Java Code Examples for org.hl7.fhir.dstu3.model.Coding

The following examples show how to use org.hl7.fhir.dstu3.model.Coding. These examples are extracted from open source projects. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. You may check out the related API usage on the sidebar.
Example 1
Source Project: org.hl7.fhir.core   Source File: ArgonautConverter.java    License: Apache License 2.0 6 votes vote down vote up
private CodeableConcept inspectCode(CodeableConcept cc, Coding def) {
	if (cc != null) {
		for (Coding c : cc.getCoding()) {
			if ("http://snomed.info/sct".equals(c.getSystem())) {
				if ("ASSERTION".equals(c.getCode()))
					c.setSystem("http://hl7.org/fhir/v3/ActCode");
			}
			if ("http://hl7.org/fhir/v3/ActCode".equals(c.getSystem()) && "ASSERTION".equals(c.getCode())) {
				if (def == null)
					throw new Error("need a default code");
				c.setSystem(def.getSystem());
				c.setVersion(def.getVersion());
				c.setCode(def.getCode());
				c.setDisplay(def.getDisplay());
			}
		}
	}
	return cc;
}
 
Example 2
Source Project: org.hl7.fhir.core   Source File: ArgonautConverter.java    License: Apache License 2.0 6 votes vote down vote up
private void processSocialHistorySection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
	scanSection("Social History", section);
	int i = 0;
	for (Element c : cda.getChildren(section, "entry")) {
		Element o = cda.getChild(c, "observation");
		Observation obs = new Observation();
		obs.setId(context.baseId+"-smoking-"+(i == 0 ? "" : Integer.toString(i)));
		obs.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/observation-daf-smokingstatus-dafsmokingstatus");
		i++;
		obs.setSubject(context.subjectRef);
		obs.setContext(new Reference().setReference("Encounter/"+context.encounter.getId()));
		obs.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(o, "code")), new Coding().setSystem("http://loinc.org").setCode("72166-2")));

		boolean found = false;
		for (Element e : cda.getChildren(o, "id")) {
			Identifier id = convert.makeIdentifierFromII(e);
			obs.getIdentifier().add(convert.makeIdentifierFromII(e));
		}
		if (!found) {
			obs.setStatus(ObservationStatus.FINAL);
			obs.setEffective(convert.makeDateTimeFromTS(cda.getChild(o, "effectiveTime")));
			obs.setValue(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(o, "value")), null));
			saveResource(obs, "-sh");
		}
	}
}
 
Example 3
Source Project: org.hl7.fhir.core   Source File: Convert.java    License: Apache License 2.0 6 votes vote down vote up
public Coding makeCodingFromCV(Element cd) throws Exception {
if (cd == null || Utilities.noString(cd.getAttribute("code")))
	return null;
 Coding c = new Coding();
 c.setCode(cd.getAttribute("code"));
 c.setDisplay(cd.getAttribute("displayName"));
 String r = cd.getAttribute("codeSystem");
 String uri = getUriForOID(r);
 if (uri != null)
 	c.setSystem(uri);
 else if (isGuid(r)) 
	c.setSystem("urn:uuid:"+r);
else if (UriForOid(r) != null)
	c.setSystem(UriForOid(r));
else 
	c.setSystem("urn:oid:"+r);
 return c;
}
 
Example 4
@Test
public void convertCondition20() throws IOException {
	// condition format of HAPI FHIR 2.0
	String oldContent = AllTests.getResourceAsString("/rsc/json/ConditionFormat20.json");
	assertFalse(FindingsFormatUtil.isCurrentFindingsFormat(oldContent));

	Optional<String> newContent = FindingsFormatUtil.convertToCurrentFindingsFormat(oldContent);
	assertTrue(newContent.isPresent());

	IBaseResource resource = AllTests.getJsonParser().parseResource(newContent.get());
	assertTrue(resource instanceof Condition);
	Condition condition = (Condition) resource;

	// category changed from diagnosis to problem-list-item
	List<CodeableConcept> category = condition.getCategory();
	assertFalse(category.isEmpty());
	CodeableConcept code = category.get(0);
	List<Coding> coding = code.getCoding();
	assertFalse(coding.isEmpty());
	assertTrue(coding.get(0).getCode().equals(ConditionCategory.PROBLEMLISTITEM.getCode()));
	// dateRecorded changed to assertedDate
	Date assertedDate = condition.getAssertedDate();
	assertNotNull(assertedDate);
}
 
