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Project: Foundry
  • Foundry-master
    • build.xml
    • pom.xml
    • Components
      • LearningCore
        • build.xml
        • pom.xml
        • Test
          • gov
            • sandia
              • cognition
                • statistics
                  • RingTestHarness.java
                  • MultivariateDistributionTestHarness.java
                  • MultivariateClosedFormDistributionTestHarness.java
                  • UnivariateRandomVariableTest.java
                  • ClosedFormUnivariateDistributionTestHarness.java
                  • SufficientStatisticTestFramework.java
                  • ClosedFormDiscreteUnivariateDistributionTestHarness.java
                  • KullbackLeiblerDivergenceTest.java
                  • ClosedFormIntegerDistributionTestHarness.java
                  • MultivariateClosedFormComputableDiscreteDistributionTestHarness.java
                  • distribution
                    • StudentizedRangeDistributionTest.java
                    • MultivariateGaussianTest.java
                    • ScalarDataDistributionTest.java
                    • ChiSquareDistributionTest.java
                    • MapBasedPointMassDistributionTest.java
                    • UniformIntegerDistributionTest.java
                    • MixtureOfGaussiansTest.java
                    • KolmogorovDistributionTest.java
                    • GammaDistributionTest.java
                    • DataCountTreeSetBinnedMapHistogramTest.java
                    • DeterministicDistributionTest.java
                    • MapBasedDataHistogramTest.java
                    • MultivariateMixtureDensityModelTest.java
                    • BernoulliDistributionTest.java
                    • MultivariatePolyaDistributionTest.java
                    • NegativeBinomialDistributionTest.java
                    • ScalarMixtureDensityModelTest.java
                    • SnedecorFDistributionTest.java
                    • UnivariateGaussianTest.java
                    • PoissonDistributionTest.java
                    • LogisticDistributionTest.java
                    • NormalInverseGammaDistributionTest.java
                    • StudentTDistributionTest.java
                    • CauchyDistributionTest.java
                    • ExponentialDistributionTest.java
                    • BinomialDistributionTest.java
                    • BetaDistributionTest.java
                    • CategoricalDistributionTest.java
                    • MultinomialDistributionTest.java
                    • LaplaceDistributionTest.java
                    • InverseWishartDistributionTest.java
                    • NormalInverseWishartDistributionTest.java
                    • WeibullDistributionTest.java
                    • BetaBinomialDistributionTest.java
                    • InverseGammaDistributionTest.java
                    • GeometricDistributionTest.java
                    • YuleSimonDistributionTest.java
                    • DirichletDistributionTest.java
                    • LogNormalDistributionTest.java
                    • MultivariateGaussianInverseGammaDistributionTest.java
                    • MultivariateStudentTDistributionTest.java
                    • ParetoDistributionTest.java
                    • UniformDistributionTest.java
                    • ChineseRestaurantProcessTest.java
                  • ProbabilityMassFunctionUtilTest.java
                  • TransferEntropyTest.java
                  • SmoothUnivariateDistributionTestHarness.java
                  • montecarlo
                    • MultivariateMonteCarloIntegratorTest.java
                    • MultivariateCumulativeDistributionFunctionTest.java
                    • ImportanceSamplerTest.java
                    • MonteCarloSamplerTestHarness.java
                    • UnivariateMonteCarloIntegratorTest.java
                    • DirectSamplerTest.java
                  • DistributionParameterUtilTest.java
                  • MultivariateClosedFormComputableDistributionTestHarness.java
                  • DefaultDistributionParameterTest.java
                  • bayesian
                    • DirichletProcessMixtureModelTest.java
                    • SamplingImportanceResamplingParticleFilterTest.java
                    • BayesianRegressionTestHarness.java
                    • ExtendedKalmanFilterTest.java
                    • RecursiveBayesianEstimatorTestHarness.java
                    • AdaptiveRejectionSamplingTest.java
                    • BayesianCredibleIntervalTest.java
                    • NRCMCMCTest.java
                    • KalmanFilterTest.java
                    • MetropolisHastingsAlgorithmTest.java
                    • conjugate
                      • ExponentialBayesianEstimatorTest.java
                      • PoissonBayesianEstimatorTest.java
                      • MultinomialBayesianEstimatorTest.java
                      • ConjugatePriorBayesianEstimatorTestHarness.java
                      • UnivariateGaussianMeanBayesianEstimatorTest.java
                      • GammaInverseScaleBayesianEstimatorTest.java
                      • BinomialBayesianEstimatorTest.java
                      • UniformDistributionBayesianEstimatorTest.java
                      • MultivariateGaussianMeanCovarianceBayesianEstimatorTest.java
                      • MultivariateGaussianMeanBayesianEstimatorTest.java
                      • UnivariateGaussianMeanVarianceBayesianEstimatorTest.java
                      • BernoulliBayesianEstimatorTest.java
                    • ConditionalProbabilityTest.java
                    • DefaultBayesianParameterTest.java
                    • BayesianLinearRegressionTest.java
                    • ImportanceSamplingTest.java
                    • BayesianUtilTest.java
                    • ParallelDirichletProcessMixtureModelTest.java
                    • GaussianProcessRegressionTest.java
                    • RejectionSamplingTest.java
                    • BayesianRobustLinearRegressionTest.java
                  • method
                    • AbstractConfidenceStatisticTest.java
                    • ChiSquareConfidenceTest.java
                    • KolmogorovSmirnovConfidenceTest.java
                    • MannWhitneyUConfidenceTest.java
                    • InverseTransformSamplingTest.java
                    • ConvexReceiverOperatingCharacteristicTest.java
                    • BernoulliConfidenceTest.java
                    • WilcoxonSignedRankConfidenceTest.java
                    • SidakCorrectionTest.java
                    • ChebyshevInequalityTest.java
                    • BonferroniCorrectionTest.java
                    • FisherSignConfidenceTest.java
                    • HolmCorrectionTest.java
                    • ShafferStaticCorrectionTest.java
                    • MultipleComparisonExperimentTest.java
                    • MultipleHypothesisComparisonTestHarness.java
                    • GaussianConfidenceTest.java
                    • ImportanceSamplingTest.java
                    • ConfidenceIntervalTest.java
                    • FieldConfidenceIntervalTest.java
                    • AnalysisOfVarianceOneWayTest.java
                    • FriedmanConfidenceTest.java
                    • NemenyiConfidenceTest.java
                    • StudentTConfidenceTest.java
                    • TukeyKramerConfidenceTest.java
                    • DistributionParameterEstimatorTest.java
                    • ReceiverOperatingCharacteristicTest.java
                    • MaximumLikelihoodDistributionEstimatorTest.java
                    • TreeSetBinnerTest.java
                    • MarkovInequalityTest.java
                  • UnivariateDistributionTestHarness.java
                  • ChiSquaredSimilarityTest.java
                  • DiscreteSamplingUtilTest.java
                • learning
                  • function
                    • kernel
                      • ScalarFunctionKernelTest.java
                      • NormalizedKernelTest.java
                      • DefaultKernelsContainerTest.java
                      • WeightedKernelTest.java
                      • KernelDistanceMetricTest.java
                      • PolynomialKernelTest.java
                      • DefaultKernelContainerTest.java
                      • SumKernelTest.java
                      • KernelUtilTest.java
                      • RadialBasisKernelTest.java
                      • LinearKernelTest.java
                      • SigmoidKernelTest.java
                      • VectorFunctionKernelTest.java
                      • ExponentialKernelTest.java
                      • ZeroKernelTest.java
                      • ProductKernelTest.java
                    • cost
                      • MeanSquaredErrorCostFunctionTest.java
                      • ParallelizedCostFunctionContainerTest.java
                      • NegativeLogLikelihoodTest.java
                      • KolmogorovSmirnovDivergenceTest.java
                      • ParallelClusterDistortionMeasureTest.java
                      • ClusterDistortionMeasureTest.java
                      • ParallelNegativeLogLikelihoodTest.java
                      • MeanL1CostFunctionTest.java
                      • SupervisedCostFunctionTestHarness.java
                      • EuclideanDistanceCostFunctionTest.java
                      • SumSquaredErrorCostFunctionTest.java
                    • scalar
                      • VectorFunctionToScalarFunctionTest.java
                      • DifferentiableUnivariateScalarFunctionTestHarness.java
                      • LinearDiscriminantTest.java
                      • KolmogorovSmirnovEvaluatorTest.java
                      • IdentityScalarFunctionTest.java
                      • RectifiedLinearFunctionTest.java
                      • HardSigmoidFunctionTest.java
                      • PolynomialFunctionTest.java
                      • KernelScalarFunctionTest.java
                      • CosineFunctionTest.java
                      • LocallyWeightedKernelScalarFunctionTest.java
                      • VectorFunctionLinearDiscriminantTest.java
                      • HardTanHFunctionTest.java
                      • LinearCombinationScalarFunctionTest.java
                      • SigmoidFunctionTest.java
                      • SoftPlusFunctionTest.java
                      • TanHFunctionTest.java
                      • AtanFunctionTest.java
                      • LeakyRectifiedLinearFunctionTest.java
                      • ThresholdFunctionTest.java
                      • LinearFunctionTest.java
                      • LinearVectorScalarFunctionTest.java
                      • LinearDiscriminantWithBiasTest.java
                      • VectorEntryFunctionTest.java
                    • LinearCombinationFunctionTestHarness.java
                    • summarizer
                      • MostFrequentSummarizerTest.java
                    • categorization
                      • EvaluatorToCategorizerAdapterTest.java
                      • AbstractCategorizerTest.java
                      • CategorizerTestHarness.java
                      • VectorElementThresholdCategorizerTest.java
                      • FisherLinearDiscriminantBinaryCategorizerTest.java
                      • LinearBinaryCategorizerTest.java
                      • CompositeCategorizerTest.java
                      • LinearMultiCategorizerTest.java
                      • ThresholdBinaryCategorizerTestHarness.java
                      • ScalarThresholdBinaryCategorizerTest.java
                      • MaximumAPosterioriCategorizerTest.java
                      • WinnerTakeAllCategorizerTest.java
                      • ScalarFunctionToBinaryCategorizerAdapterTest.java
                      • BinaryVersusCategorizerTest.java
                      • AbstractBinaryCategorizerTest.java
                      • DefaultKernelBinaryCategorizerTest.java
                      • KernelBinaryCategorizerTest.java
                    • vector
                      • VectorizableVectorConverterWithBiasTest.java
                      • EntropyEvaluatorTest.java
                      • DifferentiableGeneralizedLinearModelTest.java
                      • DifferentiableFeedforwardNeuralNetworkTest.java
                      • ElementWiseVectorFunctionTest.java
                      • ElementWiseDifferentiableVectorFunctionTest.java
                      • SubVectorEvaluatorTest.java
                      • LinearVectorFunctionTest.java
                      • MultivariateDiscriminantWithBiasTest.java
                      • VectorizableVectorConverterTest.java
                      • LinearCombinationVectorFunctionTest.java
                      • GeneralizedLinearModelTest.java
                      • GaussianContextRecognizerTest.java
                      • ScalarBasisSetTest.java
                      • ThreeLayerFeedforwardNeuralNetworkTest.java
                      • MultivariateDiscriminantTest.java
                      • FeedforwardNeuralNetworkTest.java
                    • ConstantEvaluatorTest.java
                    • distance
                      • EuclideanDistanceSquaredMetricTest.java
                      • MetricTestHarness.java
                      • MinkowskiDistanceMetricTest.java
                      • EuclideanDistanceMetricTest.java
                      • IdentityDistanceMetricTest.java
                      • WeightedEuclideanDistanceMetricTest.java
