildren(o, "id")) {
Identifier id = convert.makeIdentifierFromII(e);
obs.getIdentifier().add(convert.makeIdentifierFromII(e));
}
if (!found) {
obs.setStatus(ObservationStatus.FINAL);
obs.setEffective(convert.makeDateTimeFromTS(cda.getChild(o, "effectiveTime")));
obs.setValue(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(o, "value")), null));
saveResource(obs, "-sh");
}
}
}
Example 3
| Source File: ObservationStatsBuilder.java From org.hl7.fhir.core with Apache License 2.0 | 5 votes |
|
private static Observation baseVitals(Bundle b, Calendar when, int min, String name, String lCode, String text) throws FHIRFormatError {
Observation obs = new Observation();
obs.setId("obs-vitals-"+name+"-"+Integer.toString(min));
obs.setSubject(new Reference().setReference("Patient/123"));
obs.setStatus(ObservationStatus.FINAL);
obs.setEffective(new DateTimeType(when));
obs.addCategory().setText("Vital Signs").addCoding().setSystem("http://hl7.org/fhir/observation-category").setCode("vital-signs").setDisplay("Vital Signs");
obs.getCode().setText(text).addCoding().setCode(lCode).setSystem("http://loinc.org");
b.addEntry().setFullUrl("http://hl7.org/fhir/Observation/"+obs.getId()).setResource(obs);
return obs;
}
Example 4
| Source File: ArgonautConverter.java From org.hl7.fhir.core with Apache License 2.0 | 5 votes |
|
private Observation processObservation(CDAUtilities cda, Convert convert, Context context, Element o) throws Exception {
Observation obs = new Observation();
obs.setId(context.baseId+"-results-"+Integer.toString(context.obsId));
context.obsId++;
obs.setSubject(context.subjectRef);
obs.setContext(new Reference().setReference("Encounter/"+context.encounter.getId()));
obs.setStatus(ObservationStatus.FINAL);
obs.setEffective(convert.makeDateTimeFromTS(cda.getChild(o, "effectiveTime")));
obs.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(o, "code")), null));
obs.setInterpretation(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(o, "interpretationCode")), null));
Element rr = cda.getChild(o, "referenceRange");
if (rr != null)
obs.addReferenceRange().setText(cda.getChild(cda.getChild(rr, "observationRange"), "text").getTextContent());
Element v = cda.getChild(o, "value");
String type = v.getAttribute("xsi:type");
if ("ST".equals(type)) {
obs.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/observation-daf-results-dafresultobsother");
obs.setValue(new StringType(v.getTextContent()));
} else if ("CD".equals(type)) {
obs.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/observation-daf-results-dafresultobscode");
obs.setValue(inspectCode(convert.makeCodeableConceptFromCD(v), null));
} else if ("PQ".equals(type)) {
obs.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/observation-daf-results-dafresultobsquantity");
String va = cda.getChild(o, "value").getAttribute("value");
if (!Utilities.isDecimal(va, true)) {
obs.setDataAbsentReason(inspectCode(new CodeableConcept().setText(va), null));
} else
obs.setValue(convert.makeQuantityFromPQ(cda.getChild(o, "value"), null));
} else
throw new Exception("Unknown type '"+type+"'");
for (Element e : cda.getChildren(o, "id")) {
Identifier id = convert.makeIdentifierFromII(e);
obs.getIdentifier().add(id);
}
saveResource(obs, "-gen");
return obs;
}
Example 5
| Source File: ArgonautConverter.java From org.hl7.fhir.core with Apache License 2.0 | 4 votes |
|
private void processVitalSignsSection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
scanSection("Vital Signs", section);
ListResource list = new ListResource();
list.setId(context.baseId+"-list-vitalsigns");
//. list.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/list-daf-dafproblemlist"); no list
list.setSubject(context.subjectRef);
list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")), null));
list.setTitle(cda.getChild(section, "title").getTextContent());
list.setStatus(ListStatus.CURRENT);
list.setMode(ListMode.SNAPSHOT);
list.setDateElement(context.now);
list.setSource(context.authorRef);
buildNarrative(list, cda.getChild(section, "text"));
int i = 0;
for (Element c : cda.getChildren(section, "entry")) {
Element org = cda.getChild(c, "organizer"); // problem concern act
for (Element oc : cda.getChildren(org, "component")) {
Element o = cda.getChild(oc, "observation"); // problem concern act
Observation obs = new Observation();
obs.setId(context.baseId+"-vitals-"+Integer.toString(i));
obs.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/observation-daf-vitalsigns-dafvitalsigns");
i++;
obs.setSubject(context.subjectRef);
obs.setContext(new Reference().setReference("Encounter/"+context.encounter.getId()));
obs.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(o, "code")), null));
boolean found = false;
for (Element e : cda.getChildren(o, "id")) {
Identifier id = convert.makeIdentifierFromII(e);
obs.getIdentifier().add(id);
}
if (!found) {
list.addEntry().setItem(new Reference().setReference("Observation/"+obs.getId()));
obs.setStatus(ObservationStatus.FINAL);
obs.setEffective(convert.makeDateTimeFromTS(cda.getChild(o, "effectiveTime")));
String v = cda.getChild(o, "value").getAttribute("value");
if (!Utilities.isDecimal(v, true)) {
obs.setDataAbsentReason(inspectCode(new CodeableConcept().setText(v), null));
} else
obs.setValue(convert.makeQuantityFromPQ(cda.getChild(o, "value")));
saveResource(obs, "-vs");
}
}
}
saveResource(list, "-vs");
}