Example 5
Source Project: org.hl7.fhir.core   Source File: StructureMapUtilities.java    License: Apache License 2.0 6 votes vote down vote up
@SuppressWarnings("rawtypes")
private String describeTransformCCorC(StructureMapGroupRuleTargetComponent tgt) throws FHIRException {
  if (tgt.getParameter().size() < 2)
    return null;
  Type p1 = tgt.getParameter().get(0).getValue();
  Type p2 = tgt.getParameter().get(1).getValue();
  if (p1 instanceof IdType || p2 instanceof IdType)
    return null;
  if (!(p1 instanceof PrimitiveType) || !(p2 instanceof PrimitiveType))
    return null;
  String uri = ((PrimitiveType) p1).asStringValue();
  String code = ((PrimitiveType) p2).asStringValue();
  if (Utilities.noString(uri))
    throw new FHIRException("Describe Transform, but the uri is blank");
  if (Utilities.noString(code))
    throw new FHIRException("Describe Transform, but the code is blank");
  Coding c = buildCoding(uri, code);
  return NarrativeGenerator.describeSystem(c.getSystem())+"#"+c.getCode()+(c.hasDisplay() ? "("+c.getDisplay()+")" : "");
}
 
Example 6
Source Project: org.hl7.fhir.core   Source File: FHIRToolingClient.java    License: Apache License 2.0 6 votes vote down vote up
public ConceptMap updateClosure(String name, Coding coding) {
  Parameters params = new Parameters();
  params.addParameter().setName("name").setValue(new StringType(name));
  params.addParameter().setName("concept").setValue(coding);
  List<Header> headers = null;
  ResourceRequest<Resource> result = utils.issuePostRequest(resourceAddress.resolveOperationUri(null, "closure", new HashMap<String, String>()),
      utils.getResourceAsByteArray(params, false, isJson(getPreferredResourceFormat())), getPreferredResourceFormat(), headers);
  result.addErrorStatus(410);//gone
  result.addErrorStatus(404);//unknown
  result.addErrorStatus(405);
  result.addErrorStatus(422);//Unprocessable Entity
  result.addSuccessStatus(200);
  result.addSuccessStatus(201);
  if(result.isUnsuccessfulRequest()) {
    throw new EFhirClientException("Server returned error code " + result.getHttpStatus(), (OperationOutcome)result.getPayload());
  }
  return (ConceptMap) result.getPayload();
}
 
Example 7
Source Project: org.hl7.fhir.core   Source File: BaseWorkerContext.java    License: Apache License 2.0 6 votes vote down vote up
private ValidationResult verifyCodeExternal(ValueSet vs, Coding coding, boolean tryCache)
  throws Exception {
  ValidationResult res = vs == null ? null : handleByCache(vs, coding, tryCache);
  if (res != null) {
    return res;
  }
  Parameters pin = new Parameters();
  pin.addParameter().setName("coding").setValue(coding);
  if (vs != null) {
    pin.addParameter().setName("valueSet").setResource(vs);
  }
  res = serverValidateCode(pin, vs == null);
  if (vs != null) {
    Map<String, ValidationResult> cache = validationCache.get(vs.getUrl());
    cache.put(cacheId(coding), res);
  }
  return res;
}
 
Example 8
Source Project: org.hl7.fhir.core   Source File: BaseWorkerContext.java    License: Apache License 2.0 6 votes vote down vote up
@SuppressWarnings("rawtypes")
private String describeValidationParameters(Parameters pin) {
  CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
  for (ParametersParameterComponent p : pin.getParameter()) {
    if (p.hasValue() && p.getValue() instanceof PrimitiveType) {
      b.append(p.getName() + "=" + ((PrimitiveType) p.getValue()).asStringValue());
    } else if (p.hasValue() && p.getValue() instanceof Coding) {
      b.append("system=" + ((Coding) p.getValue()).getSystem());
      b.append("code=" + ((Coding) p.getValue()).getCode());
      b.append("display=" + ((Coding) p.getValue()).getDisplay());
    } else if (p.hasValue() && p.getValue() instanceof CodeableConcept) {
      if (((CodeableConcept) p.getValue()).hasCoding()) {
        Coding c = ((CodeableConcept) p.getValue()).getCodingFirstRep();
        b.append("system=" + c.getSystem());
        b.append("code=" + c.getCode());
        b.append("display=" + c.getDisplay());
      } else if (((CodeableConcept) p.getValue()).hasText()) {
        b.append("text=" + ((CodeableConcept) p.getValue()).getText());
      }
    } else if (p.hasResource() && (p.getResource() instanceof ValueSet)) {
      b.append("valueset=" + getVSSummary((ValueSet) p.getResource()));
    }
  }
  return b.toString();
}
 