                      • ChebyshevDistanceMetricTest.java
                      • DivergencesEvaluatorTest.java
                      • SemimetricTestHarness.java
                      • DefaultDivergenceFunctionContainerTest.java
                      • ManhattanDistanceMetricTest.java
                      • DivergenceFunctionTestHarness.java
                      • CosineDistanceMetricTest.java
                  • parameter
                    • ParameterAdaptableBatchLearnerWrapperTest.java
                  • test
                    • PropertyChecker.java
                  • data
                    • DefaultWeightedInputOutputPairTest.java
                    • DefaultWeightedValueDiscriminantTest.java
                    • DefaultValueDiscriminantPairTest.java
                    • DefaultTargetEstimatePairTest.java
                    • SequentialDataMultiPartitionerTest.java
                    • DatasetUtilTest.java
                    • feature
                      • DelayFunctionTest.java
                      • RandomSubspaceTest.java
                      • FeatureHashingTest.java
                      • MultivariateDecorrelatorTest.java
                      • LinearRegressionCoefficientExtractorTest.java
                      • StandardDistributionNormalizerTest.java
                    • RandomDataPartitionerTest.java
                    • DefaultPartitionedDatasetTest.java
                    • DefaultInputOutputPairTest.java
                  • experiment
                    • LearnerComparisonExperimentTest.java
                    • LearnerValidationExperimentTest.java
                    • RandomByTwoFoldCreatorTest.java
                    • LeaveOneOutFoldCreatorTest.java
                    • SupervisedLearnerComparisonExperimentTest.java
                    • SupervisedLearnerValidationExperimentTest.java
                    • OnlineLearnerValidationExperimentTest.java
                    • LearnerRepeatExperimentTest.java
                    • CrossFoldCreatorTest.java
                    • ParallelLearnerValidationExperimentTest.java
                    • RandomFoldCreatorTest.java
                  • algorithm
                    • ensemble
                      • MultiCategoryAdaBoostTest.java
                      • WeightedVotingCategorizerEnsembleTest.java
                      • WeightedAveragingEnsembleTest.java
                      • BaggingCategorizerLearnerTest.java
                      • AbstractBaggingLearnerTest.java
                      • BaggingRegressionLearnerTest.java
                      • BinaryBaggingLearnerTest.java
                      • VotingCategorizerEnsembleTest.java
                      • AbstractWeightedEnsembleTest.java
                      • CategoryBalancedIVotingLearnerTest.java
                      • WeightedAdditiveEnsembleTest.java
                      • WeightedBinaryEnsembleTest.java
                      • AdditiveEnsembleTest.java
                      • AbstractUnweightedEnsembleTest.java
                      • IVotingCategorizerLearnerTest.java
                      • CategoryBalancedBaggingLearnerTest.java
                      • AveragingEnsembleTest.java
                      • OnlineBaggingCategorizerLearnerTest.java
                      • BinaryCategorizerSelectorTest.java
                      • AdaBoostTest.java
                    • factor
                      • machine
                        • AbstractFactorizationMachineLearnerTest.java
                        • FactorizationMachineTest.java
                        • FactorizationMachineAlternatingLeastSquaresTest.java
                        • FactorizationMachineStochasticGradientTest.java
                    • confidence
                      • ConfidenceWeightedDiagonalVarianceTest.java
                      • ConfidenceWeightedDiagonalDeviationTest.java
                      • ConfidenceWeightedDiagonalDeviationProjectTest.java
                      • AdaptiveRegularizationOfWeightsTest.java
                      • ConfidenceWeightedDiagonalVarianceProjectTest.java
                    • AbstractBatchLearnerWrapperTest.java
                    • perceptron
                      • kernel
                        • OnlineKernelBinaryLearnerTestHarness.java
                        • ForgetronGreedyTest.java
                        • KernelPerceptronTest.java
                        • KernelAdatronTest.java
                        • ProjectronTest.java
                        • OnlineKernelRandomizedBudgetPerceptronTest.java
                        • OnlineKernelPerceptronTest.java
                        • StoptronTest.java
                        • AbstractOnlineBudgetedKernelBinaryCategorizerLearnerTest.java
                        • ForgetronTest.java
                        • ProjectronLinearSoftMarginTest.java
                        • RemoveOldestKernelPerceptronTest.java
                      • AggressiveRelaxedOnlineMaximumMarginAlgorithmTest.java
                      • OnlineShiftingPerceptronTest.java
                      • OnlinePassiveAggressivePerceptronTest.java
                      • OnlineBinaryMarginInfusedRelaxedAlgorithmTest.java
                      • OnlinePerceptronTest.java
                      • KernelizableBinaryCategorizerOnlineLearnerTestHarness.java
                      • WinnowTest.java
                      • RelaxedOnlineMaximumMarginAlgorithmTest.java
                      • OnlineVotedPerceptronTest.java
                      • OnlinePassiveAggressivePerceptronLinearSoftMarginTest.java
                      • PerceptronTest.java
                      • BallseptronTest.java
                      • BatchMultiPerceptronTest.java
                      • OnlineRampPassiveAggressivePerceptronTest.java
                      • OnlinePassiveAggressivePerceptronQuadraticSoftMarginTest.java
                    • AbstractAnytimeBatchLearnerTest.java
                    • genetic
                      • EvaluatedGenomeTest.java
                      • GeneticAlgorithmTest.java
                      • reproducer
                        • MutationReproducerTest.java
                        • DummyCrossoverFunction.java
                        • VectorizableCrossoverFunctionTest.java
                        • CrossoverReproducerTest.java
                        • MultiReproducerTest.java
                      • selector
                        • TournamentSelectorTest.java
                        • AbstractSelectorTest.java
                        • DummySelector.java
                      • ParallelizedGeneticAlgorithmTest.java
                      • DummyReproducer.java
                    • CompositeBatchLearnerPairTest.java
                    • bayes
                      • DiscreteNaiveBayesCategorizerTest.java
                      • VectorNaiveBayesCategorizerTest.java
                    • gradient
                      • GradientDescendableTestHarness.java
                      • GradientDescendableApproximatorTest.java
                    • minimization
                      • FunctionMinimizerBFGSTest.java
                      • FunctionMinimizerGradientDescentTest.java
                      • FunctionMinimizerTestHarness.java
                      • line
                        • DirectionalVectorToScalarFunctionTest.java
                        • LineMinimizerDerivativeBasedTest.java
                        • InputOutputSlopeTripletTest.java
                        • LineBracketTest.java
                        • LineMinimizerBacktrackingTest.java
                        • LineMinimizerDerivativeFreeTest.java
                        • LineMinimizerTestHarness.java
                        • WolfeConditionsTest.java
                        • DirectionalVectorToDifferentiableScalarFunctionTest.java
                        • interpolator
                          • LineBracketInterpolatorBrentTest.java
                          • LineBracketInterpolatorGoldenSectionTest.java
                          • LineBracketInterpolatorHermiteCubicTest.java
                          • LineBracketInterpolatorTestHarness.java
                          • LineBracketInterpolatorHermiteParabolaTest.java
                          • LineBracketInterpolatorLinearTest.java
                          • LineBracketInterpolatorParabolaTest.java
                      • FunctionMinimizerNelderMeadTest.java
                      • FunctionMinimizerFletcherReevesTest.java
                      • FunctionMinimizerPolakRibiereTest.java
                      • FunctionMinimizerDFPTest.java
                      • matrix
                        • IterativeMatrixSolversTest.java
                      • FunctionMinimizerLiuStoreyTest.java
                      • FunctionMinimizerDirectionSetPowellTest.java
                    • SequencePredictionLearnerTest.java
                    • clustering
                      • AgglomerativeClustererTest.java
                      • DirichletProcessClusteringTest.java
                      • divergence
                        • GaussianClusterDivergenceFunctionTest.java
                        • ClusterCompleteLinkDivergenceFunctionTest.java
                        • ClusterMeanLinkDivergenceFunctionTest.java
                        • ClusterCentroidDivergenceFunctionTest.java
                        • ClusterSingleLinkDivergenceFunctionTest.java
                        • CentroidClusterDivergenceFunctionTest.java
                      • ParallelizedKMeansClustererTest.java
                      • PartitionalClustererTest.java
                      • AffinityPropagationTest.java
                      • KMeansClustererTest.java
                      • KMeansFactoryTest.java
                      • KMeansClustererWithRemovalTest.java
                      • hierarchy
                        • BinaryClusterHierarchyNodeTest.java
                        • DefaultClusterHierarchyNodeTest.java
                      • MiniBatchKMeansClustererTest.java
                      • OptimizedKMeansClustererTest.java
                      • cluster
                        • CentroidClusterTest.java
                        • DefaultClusterTest.java
                        • DefaultClusterCreatorTest.java
                        • DefaultIncrementalClusterCreatorTest.java
                        • MedoidClusterCreatorTest.java
                        • VectorMeanCentroidClusterCreatorTest.java
                        • GaussianClusterTest.java
                      • initializer
                        • DistanceSamplingClusterInitializerTest.java
                        • GreedyClusterInitializerTest.java
                        • NeighborhoodGaussianClusterInitializerTest.java
                      • DBSCANClustererTest.java
                    • DummyIterativeLearnerListener.java
                    • SupervisedLearnerTestHarness.java
                    • svm
                      • SequentialMinimalOptimizationTest.java
                      • SimplifiedSequentialMinimalOptimization.java
                      • SimplifiedSequentialMinimalOptimizationTest.java
                      • SuccessiveOverrelaxationTest.java
                      • PrimalEstimatedSubGradientTest.java
                    • tree
                      • RandomSubVectorThresholdLearnerTest.java
                      • RegressionTreeLearnerTest.java
                      • CategorizationTreeNodeTest.java
                      • VectorThresholdGiniImpurityLearnerTest.java
                      • VectorThresholdHellingerDistanceLearnerTest.java
                      • VectorThresholdVarianceLearnerTest.java
                      • RandomForestFactoryTest.java
                      • RegressionTreeTest.java
                      • DecisionTreeTest.java
                      • VectorThresholdInformationGainLearnerTest.java
                      • RegressionTreeNodeTest.java
                      • CategorizationTreeTest.java
                      • CategorizationTreeLearnerTest.java
                    • regression
                      • LinearRegressionTest.java
                      • LevenbergMarquardtEstimationTest.java
                      • KernelBasedIterativeRegressionTest.java
                      • LogisticRegressionTest.java
                      • MultivariateLinearRegressionTest.java
                      • FletcherXuHybridEstimationTest.java
                      • ParameterDifferentiableCostMinimizerTest.java
                      • GaussNewtonAlgorithmTest.java
                      • MinimizerBasedParameterCostMinimizerTestHarness.java
                      • UnivariateLinearRegressionTest.java
                      • LocallyWeightedFunctionTest.java
                      • ParameterDerivativeFreeCostMinimizerTest.java
                      • KernelWeightedRobustRegressionTest.java
                    • baseline
                      • MostFrequentLearnerTest.java
                      • WeightedMeanLearnerTest.java
                      • ConstantLearnerTest.java
                      • WeightedMostFrequentLearnerTest.java
                      • MeanLearnerTest.java
                      • IdentityLearnerTest.java
                    • hmm
                      • BaumWelchAlgorithmTest.java
                      • ParallelBaumWelchAlgorithmTest.java
                      • ParallelHiddenMarkovModelTest.java
                      • HiddenMarkovModelTest.java
                      • MarkovChainTest.java
                    • root
                      • RootFinderBisectionMethodTest.java