Example 9
Source Project: org.hl7.fhir.core   Source File: BaseWorkerContext.java    License: Apache License 2.0 6 votes vote down vote up
@Override
public ValidationResult validateCode(String system, String code, String display, ValueSet vs) {
  try {
    if (system == null && display == null) {
      return verifyCodeInternal(vs, code);
    }
    if ((codeSystems.containsKey(system) && codeSystems.get(system) != null) || vs
      .hasExpansion()) {
      return verifyCodeInternal(vs, system, code, display);
    } else {
      return verifyCodeExternal(vs,
        new Coding().setSystem(system).setCode(code).setDisplay(display), true);
    }
  } catch (Exception e) {
    return new ValidationResult(IssueSeverity.FATAL,
      "Error validating code \"" + code + "\" in system \"" + system + "\": " + e.getMessage(),
      TerminologyServiceErrorClass.SERVER_ERROR);
  }
}
 
Example 10
Source Project: elexis-3-core   Source File: ObservationAccessor.java    License: Eclipse Public License 1.0 6 votes vote down vote up
public void setCategory(DomainResource resource, ObservationCategory category){
	org.hl7.fhir.dstu3.model.Observation fhirObservation =
		(org.hl7.fhir.dstu3.model.Observation) resource;
	CodeableConcept categoryCode = new CodeableConcept();
	if (category.name().startsWith("SOAP_")) {
		// elexis soap categories
		categoryCode.setCoding(
			Collections.singletonList(new Coding(IdentifierSystem.ELEXIS_SOAP.getSystem(),
				category.getCode(), category.getLocalized())));
	} else {
		org.hl7.fhir.dstu3.model.codesystems.ObservationCategory fhirCategoryCode =
			(org.hl7.fhir.dstu3.model.codesystems.ObservationCategory) categoryMapping
				.getFhirEnumValueByEnum(category);
		if (fhirCategoryCode != null) {
			// lookup matching fhir category
			categoryCode
				.setCoding(Collections.singletonList(new Coding(fhirCategoryCode.getSystem(),
					fhirCategoryCode.toCode(), fhirCategoryCode.getDisplay())));
		} else {
			throw new IllegalStateException("Unknown observation category " + category);
		}
	}
	if (!categoryCode.getCoding().isEmpty()) {
		fhirObservation.setCategory(Collections.singletonList(categoryCode));
	}
}
 
Example 11
@Override
public ConceptEntity findAddCode(Quantity quantity) {
    Coding code = new Coding().setCode(quantity.getCode()).setSystem(quantity.getSystem());
    ConceptEntity conceptEntity = findCode(code);

    // 12/Jan/2018 KGM to cope with LOINC codes and depreciated SNOMED codes.
    if (conceptEntity == null) {
        CodeSystemEntity system = codeSystemRepository.findBySystem(quantity.getSystem());
        if (system !=null) {
            conceptEntity = new ConceptEntity();
            conceptEntity.setCode(quantity.getCode());
            conceptEntity.setDescription(quantity.getUnit());
            conceptEntity.setDisplay(quantity.getUnit());
            conceptEntity.setCodeSystem(system);
            em.persist(conceptEntity);
        } else {
            throw new IllegalArgumentException("Unsupported system "+quantity.getSystem());
        }
    }
    return conceptEntity;
}
 
Example 12
Source Project: synthea   Source File: FhirStu3.java    License: Apache License 2.0 6 votes vote down vote up
/**
 * Helper function to convert a Code into a CodeableConcept. Takes an optional system, which
 * replaces the Code.system in the resulting CodeableConcept if not null.
 *
 * @param from The Code to create a CodeableConcept from.
 * @param system The system identifier, such as a URI. Optional; may be null.
 * @return The converted CodeableConcept
 */
private static CodeableConcept mapCodeToCodeableConcept(Code from, String system) {
  CodeableConcept to = new CodeableConcept();
  system = system == null ? null : ExportHelper.getSystemURI(system);
  from.system = ExportHelper.getSystemURI(from.system);

  if (from.display != null) {
    to.setText(from.display);
  }

  Coding coding = new Coding();
  coding.setCode(from.code);
  coding.setDisplay(from.display);
  if (from.system == null) {
    coding.setSystem(system);
  } else {
    coding.setSystem(from.system);
  }

  to.addCoding(coding);

  return to;
}
 
Example 13
Source Project: org.hl7.fhir.core   Source File: ICPC2Importer.java    License: Apache License 2.0 5 votes vote down vote up
private void processClass(Element cls, Map<String, ConceptDefinitionComponent> concepts, CodeSystem define) throws FHIRFormatError {
  ConceptDefinitionComponent concept = new ConceptDefinitionComponent();
  concept.setCode(cls.getAttribute("code"));
  concept.setDefinition(getRubric(cls, "preferred"));
  String s = getRubric(cls, "shortTitle");
  if (s != null && !s.equals(concept.getDefinition()))
    concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("shortTitle")).setValue(s);
  s = getRubric(cls, "inclusion");
  if (s != null)
    concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("inclusion")).setValue(s);
  s = getRubric(cls, "exclusion");
  if (s != null)
    concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("exclusion")).setValue(s);
  s = getRubric(cls, "criteria");
  if (s != null)
    concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("criteria")).setValue(s);
  s = getRubric(cls, "consider");
  if (s != null)
    concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("consider")).setValue(s);
  s = getRubric(cls, "note");
  if (s != null)
    concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("note")).setValue(s);
  
  concepts.put(concept.getCode(), concept);
  List<Element> children = new ArrayList<Element>(); 
  XMLUtil.getNamedChildren(cls, "SubClass", children);
  if (children.size() > 0)
    CodeSystemUtilities.setNotSelectable(define, concept);
  
  Element parent = XMLUtil.getNamedChild(cls, "SuperClass");
  if (parent == null) {
    define.addConcept(concept);
  } else {
    ConceptDefinitionComponent p = concepts.get(parent.getAttribute("code"));
    p.getConcept().add(concept);
  }
}
 
Example 14
Source Project: org.hl7.fhir.core   Source File: ArgonautConverter.java    License: Apache License 2.0 5 votes vote down vote up
public static void main(String[] args) {
	try {
		ArgonautConverter c = new ArgonautConverter(new UcumEssenceService(UCUM_PATH), Utilities.path(SRC_PATH, "validation.xml.zip"));
		c.destFolder = "C:\\work\\com.healthintersections.fhir\\argonaut\\fhir";
		c.convert("C:\\work\\com.healthintersections.fhir\\argonaut\\cda\\file_emergency", new Coding().setSystem("http://hl7.org/fhir/v3/ActCode").setCode("EMER"));
		c.convert("C:\\work\\com.healthintersections.fhir\\argonaut\\cda\\file_ed", new Coding().setSystem("http://hl7.org/fhir/v3/ActCode").setCode("IMP"));
		c.convert("C:\\work\\com.healthintersections.fhir\\argonaut\\cda\\fileX", new Coding().setSystem("http://hl7.org/fhir/v3/ActCode").setCode("AMB"));
		c.printSectionSummaries();
		c.closeZips();
		System.out.println("All done. "+Integer.toString(c.getErrors())+" errors, "+Integer.toString(c.getWarnings())+" warnings");
	} catch (Exception e) {
		e.printStackTrace();
	}
}
 
Example 15
Source Project: org.hl7.fhir.core   Source File: ArgonautConverter.java    License: Apache License 2.0 5 votes vote down vote up
private Coding convertTextToCoding(String v) {
	v = v.toLowerCase();
	if (v.equals("inpatient"))
		return new Coding().setSystem("http://hl7.org/fhir/v3/ActCode").setCode("IMP");
	if (v.equals("emergency department") ||v.equals("emergency department admit decision"))
		return new Coding().setSystem("http://hl7.org/fhir/v3/ActCode").setCode("EMER");
	if (v.equals("x-ray exam"))
		return new Coding().setSystem("http://hl7.org/fhir/v3/ActCode").setCode("AMB");
	if (v.equals("outpatient"))
		return new Coding().setSystem("http://hl7.org/fhir/v3/ActCode").setCode("AMB");
	throw new Error("unknown encounter type "+v);
}
 