                      • RootFinderNewtonsMethodTest.java
                      • SolverFunctionTest.java
                      • RootBracketExpanderTest.java
                      • RootFinderSecantMethodTest.java
                      • RootFinderRiddersMethodTest.java
                      • RootFinderFalsePositionMethodTest.java
                      • RootFinderTestHarness.java
                      • MinimizerBasedRootFinderTest.java
                    • pca
                      • KernelPrincipalComponentsAnalysisTest.java
                      • PrincipalComponentsAnalysisFunctionTest.java
                      • GeneralizedHebbianAlgorithmTest.java
                      • ThinSingularValueDecompositionTest.java
                      • PrincipalComponentsAnalysisTestHarness.java
                    • annealing
                      • SimulatedAnnealerTest.java
                      • VectorizablePerturberTest.java
                      • DummyPerturber.java
                    • InputOutputTransformedBatchLearnerTest.java
                    • nearest
                      • KNearestNeighborTestHarness.java
                      • NearestNeighborKDTreeTest.java
                      • KNearestNeighborKDTreeTest.java
                      • NearestNeighborExhaustiveTest.java
                      • NearestNeighborTestHarness.java
                      • KNearestNeighborExhaustiveTest.java
                    • semisupervised
                      • valence
                        • MultipartiteValenceMatrixTest.java
                    • TimeSeriesPredictionLearnerTest.java
                  • performance
                    • MeanSquaredErrorEvaluatorTest.java
                    • categorization
                      • ConfusionMatrixPerformanceEvaluatorTest.java
                      • AbstractBinaryConfusionMatrixTest.java
                      • DefaultBinaryConfusionMatrixConfidenceIntervalTest.java
                      • DefaultConfusionMatrixTest.java
                      • AbstractConfusionMatrixTest.java
                      • DefaultBinaryConfusionMatrixTest.java
                    • RootMeanSquaredErrorEvaluatorTest.java
                    • MeanAbsoluteErrorEvaluatorTest.java
                    • MeanZeroOneErrorEvaluatorTest.java
                    • AnytimeBatchLearnerValidationPerformanceReporterTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • gov
            • sandia
              • cognition
                • statistics
                  • DistributionWeightedEstimator.java
                  • ProbabilityDensityFunction.java
                  • DiscreteDistribution.java
                  • InvertibleCumulativeDistributionFunction.java
                  • DiscreteSamplingUtil.java
                  • ProbabilityMassFunction.java
                  • ChiSquaredSimilarity.java
                  • AbstractClosedFormSmoothUnivariateDistribution.java
                  • ClosedFormComputableDiscreteDistribution.java
                  • EstimableWeightedDistribution.java
                  • DistributionParameter.java
                  • AbstractSufficientStatistic.java
                  • KullbackLeiblerDivergence.java
                  • ClosedFormCumulativeDistributionFunction.java
                  • IncrementalEstimator.java
                  • SmoothUnivariateDistribution.java
                  • SufficientStatistic.java
                  • AbstractClosedFormIntegerDistribution.java
                  • EstimableDistribution.java
                  • ClosedFormComputableDistribution.java
                  • DistributionParameterUtil.java
                  • AbstractIncrementalEstimator.java
                  • AbstractDataDistribution.java
                  • UnivariateProbabilityDensityFunction.java
                  • distribution
                    • ParetoDistribution.java
                    • BetaDistribution.java
                    • DefaultDataDistribution.java
                    • ChineseRestaurantProcess.java
                    • ChiSquareDistribution.java
                    • BetaBinomialDistribution.java
                    • BinomialDistribution.java
                    • DirichletDistribution.java
                    • MultivariateGaussianInverseGammaDistribution.java
                    • StudentizedRangeDistribution.java
                    • StudentTDistribution.java
                    • CauchyDistribution.java
                    • InverseWishartDistribution.java
                    • UniformIntegerDistribution.java
                    • MultinomialDistribution.java
                    • NegativeBinomialDistribution.java
                    • UniformDistribution.java
                    • ExponentialDistribution.java
                    • PoissonDistribution.java
                    • DataCountTreeSetBinnedMapHistogram.java
                    • WeibullDistribution.java
                    • MixtureOfGaussians.java
                    • ScalarMixtureDensityModel.java
                    • MultivariateStudentTDistribution.java
                    • YuleSimonDistribution.java
                    • NormalInverseGammaDistribution.java
                    • BernoulliDistribution.java
                    • package-info.java
                    • ScalarDataDistribution.java
                    • MultivariateGaussian.java
                    • DeterministicDistribution.java
                    • LogNormalDistribution.java
                    • CategoricalDistribution.java
                    • KolmogorovDistribution.java
                    • MultivariateMixtureDensityModel.java
                    • SnedecorFDistribution.java
                    • MultivariatePolyaDistribution.java
                    • GeometricDistribution.java
                    • LaplaceDistribution.java
                    • GammaDistribution.java
                    • InverseGammaDistribution.java
                    • NormalInverseWishartDistribution.java
                    • LinearMixtureModel.java
                    • LogisticDistribution.java
                    • UnivariateGaussian.java
                  • package-info.java
                  • AbstractRandomVariable.java
                  • UnivariateDistribution.java
                  • ProbabilityFunction.java
                  • DefaultDistributionParameter.java
                  • DistributionEstimator.java
                  • ClosedFormDistribution.java
                  • ProbabilityMassFunctionUtil.java
                  • montecarlo
                    • DirectSampler.java
                    • MultivariateMonteCarloIntegrator.java
                    • MonteCarloSampler.java
                    • ImportanceSampler.java
                    • package-info.java
                    • MultivariateCumulativeDistributionFunction.java
                    • MonteCarloIntegrator.java
                    • UnivariateMonteCarloIntegrator.java
                  • DataDistribution.java
                  • ClosedFormUnivariateDistribution.java
                  • AbstractClosedFormUnivariateDistribution.java
                  • AbstractDistribution.java
                  • Distribution.java
                  • CumulativeDistributionFunction.java
                  • IntegerDistribution.java
                  • UnivariateRandomVariable.java
                  • DistributionWithMean.java
                  • RandomVariable.java
                  • TransferEntropy.java
                  • bayesian
                    • ImportanceSampling.java
                    • MetropolisHastingsAlgorithm.java
                    • AdaptiveRejectionSampling.java
                    • RejectionSampling.java
                    • DirichletProcessMixtureModel.java
                    • BayesianParameter.java
                    • AbstractParticleFilter.java
                    • DefaultBayesianParameter.java
                    • BayesianEstimatorPredictor.java
                    • BayesianRobustLinearRegression.java
                    • conjugate
                      • BinomialBayesianEstimator.java
                      • AbstractConjugatePriorBayesianEstimator.java
                      • MultinomialBayesianEstimator.java
                      • UnivariateGaussianMeanBayesianEstimator.java
                      • ConjugatePriorBayesianEstimator.java
                      • MultivariateGaussianMeanBayesianEstimator.java
                      • UnivariateGaussianMeanVarianceBayesianEstimator.java
                      • package-info.java
                      • UniformDistributionBayesianEstimator.java
                      • ExponentialBayesianEstimator.java
                      • MultivariateGaussianMeanCovarianceBayesianEstimator.java
                      • BernoulliBayesianEstimator.java
                      • PoissonBayesianEstimator.java
                      • GammaInverseScaleBayesianEstimator.java
                      • ConjugatePriorBayesianEstimatorPredictor.java
                    • AbstractBayesianParameter.java
                    • ParallelDirichletProcessMixtureModel.java
                    • BayesianUtil.java
                    • AbstractMarkovChainMonteCarlo.java
                    • KalmanFilter.java
                    • GaussianProcessRegression.java
                    • RecursiveBayesianEstimator.java
                    • package-info.java
                    • SamplingImportanceResamplingParticleFilter.java
                    • MarkovChainMonteCarlo.java
                    • BayesianCredibleInterval.java
                    • AbstractKalmanFilter.java
                    • BayesianLinearRegression.java
                    • ConditionalProbability.java
                    • ParticleFilter.java
                    • BayesianEstimator.java
                    • BayesianRegression.java
                    • ExtendedKalmanFilter.java
                  • ComputableDistribution.java
                  • method
                    • ImportanceSampling.java
                    • AbstractConfidenceStatistic.java
                    • ConfidenceStatistic.java
                    • BonferroniCorrection.java
                    • StudentTConfidence.java
                    • AbstractMultipleHypothesisComparison.java
                    • ConvexReceiverOperatingCharacteristic.java
                    • GaussianConfidence.java
                    • ConfidenceIntervalEvaluator.java
                    • NullHypothesisEvaluator.java
                    • SidakCorrection.java
                    • TreeSetBinner.java
                    • ChiSquareConfidence.java
                    • NemenyiConfidence.java
                    • FieldConfidenceInterval.java
                    • FriedmanConfidence.java
                    • ConfidenceInterval.java
                    • MaximumLikelihoodDistributionEstimator.java
                    • InverseTransformSampling.java
                    • ConfidenceTestAssumptions.java
                    • BlockExperimentComparison.java
                    • package-info.java
                    • HolmCorrection.java
                    • AdjustedPValueStatistic.java
                    • FisherSignConfidence.java
                    • KolmogorovSmirnovConfidence.java
                    • WilcoxonSignedRankConfidence.java
                    • AbstractPairwiseMultipleHypothesisComparison.java
                    • DistributionParameterEstimator.java
                    • MultipleHypothesisComparison.java
                    • BernoulliConfidence.java
                    • AnalysisOfVarianceOneWay.java
                    • TukeyKramerConfidence.java
                    • MarkovInequality.java
                    • MannWhitneyUConfidence.java
                    • Binner.java
                    • MultipleComparisonExperiment.java
                    • ReceiverOperatingCharacteristic.java
                    • ChebyshevInequality.java
                    • ShafferStaticCorrection.java
                  • SmoothCumulativeDistributionFunction.java
                  • ClosedFormDiscreteUnivariateDistribution.java
                • learning
                  • function
                    • kernel
                      • SigmoidKernel.java
                      • VectorFunctionKernel.java
                      • Kernel.java
                      • RadialBasisKernel.java
                      • KernelDistanceMetric.java
                      • WeightedKernel.java
                      • PolynomialKernel.java
                      • KernelUtil.java
                      • ProductKernel.java
                      • package-info.java
                      • ZeroKernel.java
                      • ExponentialKernel.java
                      • SumKernel.java
                      • DefaultKernelContainer.java
                      • KernelContainer.java
                      • LinearKernel.java
                      • DefaultKernelsContainer.java
                      • NormalizedKernel.java
                      • ScalarFunctionKernel.java
                    • LinearCombinationFunction.java
                    • cost
                      • KolmogorovSmirnovDivergence.java
                      • ParallelizedCostFunctionContainer.java
                      • AbstractSupervisedCostFunction.java
                      • EuclideanDistanceCostFunction.java
                      • ParallelClusterDistortionMeasure.java
                      • package-info.java
                      • NegativeLogLikelihood.java
                      • AbstractCostFunction.java