Example 16
Source Project: org.hl7.fhir.core   Source File: ArgonautConverter.java    License: Apache License 2.0 5 votes vote down vote up
private void count(Coding c, Map<String, Integer> map) {
	String s = c.getSystem()+"::"+c.getCode();
	if (map.containsKey(s))
		map.put(s, map.get(s)+1);
	else
		map.put(s, 1);
}
 
Example 17
Source Project: org.hl7.fhir.core   Source File: ObjectConverter.java    License: Apache License 2.0 5 votes vote down vote up
public static Coding readAsCoding(Element item) {
  Coding c = new Coding();
  c.setSystem(item.getNamedChildValue("system"));
  c.setVersion(item.getNamedChildValue("version"));
  c.setCode(item.getNamedChildValue("code"));
  c.setDisplay(item.getNamedChildValue("display"));
  return c;
}
 
Example 18
Source Project: org.hl7.fhir.core   Source File: LoincToDEConvertor.java    License: Apache License 2.0 5 votes vote down vote up
private CodeableConcept makeUnits(String text, String ucum) {
	if (Utilities.noString(text) && Utilities.noString(ucum))
		return null;
	CodeableConcept cc = new CodeableConcept();
	cc.setText(text);
	cc.getCoding().add(new Coding().setCode(ucum).setSystem("http://unitsofmeasure.org"));
	return cc;
}
 
Example 19
Source Project: org.hl7.fhir.core   Source File: RdfParserBase.java    License: Apache License 2.0 5 votes vote down vote up
protected void decorateCoding(Complex t, Coding element) {
	if (!element.hasSystem())
		return;
	if ("http://snomed.info/sct".equals(element.getSystem())) {
		t.prefix("sct", "http://snomed.info/sct/");
		t.predicate("a", "sct:"+element.getCode());
	} else if ("http://snomed.info/sct".equals(element.getSystem())) {
		t.prefix("loinc", "http://loinc.org/rdf#");
		t.predicate("a", "loinc:"+element.getCode());
	}  
}
 
Example 20
Source Project: org.hl7.fhir.core   Source File: ProfileUtilities.java    License: Apache License 2.0 5 votes vote down vote up
private boolean hasDescription(Type fixed) {
  if (fixed instanceof Coding) {
    return ((Coding) fixed).hasDisplay();
  } else if (fixed instanceof CodeableConcept) {
    CodeableConcept cc = (CodeableConcept) fixed;
    if (cc.hasText())
      return true;
    for (Coding c : cc.getCoding())
      if (c.hasDisplay())
       return true;
  } // (fixed instanceof CodeType) || (fixed instanceof Quantity);
  return false;
}
 
Example 21
Source Project: org.hl7.fhir.core   Source File: ProfileUtilities.java    License: Apache License 2.0 5 votes vote down vote up
private String summariseCoding(Coding value) {
  String uri = value.getSystem();
  String system = NarrativeGenerator.describeSystem(uri);
  if (Utilities.isURL(system)) {
    if (system.equals("http://cap.org/protocols"))
      system = "CAP Code";
  }
  return system+" "+value.getCode();
}
 
Example 22
Source Project: org.hl7.fhir.core   Source File: ProfileComparer.java    License: Apache License 2.0 5 votes vote down vote up
private List<Coding> mergeCodings(List<Coding> left, List<Coding> right) {
  List<Coding> result = new ArrayList<Coding>();
  result.addAll(left);
  for (Coding c : right) {
    boolean found = false;
    for (Coding ct : left)
      if (Utilities.equals(c.getSystem(), ct.getSystem()) && Utilities.equals(c.getCode(), ct.getCode()))
        found = true;
    if (!found)
      result.add(c);
  }
  return result;
}
 
Example 23
Source Project: org.hl7.fhir.core   Source File: StructureMapUtilities.java    License: Apache License 2.0 5 votes vote down vote up
private Coding buildCoding(String uri, String code) throws FHIRException {
 // if we can get this as a valueSet, we will
 String system = null;
 String display = null;
 ValueSet vs = Utilities.noString(uri) ? null : worker.fetchResourceWithException(ValueSet.class, uri);
 if (vs != null) {
   ValueSetExpansionOutcome vse = worker.expandVS(vs, true, false);
   if (vse.getError() != null)
     throw new FHIRException(vse.getError());
   CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
   for (ValueSetExpansionContainsComponent t : vse.getValueset().getExpansion().getContains()) {
     if (t.hasCode())
       b.append(t.getCode());
     if (code.equals(t.getCode()) && t.hasSystem()) {
       system = t.getSystem();
        display = t.getDisplay();
       break;
     }
      if (code.equalsIgnoreCase(t.getDisplay()) && t.hasSystem()) {
        system = t.getSystem();
        display = t.getDisplay();
        break;
      }
   }
   if (system == null)
     throw new FHIRException("The code '"+code+"' is not in the value set '"+uri+"' (valid codes: "+b.toString()+"; also checked displays)");
 } else
   system = uri;
 ValidationResult vr = worker.validateCode(system, code, null);
 if (vr != null && vr.getDisplay() != null)
   display = vr.getDisplay();
 return new Coding().setSystem(system).setCode(code).setDisplay(display);
}
 