                      • MeanSquaredErrorCostFunction.java
                      • CostFunction.java
                      • SumSquaredErrorCostFunction.java
                      • ParallelizableCostFunction.java
                      • SupervisedCostFunction.java
                      • ParallelNegativeLogLikelihood.java
                      • AbstractParallelizableCostFunction.java
                      • DifferentiableCostFunction.java
                      • ClusterDistortionMeasure.java
                      • MeanL1CostFunction.java
                    • scalar
                      • LinearFunction.java
                      • KolmogorovSmirnovEvaluator.java
                      • TanHFunction.java
                      • LeakyRectifiedLinearFunction.java
                      • RectifiedLinearFunction.java
                      • VectorFunctionToScalarFunction.java
                      • LocallyWeightedKernelScalarFunction.java
                      • SigmoidFunction.java
                      • LinearDiscriminantWithBias.java
                      • HardTanHFunction.java
                      • AtanFunction.java
                      • VectorFunctionLinearDiscriminant.java
                      • KernelScalarFunction.java
                      • CosineFunction.java
                      • VectorEntryFunction.java
                      • package-info.java
                      • PolynomialFunction.java
                      • LinearDiscriminant.java
                      • HardSigmoidFunction.java
                      • LinearCombinationScalarFunction.java
                      • ThresholdFunction.java
                      • SoftPlusFunction.java
                      • IdentityScalarFunction.java
                      • LinearVectorScalarFunction.java
                    • package-info.java
                    • summarizer
                      • package-info.java
                      • MostFrequentSummarizer.java
                    • categorization
                      • LinearMultiCategorizer.java
                      • AbstractCategorizer.java
                      • AbstractDiscriminantBinaryCategorizer.java
                      • MaximumAPosterioriCategorizer.java
                      • DiscriminantBinaryCategorizer.java
                      • DiscriminantCategorizer.java
                      • ConfidenceWeightedBinaryCategorizer.java
                      • KernelBinaryCategorizer.java
                      • LinearBinaryCategorizer.java
                      • EvaluatorToCategorizerAdapter.java
                      • ScalarThresholdBinaryCategorizer.java
                      • BinaryCategorizer.java
                      • AbstractBinaryCategorizer.java
                      • Categorizer.java
                      • WinnerTakeAllCategorizer.java
                      • ThresholdBinaryCategorizer.java
                      • BinaryVersusCategorizer.java
                      • package-info.java
                      • DefaultKernelBinaryCategorizer.java
                      • CompositeCategorizer.java
                      • AbstractConfidenceWeightedBinaryCategorizer.java
                      • VectorElementThresholdCategorizer.java
                      • DiagonalConfidenceWeightedBinaryCategorizer.java
                      • FisherLinearDiscriminantBinaryCategorizer.java
                      • AbstractDiscriminantCategorizer.java
                      • AbstractThresholdBinaryCategorizer.java
                      • ScalarFunctionToBinaryCategorizerAdapter.java
                      • DefaultConfidenceWeightedBinaryCategorizer.java
                    • vector
                      • GeneralizedLinearModel.java
                      • ScalarBasisSet.java
                      • VectorizableVectorConverterWithBias.java
                      • GaussianContextRecognizer.java
                      • LinearCombinationVectorFunction.java
                      • ElementWiseDifferentiableVectorFunction.java
                      • MultivariateDiscriminantWithBias.java
                      • SubVectorEvaluator.java
                      • DifferentiableFeedforwardNeuralNetwork.java
                      • FeedforwardNeuralNetwork.java
                      • EntropyEvaluator.java
                      • package-info.java
                      • VectorizableVectorConverter.java
                      • MultivariateDiscriminant.java
                      • DifferentiableGeneralizedLinearModel.java
                      • ThreeLayerFeedforwardNeuralNetwork.java
                      • ElementWiseVectorFunction.java
                      • LinearVectorFunction.java
                    • regression
                      • Regressor.java
                      • AbstractRegressor.java
                      • package-info.java
                    • distance
                      • MinkowskiDistanceMetric.java
                      • EuclideanDistanceMetric.java
                      • WeightedEuclideanDistanceMetric.java
                      • IdentityDistanceMetric.java
                      • ManhattanDistanceMetric.java
                      • ChebyshevDistanceMetric.java
                      • package-info.java
                      • DivergenceFunctionContainer.java
                      • DefaultDivergenceFunctionContainer.java
                      • EuclideanDistanceSquaredMetric.java
                      • CosineDistanceMetric.java
                      • DivergencesEvaluator.java
                    • ConstantEvaluator.java
                  • parameter
                    • ParameterAdaptableBatchLearnerWrapper.java
                    • ParameterAdapter.java
                    • ParameterAdaptable.java
                    • package-info.java
                  • data
                    • AbstractTargetEstimatePair.java
                    • RandomizedDataPartitioner.java
                    • WeightedInputOutputPair.java
                    • AbstractValueDiscriminantPair.java
                    • RandomDataPartitioner.java
                    • DefaultValueDiscriminantPair.java
                    • WeightedTargetEstimatePair.java
                    • InputOutputPair.java
                    • DefaultTargetEstimatePair.java
                    • DefaultWeightedTargetEstimatePair.java
                    • TargetEstimatePair.java
                    • DefaultPartitionedDataset.java
                    • DefaultWeightedValueDiscriminant.java
                    • SequentialDataMultiPartitioner.java
                    • package-info.java
                    • ValueDiscriminantPair.java
                    • DefaultInputOutputPair.java
                    • feature
                      • LinearRegressionCoefficientExtractor.java
                      • FeatureHashing.java
                      • MultivariateDecorrelator.java
                      • package-info.java
                      • DelayFunction.java
                      • RandomSubspace.java
                      • StandardDistributionNormalizer.java
                    • PartitionedDataset.java
                    • DataPartitioner.java
                    • AbstractInputOutputPair.java
                    • DatasetUtil.java
                    • DefaultWeightedInputOutputPair.java
                  • experiment
                    • AbstractLearningExperiment.java
                    • RandomFoldCreator.java
                    • SupervisedLearnerValidationExperiment.java
                    • LearningExperimentListener.java
                    • LearnerRepeatExperiment.java
                    • AbstractValidationFoldExperiment.java
                    • ValidationFoldCreator.java
                    • SupervisedLearnerComparisonExperiment.java
                    • RandomByTwoFoldCreator.java
                    • CrossFoldCreator.java
                    • package-info.java
                    • LeaveOneOutFoldCreator.java
                    • ParallelLearnerValidationExperiment.java
                    • LearnerValidationExperiment.java
                    • LearnerComparisonExperiment.java
                    • LearningExperiment.java
                    • OnlineLearnerValidationExperiment.java
                  • algorithm
                    • ensemble
                      • AveragingEnsemble.java
                      • Ensemble.java
                      • BaggingCategorizerLearner.java
                      • WeightedAdditiveEnsemble.java
                      • BinaryBaggingLearner.java
                      • AdditiveEnsemble.java
                      • CategoryBalancedBaggingLearner.java
                      • MultiCategoryAdaBoost.java
                      • VotingCategorizerEnsemble.java
                      • package-info.java
                      • BaggingRegressionLearner.java
                      • BagBasedCategorizerEnsembleLearner.java
                      • AbstractUnweightedEnsemble.java
                      • CategoryBalancedIVotingLearner.java
                      • WeightedAveragingEnsemble.java
                      • AdaBoost.java
                      • WeightedBinaryEnsemble.java
                      • IVotingCategorizerLearner.java
                      • AbstractWeightedEnsemble.java
                      • AbstractCategorizerOutOfBagStoppingCriteria.java
                      • AbstractBaggingLearner.java
                      • BinaryCategorizerSelector.java
                      • WeightedVotingCategorizerEnsemble.java
                      • OnlineBaggingCategorizerLearner.java
                    • factor
                      • machine
                        • FactorizationMachineAlternatingLeastSquares.java
                        • FactorizationMachineStochasticGradient.java
                        • package-info.java
                        • FactorizationMachine.java
                        • AbstractFactorizationMachineLearner.java
                    • confidence
                      • ConfidenceWeightedDiagonalVariance.java
                      • AdaptiveRegularizationOfWeights.java
                      • ConfidenceWeightedDiagonalDeviationProject.java
                      • ConfidenceWeightedDiagonalVarianceProject.java
                      • package-info.java
                      • ConfidenceWeightedDiagonalDeviation.java
                    • IncrementalLearner.java
                    • perceptron
                      • kernel
                        • BudgetedKernelBinaryCategorizerLearner.java
                        • OnlineKernelRandomizedBudgetPerceptron.java
                        • Projectron.java
                        • KernelPerceptron.java
                        • OnlineKernelPerceptron.java
                        • Stoptron.java
                        • Forgetron.java
                        • AbstractOnlineKernelBinaryCategorizerLearner.java
                        • KernelAdatron.java
                        • AbstractOnlineBudgetedKernelBinaryCategorizerLearner.java
                        • KernelBinaryCategorizerOnlineLearnerAdapter.java
                        • RemoveOldestKernelPerceptron.java
                      • OnlineMultiPerceptron.java
                      • LinearizableBinaryCategorizerOnlineLearner.java
                      • Perceptron.java
                      • Ballseptron.java
                      • AggressiveRelaxedOnlineMaximumMarginAlgorithm.java
                      • RelaxedOnlineMaximumMarginAlgorithm.java
                      • OnlineRampPassiveAggressivePerceptron.java
                      • AbstractLinearCombinationOnlineLearner.java
                      • AbstractOnlineLinearBinaryCategorizerLearner.java
                      • OnlinePassiveAggressivePerceptron.java
                      • package-info.java
                      • OnlineShiftingPerceptron.java
                      • AbstractKernelizableBinaryCategorizerOnlineLearner.java
                      • KernelizableBinaryCategorizerOnlineLearner.java
                      • OnlineBinaryMarginInfusedRelaxedAlgorithm.java
                      • BatchMultiPerceptron.java
                      • OnlinePerceptron.java
                      • Winnow.java
                      • OnlineVotedPerceptron.java
                    • BatchAndIncrementalLearner.java
                    • BatchLearner.java
                    • BatchLearnerContainer.java
                    • TimeSeriesPredictionLearner.java
                    • SequencePredictionLearner.java
                    • DimensionFilterableLearner.java
                    • AbstractBatchLearnerContainer.java
                    • genetic
                      • ParallelizedGeneticAlgorithm.java
                      • EvaluatedGenome.java
                      • reproducer
                        • Reproducer.java
                        • CrossoverReproducer.java
                        • CrossoverFunction.java
                        • package-info.java
                        • MultiReproducer.java
                        • VectorizableCrossoverFunction.java
                        • MutationReproducer.java
                      • selector
                        • TournamentSelector.java
                        • package-info.java
                        • Selector.java
                        • AbstractSelector.java
                      • package-info.java
                      • GeneticAlgorithm.java
                    • InputOutputTransformedBatchLearner.java
                    • AnytimeBatchLearner.java
                    • bayes
                      • DiscreteNaiveBayesCategorizer.java
                      • VectorNaiveBayesCategorizer.java
                      • package-info.java
                    • gradient
                      • GradientDescendable.java
                      • package-info.java
                      • ParameterGradientEvaluator.java
                      • GradientDescendableApproximator.java
                    • minimization
                      • FunctionMinimizerDirectionSetPowell.java
                      • FunctionMinimizerDFP.java
                      • FunctionMinimizerLiuStorey.java
                      • line
                        • DirectionalVectorToScalarFunction.java
                        • LineMinimizer.java
                        • InputOutputSlopeTriplet.java
                        • AbstractAnytimeLineMinimizer.java
                        • LineMinimizerBacktracking.java
                        • package-info.java
                        • LineMinimizerDerivativeBased.java
                        • DirectionalVectorToDifferentiableScalarFunction.java
                        • LineBracket.java
                        • WolfeConditions.java
                        • LineMinimizerDerivativeFree.java
                        • interpolator
                          • LineBracketInterpolatorHermiteParabola.java
                          • LineBracketInterpolatorBrent.java
                          • LineBracketInterpolatorGoldenSection.java
                          • LineBracketInterpolatorParabola.java
                          • LineBracketInterpolatorHermiteCubic.java
                          • LineBracketInterpolatorLinear.java
                          • LineBracketInterpolator.java
                          • package-info.java
                          • AbstractLineBracketInterpolatorPolynomial.java
                          • AbstractLineBracketInterpolator.java
                      • FunctionMinimizerConjugateGradient.java
                      • FunctionMinimizerGradientDescent.java
                      • FunctionMinimizer.java
                      • FunctionMinimizerQuasiNewton.java
                      • MinimizationStoppingCriterion.java
                      • package-info.java
                      • FunctionMinimizerBFGS.java
                      • AbstractAnytimeFunctionMinimizer.java
                      • FunctionMinimizerNelderMead.java
                      • FunctionMinimizerPolakRibiere.java
                      • matrix
                        • OverconstrainedMatrixVectorMultiplier.java
                        • MatrixVectorMultiplier.java
                        • SteepestDescentMatrixSolver.java
                        • MatrixVectorMultiplierDiagonalPreconditioner.java
                        • ConjugateGradientWithPreconditionerMatrixSolver.java
                        • package-info.java
                        • MatrixVectorMultiplierWithPreconditioner.java
                        • OverconstrainedConjugateGradientMatrixMinimizer.java
                        • ConjugateGradientMatrixSolver.java
                        • IterativeMatrixSolver.java
                      • FunctionMinimizerFletcherReeves.java
                    • SupervisedIncrementalLearner.java
                    • clustering
                      • MiniBatchKMeansClusterer.java
                      • BatchClusterer.java
                      • DBSCANClusterer.java
                      • OptimizedKMeansClusterer.java
                      • AgglomerativeClusterer.java
                      • ParallelizedKMeansClusterer.java
                      • divergence
                        • WithinClusterDivergenceWrapper.java
                        • ClusterMeanLinkDivergenceFunction.java
                        • ClusterSingleLinkDivergenceFunction.java
                        • AbstractClusterToClusterDivergenceFunction.java
                        • WithinClusterDivergence.java
                        • GaussianClusterDivergenceFunction.java
                        • ClusterDivergenceFunction.java
                        • CentroidClusterDivergenceFunction.java
                        • package-info.java
                        • WithinNormalizedCentroidClusterCosineDivergence.java
                        • ClusterToClusterDivergenceFunction.java
                        • ClusterCompleteLinkDivergenceFunction.java
                        • ClusterCentroidDivergenceFunction.java
                      • DirichletProcessClustering.java
                      • KMeansFactory.java
                      • package-info.java
                      • PartitionalClusterer.java
                      • KMeansClustererWithRemoval.java
                      • hierarchy
                        • AbstractClusterHierarchyNode.java
                        • BinaryClusterHierarchyNode.java
                        • BatchHierarchicalClusterer.java
                        • DefaultClusterHierarchyNode.java
                        • package-info.java
                        • ClusterHierarchyNode.java
                      • AffinityPropagation.java
                      • KMeansClusterer.java
                      • cluster
                        • VectorMeanCentroidClusterCreator.java
                        • GaussianClusterCreator.java
                        • VectorMeanMiniBatchCentroidClusterCreator.java
                        • DefaultIncrementalClusterCreator.java
                        • GaussianCluster.java
                        • MiniBatchCentroidCluster.java
                        • IncrementalClusterCreator.java
                        • ClusterCreator.java
                        • DefaultClusterCreator.java
                        • CentroidCluster.java
                        • MedoidClusterCreator.java
                        • DefaultCluster.java
                        • package-info.java
                        • NormalizedCentroidClusterCreator.java
                        • Cluster.java
                        • NormalizedCentroidCluster.java
                      • initializer
                        • RandomClusterInitializer.java
                        • GreedyClusterInitializer.java
                        • DistanceSamplingClusterInitializer.java
                        • package-info.java
                        • AbstractMinDistanceFixedClusterInitializer.java
                        • FixedClusterInitializer.java
                        • NeighborhoodGaussianClusterInitializer.java
                    • SupervisedBatchLearner.java
                    • delta
                      • package-info.java
                      • CosineDeltaCategorizer.java
                      • AbstractDeltaCategorizer.java
                      • BurrowsDeltaCategorizer.java
                    • package-info.java
                    • AbstractSupervisedBatchAndIncrementalLearner.java
                    • svm
                      • PrimalEstimatedSubGradient.java
                      • SequentialMinimalOptimization.java
                      • package-info.java
                      • SuccessiveOverrelaxation.java
                    • AbstractAnytimeBatchLearner.java
                    • BatchCostMinimizationLearner.java
                    • tree
                      • CategorizationTreeNode.java
                      • VectorThresholdLearner.java
                      • VectorThresholdGiniImpurityLearner.java
                      • DecisionTree.java
                      • RegressionTreeNode.java
                      • VectorThresholdHellingerDistanceLearner.java
                      • RegressionTreeLearner.java
                      • AbstractVectorThresholdMaximumGainLearner.java
                      • DecisionTreeNode.java
                      • package-info.java
                      • AbstractDecisionTreeNode.java
                      • RandomSubVectorThresholdLearner.java
                      • CategorizationTree.java
                      • DeciderLearner.java
                      • RegressionTree.java
                      • VectorThresholdVarianceLearner.java
                      • VectorThresholdInformationGainLearner.java
                      • PriorWeightedNodeLearner.java
                      • RandomForestFactory.java
                      • AbstractDecisionTreeLearner.java
                      • CategorizationTreeLearner.java
                    • regression
                      • UnivariateLinearRegression.java
                      • LinearRegression.java
                      • UnivariateRegression.java
                      • AbstractParameterCostMinimizer.java
                      • LeastSquaresEstimator.java
                      • ParameterDerivativeFreeCostMinimizer.java
                      • MultivariateLinearRegression.java
                      • LevenbergMarquardtEstimation.java
                      • ParameterCostMinimizer.java
                      • LocallyWeightedFunction.java
                      • Regression.java
                      • KernelBasedIterativeRegression.java
                      • ParameterDifferentiableCostMinimizer.java
                      • GaussNewtonAlgorithm.java
                      • MultivariateRegression.java
                      • package-info.java
                      • KernelWeightedRobustRegression.java
                      • AbstractMinimizerBasedParameterCostMinimizer.java
                      • FletcherXuHybridEstimation.java
                      • LogisticRegression.java
                      • LinearBasisRegression.java
                      • AbstractLogisticRegression.java
                    • baseline
                      • WeightedMeanLearner.java
                      • MeanLearner.java
                      • WeightedMostFrequentLearner.java
                      • IdentityLearner.java
                      • package-info.java
                      • ConstantLearner.java
                      • MostFrequentLearner.java
                    • hmm
                      • AbstractBaumWelchAlgorithm.java
                      • BaumWelchAlgorithm.java
                      • HiddenMarkovModel.java
                      • package-info.java
                      • ParallelHiddenMarkovModel.java
                      • MarkovChain.java
                      • ParallelBaumWelchAlgorithm.java
                    • root
                      • RootFinder.java
                      • RootFinderRiddersMethod.java
                      • RootFinderBisectionMethod.java
                      • RootFinderSecantMethod.java
                      • RootBracketExpander.java
                      • AbstractBracketedRootFinder.java
                      • SolverFunction.java
                      • RootBracketer.java
                      • MinimizerBasedRootFinder.java
                      • package-info.java
                      • RootFinderFalsePositionMethod.java
                      • RootFinderNewtonsMethod.java
                      • AbstractRootFinder.java
                    • AbstractBatchAndIncrementalLearner.java
                    • SupervisedBatchAndIncrementalLearner.java
                    • pca
                      • AbstractPrincipalComponentsAnalysis.java
                      • PrincipalComponentsAnalysisFunction.java
                      • KernelPrincipalComponentsAnalysis.java
                      • package-info.java
                      • GeneralizedHebbianAlgorithm.java
                      • PrincipalComponentsAnalysis.java
                      • ThinSingularValueDecomposition.java
                    • annealing
                      • SimulatedAnnealer.java
                      • package-info.java
                      • Perturber.java
                      • VectorizablePerturber.java
                    • AbstractAnytimeSupervisedBatchLearner.java
                    • CompositeBatchLearnerPair.java
                    • nearest
                      • AbstractNearestNeighbor.java
                      • KNearestNeighbor.java
                      • NearestNeighborExhaustive.java
                      • AbstractKNearestNeighbor.java
                      • NearestNeighborKDTree.java
                      • KNearestNeighborKDTree.java
                      • package-info.java
                      • KNearestNeighborExhaustive.java
                      • NearestNeighbor.java
                    • semisupervised
                      • valence
                        • MultipartiteValenceMatrix.java
                  • performance
                    • MeanSquaredErrorEvaluator.java
                    • AbstractSupervisedPerformanceEvaluator.java
                    • MeanZeroOneErrorEvaluator.java
                    • PerformanceEvaluator.java
                    • package-info.java
                    • categorization
                      • DefaultConfusionMatrix.java
                      • DefaultBinaryConfusionMatrix.java
                      • ConfusionMatrixPerformanceEvaluator.java
                      • BinaryConfusionMatrix.java
                      • AbstractConfusionMatrix.java
                      • package-info.java
                      • ConfusionMatrix.java
                      • AbstractBinaryConfusionMatrix.java
                      • DefaultBinaryConfusionMatrixConfidenceInterval.java
                    • MeanAbsoluteErrorEvaluator.java
                    • AnytimeBatchLearnerValidationPerformanceReporter.java
                    • SupervisedPerformanceEvaluator.java