Example 24
Source Project: org.hl7.fhir.core   Source File: ToolingExtensions.java    License: Apache License 2.0 5 votes vote down vote up
public static void setExtension(Element focus, String url, Coding c) {
  for (Extension e : focus.getExtension()) 
    if (e.getUrl().equals(url)) {
      e.setValue(c);
      return;
    }
  focus.getExtension().add(new Extension().setUrl(url).setValue(c));    
}
 
Example 25
Source Project: elexis-3-core   Source File: ModelUtil.java    License: Eclipse Public License 1.0 5 votes vote down vote up
public static List<ICoding> getCodingsFromConcept(CodeableConcept codeableConcept){
	ArrayList<ICoding> ret = new ArrayList<>();
	List<Coding> coding = codeableConcept.getCoding();
	for (Coding code : coding) {
		ret.add(new CodingWrapper(code));
	}
	return ret;
}
 
Example 26
Source Project: org.hl7.fhir.core   Source File: NarrativeGenerator.java    License: Apache License 2.0 5 votes vote down vote up
private void renderCoding(Coding c, XhtmlNode x, boolean showCodeDetails) {
  String s = "";
  if (c.hasDisplayElement())
    s = c.getDisplay();
  if (Utilities.noString(s))
    s = lookupCode(c.getSystem(), c.getCode());

  if (Utilities.noString(s))
    s = c.getCode();

  if (showCodeDetails) {
    x.addText(s+" (Details: "+describeSystem(c.getSystem())+" code "+c.getCode()+" = '"+lookupCode(c.getSystem(), c.getCode())+"', stated as '"+c.getDisplay()+"')");
  } else
    x.span(null, "{"+c.getSystem()+" "+c.getCode()+"}").addText(s);
}
 
Example 27
Source Project: org.hl7.fhir.core   Source File: NarrativeGenerator.java    License: Apache License 2.0 5 votes vote down vote up
private String getCodingReference(Coding cc, String system) {
  if (cc.getSystem().equals(system))
    return "#"+cc.getCode();
  if (cc.getSystem().equals("http://snomed.info/sct"))
    return "http://snomed.info/sct/"+cc.getCode();
  if (cc.getSystem().equals("http://loinc.org"))
    return "http://s.details.loinc.org/LOINC/"+cc.getCode()+".html";
  return null;
}
 
Example 28
Source Project: org.hl7.fhir.core   Source File: NarrativeGenerator.java    License: Apache License 2.0 5 votes vote down vote up
public String genType(Type type) throws DefinitionException {
  if (type instanceof Coding)
    return gen((Coding) type);
  if (type instanceof CodeableConcept)
    return displayCodeableConcept((CodeableConcept) type);
  if (type instanceof Quantity)
    return displayQuantity((Quantity) type);
  if (type instanceof Range)
    return displayRange((Range) type);
  return null;
}
 
Example 29
Source Project: org.hl7.fhir.core   Source File: NarrativeGenerator.java    License: Apache License 2.0 5 votes vote down vote up
private String gen(Extension extension) throws DefinitionException {
if (extension.getValue() instanceof CodeType)
	return ((CodeType) extension.getValue()).getValue();
if (extension.getValue() instanceof Coding)
	return gen((Coding) extension.getValue());

 throw new DefinitionException("Unhandled type "+extension.getValue().getClass().getName());
}
 
Example 30
Source Project: org.hl7.fhir.core   Source File: NarrativeGenerator.java    License: Apache License 2.0 5 votes vote down vote up
public String gen(Coding code) {
 if (code == null)
 	return null;
 if (code.hasDisplayElement())
 	return code.getDisplay();
 if (code.hasCodeElement())
 	return code.getCode();
 return null;
}