                    • RootMeanSquaredErrorEvaluator.java
                • data
                  • temporal
                    • SeekableTemporalDataReadChannel.java
                    • TemporalDataReadChannel.java
                    • package-info.java
                    • TemporalDataSource.java
                    • BatchTemporalDataSource.java
        • build-tools.xml
      • GraphCore
        • build.xml
        • pom.xml
        • Test
          • gov
            • sandia
              • cognition
                • graph
                  • WeightedDenseMemoryGraphTest.java
                  • GraphWalkerTest.java
                  • DenseMemoryGraphTest.java
                  • community
                    • PersonalizedPageRankTest.java
                    • LouvainTest.java
                    • YaleFormatWeightedNeighborsTest.java
                    • CommunityMetricsTest.java
                    • PermanenceTest.java
                    • CommunityComparisonsTest.java
                  • inference
                    • GraphWrappingEnergyFunctionTest.java
                    • EdgeMergingEnergyFunctionTest.java
                    • SumProductDirectedPropagationTest.java
                    • CostSpeedupEnergyFunctionTest.java
                    • BasicHomogeneousHandler.java
                    • SumProductBeliefPropagationTest.java
                    • InferenceHelper.java
                  • GraphMetricsTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • gov
            • sandia
              • cognition
                • graph
                  • GraphWalker.java
                  • DirectedNodeEdgeGraph.java
                  • WeightedDenseMemoryGraph.java
                  • DirectedWeightedNodeEdgeGraph.java
                  • GraphUtil.java
                  • community
                    • CommunityMetrics.java
                    • NodePartitioning.java
                    • Louvain.java
                    • CommunityComparisons.java
                    • MutableNodePartitioning.java
                    • YaleFormatWeightedNeighbors.java
                    • Permanence.java
                    • PersonalizedPageRank.java
                  • GraphMetrics.java
                  • inference
                    • SumProductInferencingAlgorithm.java
                    • EdgeMergingEnergyFunction.java
                    • CostSpeedupEnergyFunction.java
                    • EnergyFunction.java
                    • Node.java
                    • Message.java
                    • EnergyFunctionSolver.java
                    • GraphWrappingEnergyFunction.java
                    • SumProductDirectedPropagation.java
                    • NodeNameAwareEnergyFunction.java
                    • SumProductBeliefPropagation.java
                  • DenseMemoryGraph.java
        • build-tools.xml
      • CommonData
        • build.xml
        • pom.xml
        • Test
          • gov
            • sandia
              • cognition
                • data
                  • convert
                    • IdentityDataConverterTest.java
                    • ObjectToStringConverterTest.java
                    • vector
                      • NumberConverterToVectorAdapterTest.java
                      • NumberToVectorEncoderTest.java
                      • UniqueBooleanVectorEncoderTest.java
                    • number
                      • DefaultBooleanToNumberConverterTest.java
                      • StringToIntegerConverterTest.java
                      • StringToDoubleConverterTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • gov
            • sandia
              • cognition
                • data
                  • convert
                    • AbstractDataConverter.java
                    • ReversibleDataConverter.java
                    • AbstractReversibleDataConverter.java
                    • IdentityDataConverter.java
                    • package-info.java
                    • AbstractReverseCachedDataConverter.java
                    • vector
                      • AbstractToVectorEncoder.java
                      • UniqueBooleanVectorEncoder.java
                      • NumberToVectorEncoder.java
                      • package-info.java
                      • DataToVectorEncoder.java
                      • NumberConverterToVectorAdapter.java
                    • DataConverter.java
                    • number
                      • StringToDoubleConverter.java
                      • DefaultBooleanToNumberConverter.java
                      • StringToIntegerConverter.java
                      • package-info.java
                    • ObjectToStringConverter.java
        • build-tools.xml
      • CommonCore
        • build.xml
        • pom.xml
        • Test
          • gov
            • sandia
              • cognition
                • evaluator
                  • IdentityEvaluatorTest.java
                  • CompositeEvaluatorListTest.java
                  • ValueClamperTest.java
                  • AbstractStatefulEvaluatorTest.java
                  • ValueMapperTest.java
                  • ForwardReverseEvaluatorPairTest.java
                  • CompositeEvaluatorPairTest.java
                  • CompositeEvaluatorTripleTest.java
                • testutil
                  • MatrixUtil.java
                  • AssertUtil.java
                • time
                  • DefaultDurationTest.java
                • util
                  • AbstractCloneableSerializableTest.java
                  • DefaultWeightedPairTest.java
                  • DefaultNamedValueTest.java
                  • DefaultKeyValuePairTest.java
                  • AbstractRandomizedTest.java
                  • ArrayIndexSorterTest.java
                  • DefaultWeightedValueTest.java
                  • AbstractTemporalTest.java
                  • StringUtilTest.java
                  • DefaultTripleTest.java
                  • DefaultTemporalValueTest.java
                  • ObjectUtilTest.java
                  • DoubleReuseRandomTest.java
                  • DefaultIdentifiedValueTest.java
                  • DefaultPairTest.java
                  • ArgumentCheckerTest.java
                  • AbstractWeightedTest.java
                • collection
                  • DoubleArrayListTest.java
                  • FiniteCapacityBufferTest.java
                  • IntegerSpanTest.java
                  • ArrayUtilTest.java
                  • IntArrayListTest.java
                  • DynamicArrayMapTest.java
                  • ScalarMapTestHarness.java
                  • DefaultComparatorTest.java
                  • DefaultMultiCollectionTest.java
                  • RangeExcludedArrayListTest.java
                  • MultiIteratorTest.java
                  • NumberComparatorTest.java
                  • CollectionUtilTest.java
                  • DefaultIndexerTest.java
                • factory
                  • PrototypeFactoryTest.java
                  • DefaultFactoryTest.java
                  • ConstructorBasedFactoryTest.java
                • io
                  • ObjectSerializationHandlerTest.java
                  • FileUtilTest.java
                  • serialization
                    • GZIPSerializationHandlerTest.java
                    • TextSerializationHandlerTestHarness.java
                    • JavaDefaultBinarySerializationHandlerTest.java
                    • FileSerializationHandlerTestHarness.java
                    • StreamSerializationHandlerTestHarness.java
                    • XStreamSerializationHandlerTest.java
                  • CSVUtilityTest.java
                  • ProcessLauncherEventTest.java
                  • ReaderTokenizerTest.java
                  • ProcessLauncherTest.java
                  • CSVParseExceptionTest.java
                  • XStreamSerializationHandlerTest.java
                • math
                  • RingTestHarness.java
                  • LentzMethodTest.java
                  • WeightedNumberAveragerTest.java
                  • ComplexNumberTest.java
                  • MathUtilTest.java
                  • AbstractDifferentiableUnivariateScalarFunctionTest.java
                  • geometry
                    • QuadtreeTest.java
                    • KDTreeTest.java
                  • CombinationsTest.java
                  • NumberAveragerTest.java
                  • UnivariateStatisticsUtilTest.java
                  • WeightedRingAveragerTest.java
                  • RingAveragerTest.java
                  • OperationNotConvergedExceptionTest.java
                  • AbstractRingTest.java
                  • AbstractUnivariateScalarFunctionTest.java
                  • EuclideanRingTestHarness.java
                  • PermutationTest.java
                  • LogMathTest.java
                  • ProbabilityUtilTest.java
                  • MutableLongTest.java
                  • UnsignedLogNumberTest.java
                  • MultivariateStatisticsUtilTest.java
                  • signals
                    • FourierTransformTest.java
                    • MovingAverageFilterTest.java
                    • AutoRegressiveMovingAverageFilterTest.java
                    • LinearDynamicalSystemTest.java
                    • PIDControllerTest.java
                  • LogNumberTest.java
                  • matrix
                    • NumericalDifferentiatorTestHarness.java
                    • NumericalDifferentiatorMatrixJacobianTest.java
                    • MatrixFactoryTestHarness.java
                    • mtj
                      • MatrixEntryIndexComparatorMTJTest.java
                      • DiagonalMatrixFactoryMTJTest.java
                      • AbstractSparseMatrixTest.java
                      • AbstractMTJMatrixTest.java
                      • AbstractMTJVectorTest.java
                      • SparseMatrixTest.java
                      • NativeMatrixTestsTest.java
                      • DenseVectorFactoryMTJTest.java
                      • SparseVectorFactoryMTJTest.java
                      • DenseMatrixTest.java
                      • SparseMatrixFactoryMTJTest.java
                      • DiagonalMatrixMTJTest.java
                      • SparseRowMatrixTest.java
                      • MatrixUnionIteratorMTJTest.java
                      • decomposition
                        • SingularValueDecompositionMTJTest.java
                        • CholeskyDecompositionMTJTest.java
                        • EigenDecompositionRightMTJTest.java
                      • Vector3Test.java
                      • Vector2Test.java
                      • DenseVectorTest.java
                      • DenseMatrixFactoryMTJTest.java
                      • SparseColumnMatrixTest.java
                      • MatrixTimeTest.java
                      • SparseVectorTest.java
                      • Vector1Test.java
                      • TwoMatrixEntryMTJTest.java
                    • DimensionalityMismatchExceptionTest.java
                    • AbstractVectorTest.java
                    • VectorizableIndexComparatorTest.java
                    • DifferentiableVectorFunctionTestHarness.java
                    • NumericalDifferentiatorVectorJacobianTest.java
                    • VectorUtilTest.java
                    • NumericalDifferentiatorDoubleJacobianTest.java
                    • MatrixInteroperabilityTest.java
                    • InfiniteVectorTestHarness.java
                    • VectorSpaceTestHarness.java
                    • MatrixReaderTest.java
                    • AbstractMatrixTest.java
                    • MatrixFactoryTest.java
                    • SparseVectorFactoryTest.java
                    • DefaultVectorFactoryContainerTest.java
                    • DefaultInfiniteVectorTest.java
                    • MatrixWriterTest.java
                    • VectorInteroperabilityTest.java
                    • VectorUnionIteratorTest.java
                    • decomposition
                      • AbstractEigenDecompositionTest.java
                      • AbstractSingularValueDecompositionTest.java
                      • EigenvectorPowerIterationTest.java
                    • MatrixTestHarness.java
                    • VectorWriterTest.java
                    • VectorFactoryTest.java
                    • VectorReaderTest.java
                    • VectorFactoryTestHarness.java
                    • VectorEntryIndexComparatorTest.java
                    • custom
                      • ConstructorTest.java
                      • MatrixCorrectnessTest.java
                      • VectorTest.java
                      • DenseVectorTest.java
                      • SparseVectorTest.java
                    • DefaultTwoVectorEntryTest.java
                    • VectorTestHarness.java
                  • UnivariateSummaryStatisticsTest.java
                  • MutableIntegerTest.java
                  • MutableDoubleTest.java
                  • FieldTestHarness.java
                  • RingAccumulatorTest.java
                • annotation
                  • PublicationTypeTest.java
                  • SoftwareLicenseTypeTest.java
                • hash
                  • FNV1a32HashTest.java
                  • SHA256HashTest.java
                  • Eva64HashTest.java
                  • Eva32HashTest.java
                  • MD5HashTest.java
                  • FNV1a64HashTest.java
                  • HashFunctionTestHarness.java
                  • SHA1HashTest.java
                  • Murmur32HashTest.java
                  • SHA512HashTest.java
                  • HashFunctionUtilTest.java
                  • Prime32HashTest.java
                  • Prime64HashTest.java
                • algorithm
                  • AnytimeAlgorithmWrapperTest.java
                  • DummyIterativeLearnerListener.java
                  • event
                    • IterationMeasurablePerformanceReporterTest.java
                    • IterationStartReporterTest.java
                    • AbstractIterativeAlgorithmListenerTest.java
                  • AbstractIterativeAlgorithmTest.java
                  • AbstractParallelAlgorithmTest.java
                  • ParallelUtilTest.java
                  • AbstractAnytimeAlgorithmTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • gov
            • sandia
              • cognition
                • evaluator
                  • ValueClamper.java
                  • ForwardReverseEvaluatorPair.java
                  • IdentityEvaluator.java
                  • Evaluator.java
                  • StatefulEvaluator.java
                  • AbstractStatefulEvaluator.java
                  • CompositeEvaluatorPair.java
                  • ValueMapper.java
                  • CompositeEvaluatorList.java
                  • CompositeEvaluatorTriple.java
                  • package-info.java
                  • ReversibleEvaluator.java
                • time
                  • Duration.java
                  • package-info.java
                  • DefaultDuration.java
                • util
                  • Randomized.java
                  • DefaultTemporalValue.java
                  • DoubleReuseRandom.java
                  • StringUtil.java
                  • Summarizer.java
                  • DefaultPair.java
                  • DefaultNamedValue.java
                  • AbstractCloneableSerializable.java
                  • KeyValuePair.java
                  • AbstractWeighted.java
                  • ArgumentChecker.java
                  • CloneableSerializable.java
                  • Temporal.java
                  • ObjectUtil.java
                  • DefaultTriple.java
                  • AbstractNamed.java
                  • Named.java
                  • DefaultWeightedPair.java
                  • package-info.java
                  • WeightedValue.java
                  • Weighted.java
                  • TemporalValue.java
                  • WeightedPair.java
                  • AbstractTemporal.java
                  • Triple.java
                  • ArrayIndexSorter.java
                  • IdentifiedValue.java
                  • NamedValue.java
                  • AbstractRandomized.java
                  • DefaultKeyValuePair.java
                  • Pair.java
                  • DefaultIdentifiedValue.java
                  • DefaultWeightedValue.java
                  • Identified.java
                • collection
                  • DefaultComparator.java
                  • DefaultIndexer.java
                  • DynamicArrayMap.java
                  • ArrayUtil.java
                  • PrimitiveArrayList.java
                  • AbstractLogNumberMap.java
                  • NumericMap.java
                  • DoubleArrayList.java
                  • AbstractScalarMap.java
                  • RangeExcludedArrayList.java
                  • package-info.java
                  • Indexer.java
                  • NumberComparator.java
                  • IntegerSpan.java
                  • MultiIterator.java
                  • CollectionUtil.java
                  • MultiCollection.java
                  • AbstractMutableDoubleMap.java
                  • DefaultMultiCollection.java
                  • FiniteCapacityBuffer.java
                  • IntArrayList.java
                  • ScalarMap.java
                • factory
                  • ConstructorBasedFactory.java
                  • DefaultFactory.java
                  • Factory.java
                  • package-info.java
                  • PrototypeFactory.java
                • io
                  • ProcessLauncherEvent.java
                  • CSVUtility.java
                  • serialization
                    • StreamSerializationHandler.java
                    • GZIPSerializationHandler.java
                    • TextSerializationHandler.java
                    • JavaDefaultBinarySerializationHandler.java
                    • package-info.java
                    • XStreamSerializationHandler.java
                    • FileSerializationHandler.java
                    • AbstractTextSerializationHandler.java
                    • AbstractFileSerializationHandler.java
                    • AbstractStreamSerializationHandler.java
                  • ProcessLauncherListener.java
                  • ProcessLauncher.java
                  • FileUtil.java
                  • package-info.java
                  • XStreamSerializationHandler.java
                  • ObjectSerializationHandler.java
                  • CSVParseException.java
                  • ReaderTokenizer.java
                • math
                  • ScalarFunction.java
                  • LentzMethod.java
                  • AbstractUnivariateScalarFunction.java
                  • RingAccumulator.java
                  • geometry
                    • package-info.java
                    • Quadtree.java
                    • KDTree.java
                  • DivergenceFunction.java
                  • UnsignedLogNumber.java
                  • MultivariateStatisticsUtil.java
                  • MutableLong.java
                  • ProbabilityUtil.java
                  • AbstractRing.java
                  • Metric.java
                  • NumberAverager.java
                  • LogMath.java
                  • DifferentiableEvaluator.java
                  • ClosedFormDifferentiableEvaluator.java
                  • WeightedRingAverager.java
                  • Field.java
                  • UnivariateSummaryStatistics.java
                  • Combinations.java
                  • RingAverager.java
                  • LogNumber.java
                  • OperationNotConvergedException.java
                  • ComplexNumber.java
                  • UnivariateStatisticsUtil.java
                  • DifferentiableUnivariateScalarFunction.java
                  • Semimetric.java
                  • package-info.java
                  • WeightedNumberAverager.java
                  • Ring.java
                  • AbstractEuclideanRing.java
                  • signals
                    • AutoRegressiveMovingAverageFilter.java
                    • MovingAverageFilter.java
                    • FourierTransform.java
                    • PIDController.java
                    • package-info.java
                    • DiscreteTimeFilter.java
                    • LinearDynamicalSystem.java
                  • MutableDouble.java
                  • Permutation.java
                  • MathUtil.java
                  • AbstractField.java
                  • AbstractScalarFunction.java
                  • matrix
                    • VectorFactory.java
                    • EntryIndexComparator.java
                    • Vectorizable.java
                    • VectorUnionIterator.java
                    • VectorEntryIndexComparator.java
                    • MatrixWriter.java
                    • VectorOutputEvaluator.java
                    • TwoVectorEntry.java
                    • mtj
                      • Vector1.java
                      • NativeMatrixTests.java
                      • SparseMatrix.java
                      • Vector2.java
                      • MatrixUnionIteratorMTJ.java
                      • SparseVector.java
                      • DenseVectorFactoryMTJ.java
                      • MatrixEntryIndexComparatorMTJ.java
                      • AbstractMTJMatrix.java
                      • package-info.java
                      • DenseVector.java
                      • DenseMatrix.java
                      • SparseMatrixFactoryMTJ.java
                      • AbstractMTJVector.java
                      • SparseRowMatrix.java
                      • decomposition
                        • CholeskyDecompositionMTJ.java
                        • SingularValueDecompositionMTJ.java
                        • package-info.java
                        • EigenDecompositionRightMTJ.java
                      • TwoMatrixEntryMTJ.java
                      • DiagonalMatrixMTJ.java
                      • DiagonalMatrixFactoryMTJ.java
                      • SparseVectorFactoryMTJ.java
                      • AbstractSparseMatrix.java
                      • Vector3.java
                      • SparseColumnMatrix.java
                      • DenseMatrixFactoryMTJ.java
                    • VectorReader.java
                    • SparseVectorFactory.java
                    • VectorEntry.java
                    • VectorUtil.java
                    • MatrixEntry.java
                    • Vector3D.java
                    • MatrixReader.java
                    • NumericalDifferentiator.java
                    • VectorInputEvaluator.java
                    • MatrixFactoryContainer.java
                    • AbstractVectorSpace.java
                    • VectorizableIndexComparator.java
                    • VectorWriter.java
                    • DifferentiableVectorFunction.java
                    • MatrixFactory.java
                    • TwoMatrixEntry.java
                    • Matrix.java
                    • Vector1D.java
                    • package-info.java
                    • Vector.java
                    • DefaultInfiniteVector.java
                    • DefaultTwoVectorEntry.java
                    • VectorizableVectorFunction.java
                    • Quaternion.java
                    • VectorFunction.java
                    • DiagonalMatrix.java
                    • decomposition
                      • AbstractEigenDecomposition.java
                      • package-info.java
                      • EigenDecomposition.java
                      • AbstractSingularValueDecomposition.java
                      • SingularValueDecomposition.java
                      • EigenvectorPowerIteration.java
                    • Vector2D.java
                    • AbstractMatrix.java
                    • VectorFactoryContainer.java
                    • MatrixUnionIterator.java
                    • custom
                      • CustomDenseVectorFactory.java
                      • BaseMatrixEntry.java
                      • SparseMatrix.java
                      • BaseVector.java
                      • CustomSparseVectorFactory.java
                      • ParallelMatrixMergeFunction.java
                      • SparseVector.java
                      • CustomDenseMatrixFactory.java
                      • ParallelSparseMatrix.java
                      • BaseMatrix.java
                      • ParallelMatrixFunction.java
                      • package-info.java
                      • DenseVector.java
                      • DenseMatrix.java
                      • CustomSparseMatrixFactory.java
                      • DiagonalMatrix.java
                      • CustomDiagonalMatrixFactory.java
                      • NativeBlasHandler.java
                      • MatrixIterator.java
                      • BaseVectorEntry.java
                      • VectorIterator.java
                    • AbstractVector.java
                    • DefaultVectorFactoryContainer.java
                    • InfiniteVector.java
                    • VectorSpace.java
                    • VectorizableDifferentiableVectorFunction.java
                    • DimensionalityMismatchException.java
                  • UnivariateScalarFunction.java
                  • EuclideanRing.java
                  • MutableInteger.java
                  • AbstractDifferentiableUnivariateScalarFunction.java
                • annotation
                  • ModelingApproximation.java
                  • CodeReview.java
                  • PublicationReference.java
                  • CodeReviews.java
                  • PublicationReferences.java
                  • PublicationType.java
                  • CodeReviewResponse.java
                  • SoftwareReference.java
                  • package-info.java
                  • SoftwareReferences.java
                  • SoftwareLicenseType.java
                  • Documentation.java
                • hash
                  • SHA256Hash.java
                  • AbstractHashFunction.java
                  • HashFunctionUtil.java
                  • SHA512Hash.java
                  • MD5Hash.java
                  • Eva32Hash.java
                  • Murmur32Hash.java
                  • Prime32Hash.java
                  • package-info.java
                  • HashFunction.java
                  • Prime64Hash.java
                  • FNV1a64Hash.java
                  • SHA1Hash.java
                  • Eva64Hash.java
                  • FNV1a32Hash.java
                • algorithm
                  • AbstractAnytimeAlgorithm.java
                  • MeasurablePerformanceAlgorithm.java
                  • IterativeAlgorithm.java
                  • ParallelAlgorithm.java
                  • AnytimeAlgorithmWrapper.java
                  • package-info.java
                  • event
                    • package-info.java
                    • IterationMeasurablePerformanceReporter.java
                    • IterationStartReporter.java
                    • AbstractIterativeAlgorithmListener.java
                  • StoppableAlgorithm.java
                  • AbstractParallelAlgorithm.java
                  • ParallelUtil.java
                  • IterativeAlgorithmListener.java
                  • AbstractIterativeAlgorithm.java
                  • AnytimeAlgorithm.java
        • build-tools.xml
      • TextCore
        • build.xml
        • pom.xml
        • Test
          • gov
            • sandia
              • cognition
                • text
                  • topic
                    • LatentSemanticAnalysisTest.java
                    • ProbabilisticLatentSemanticAnalysisTest.java
                    • ParallelLatentDirichletAllocationVectorGibbsSamplerTest.java
                    • LatentDirichletAllocationVectorGibbsSamplerTest.java
                  • AbstractOccurrenceInTextTest.java
                  • DefaultTextualTest.java
                  • evaluation
                    • DefaultPrecisionRecallPairTest.java
                  • document
                    • extractor
                      • resources
                      • DocumentExtractionExceptionTest.java
                      • TextDocumentExtractorTest.java
                    • DefaultDateFieldTest.java
                  • convert
                    • DocumentSingleFieldConverterTest.java
                    • AbstractSingleTextualConverterTest.java
                    • SingleToMultiTextualConverterAdapterTest.java
                    • AbstractTextualConverterTest.java
                    • ObjectToStringTextualConverterTest.java
                    • CommonDocumentTextualConverterFactoryTest.java
                    • AbstractMultiTextualConverterTest.java
                    • DocumentFieldConcatenatorTest.java
                  • token
                    • DefaultTokenTest.java
                    • LetterNumberTokenizerTest.java
                  • spelling
                    • SimpleStatisticalSpellingCorrectorTest.java
                  • term
                    • DefaultTermTest.java
                    • DefaultTermIndexTest.java
                    • DefaultIndexedTermTest.java
                    • vector
                      • BagOfWordsTransformTest.java
                      • weighter
                        • global
                          • DominanceGlobalTermWeighterTest.java
                          • AbstractEntropyBasedGlobalTermWeighterTest.java
                          • InverseDocumentFrequencyGlobalTermWeighterTest.java
                          • AbstractGlobalTermWeighterTest.java
                          • EntropyGlobalTermWeighterTest.java
                          • AbstractFrequencyBasedGlobalTermWeighterTest.java
                        • CommonTermWeighterFactoryTest.java
                        • CompositeLocalGlobalTermWeighterTest.java
                        • local
                          • NormalizedLogLocalTermWeighterTest.java
                          • AbstractLocalTermWeighterTest.java
                          • BinaryLocalTermWeighterTest.java
                          • TermFrequencyLocalTermWeighterTest.java
                          • LogLocalTermWeighterTest.java
                        • normalize
                          • AbstractTermWeightNormalizerTest.java
                          • UnitTermWeightNormalizerTest.java
                      • CosineSimilarityFunctionTest.java
                    • DefaultTermNGramTest.java
                    • DefaultTermOccurrenceTest.java
                    • AbstractTermTest.java
                    • filter
                      • SynonymFilterTest.java
                      • resources
                      • NGramFilterTest.java
                      • DictionaryFilterTest.java
                      • stem
                        • PorterEnglishStemmingFilterTest.java
                      • StopListFilterTest.java
                      • TermLengthFilterTest.java
                      • DefaultStopListTest.java
                      • LowerCaseTermFilterTest.java
                      • StringEvaluatorSingleTermFilterTest.java
                      • AbstractSingleTermFilterTest.java
                    • relation
                      • IndexedTermSimilarityRelationTest.java
                      • TermVectorSimilarityNetworkCreatorTest.java
                      • MatrixBasedTermSimilarityNetworkTest.java
                  • relation
                    • AbstractRelationTest.java
                  • algorithm
                    • ValenceSpreaderTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • gov
            • sandia
              • cognition
                • text
                  • topic
                    • ProbabilisticLatentSemanticAnalysis.java
                    • ParallelLatentDirichletAllocationVectorGibbsSampler.java
                    • package-info.java
                    • LatentSemanticAnalysis.java
                    • LatentDirichletAllocationVectorGibbsSampler.java
                  • Textual.java
                  • DefaultTextual.java
                  • AbstractTextual.java
                  • evaluation
                    • package-info.java
                    • PrecisionRecallPair.java
                    • DefaultPrecisionRecallPair.java
                  • document
                    • DefaultDocument.java
                    • extractor
                      • TextDocumentExtractor.java
                      • AbstractDocumentExtractor.java
                      • DocumentExtractor.java
                      • DocumentExtractionException.java
                      • package-info.java
                      • AbstractSingleDocumentExtractor.java
                      • SingleDocumentExtractor.java
                    • Field.java
                    • FileReference.java
                    • DefaultDateField.java
                    • package-info.java
                    • AbstractField.java
                    • Document.java
                    • DefaultTextField.java
                    • AbstractDocument.java
                    • DocumentReference.java
                  • package-info.java
                  • convert
                    • DocumentSingleFieldConverter.java
                    • AbstractSingleTextualConverter.java
                    • ObjectToStringTextualConverter.java
                    • DocumentFieldConcatenator.java
                    • AbstractTextualConverter.java
                    • SingleToMultiTextualConverterAdapter.java
                    • package-info.java
                    • CommonDocumentTextualConverterFactory.java
                    • SingleTextualConverter.java
                    • TextualConverter.java
                    • AbstractMultiTextualConverter.java
                    • MultiTextualConverter.java
                  • AbstractOccurrenceInText.java
                  • token
                    • Token.java
                    • AbstractCharacterBasedTokenizer.java
                    • Tokenizer.java
                    • DefaultToken.java
                    • AbstractTokenizer.java
                    • package-info.java
                    • LetterNumberTokenizer.java
                  • spelling
                    • SimpleStatisticalSpellingCorrector.java
                    • package-info.java
                  • OccurrenceInText.java
                  • term
                    • TermIndex.java
                    • AbstractTermIndex.java
                    • TermFactory.java
                    • IndexedTerm.java
                    • DefaultTermCounts.java
                    • DefaultTerm.java
                    • DefaultIndexedTerm.java
                    • Term.java
                    • Termable.java
                    • TermOccurrence.java
                    • DefaultTermNGram.java
                    • TermNGram.java
                    • package-info.java
                    • vector
                      • CosineSimilarityFunction.java
                      • weighter
                        • CompositeLocalGlobalTermWeighter.java
                        • global
                          • AbstractFrequencyBasedGlobalTermWeighter.java
                          • AbstractEntropyBasedGlobalTermWeighter.java
                          • AbstractGlobalTermWeighter.java
                          • package-info.java
                          • DominanceGlobalTermWeighter.java
                          • EntropyGlobalTermWeighter.java
                          • InverseDocumentFrequencyGlobalTermWeighter.java
                          • GlobalTermWeighter.java
                        • package-info.java
                        • local
                          • NormalizedLogLocalTermWeighter.java
                          • LocalTermWeighter.java
                          • package-info.java
                          • AbstractLocalTermWeighter.java
                          • LogLocalTermWeighter.java
                          • TermFrequencyLocalTermWeighter.java
                          • BinaryLocalTermWeighter.java
                        • normalize
                          • UnitTermWeightNormalizer.java
                          • TermWeightNormalizer.java
                          • package-info.java
                          • AbstractTermWeightNormalizer.java
                        • CommonTermWeighterFactory.java
                      • package-info.java
                      • VectorSpaceModel.java
                      • BagOfWordsTransform.java
                      • AbstractVectorSpaceModel.java
                    • TermCounts.java
                    • AbstractTerm.java
                    • DefaultTermOccurrence.java
                    • filter
                      • AbstractSingleTermFilter.java
                      • TermFilter.java
                      • TermLengthFilter.java
                      • DictionaryFilter.java
                      • DefaultStopList.java
                      • StopListFilter.java
                      • stem
                        • PorterEnglishStemmingFilter.java
                        • package-info.java
                      • package-info.java
                      • SingleTermFilter.java
                      • LowerCaseTermFilter.java
                      • NGramFilter.java
                      • SynonymFilter.java
                      • StopList.java
                      • StringEvaluatorSingleTermFilter.java
                    • relation
                      • IndexedTermSimilarityRelation.java
                      • package-info.java
                      • TermVectorSimilarityNetworkCreator.java
                      • MatrixBasedTermSimilarityNetwork.java
                    • DefaultTermIndex.java
                  • relation
                    • AbstractRelation.java
                    • SimilarityFunction.java
                    • package-info.java
                    • RelationNetwork.java
                  • algorithm
                    • ValenceSpreader.java
        • build-tools.xml
      • GraphExamples
        • build.xml
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • examples
            • InfluenceMaximization.java
            • RunLouvain.java
            • RunPpr.java
            • InfluenceSpread.java
            • GraphStats.java
            • io
              • GraphFileIo.java
            • InfluencePotentialHandler.java
      • LearningExamples
        • build.xml
        • Test
          • examples
            • MixtureOfGaussiansExampleTest.java
            • CustomClusteringExampleTest.java
            • SimpleKMeansExampleTest.java
            • LearningExperimentExampleTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • examples
            • MixtureOfGaussiansExample.java
            • SimpleKMeansExample.java
            • LearningExperimentExample.java
            • CustomClusteringExample.java
        • build-tools.xml
      • FrameworkExamples
        • build.xml
        • Test
          • examples
            • BasicCognitiveModelLiteExampleTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • examples
            • BasicCognitiveModelLiteExample.java
            • package-info.java
        • build-tools.xml
      • CommonExamples
        • build.xml
        • Test
          • examples
            • XStreamSerializationHandlerExampleTest.java
            • EvaluatorExampleTest.java
            • MatrixAndVectorExampleTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • examples
            • XStreamSerializationHandlerExample.java
            • MatrixAndVectorExample.java
            • EvaluatorExample.java
        • build-tools.xml
      • FrameworkLearning
        • build.xml
        • pom.xml
        • Test
          • gov
            • sandia
              • cognition
                • framework
                  • learning
                    • EvaluatorBasedCognitiveModuleFactoryTest.java
                    • StatefulEvaluatorBasedCognitiveModuleTest.java
                    • EvaluatorBasedCognitiveModuleTest.java
                    • CogxelVectorConverterTest.java
                    • converter
                      • CogxelInputOutputPairConverterTest.java
                      • CogxelMatrixConverterTest.java
                      • CogxelDoubleConverterTest.java
                      • CogxelBooleanConverterTest.java
                      • CogxelVectorCollectionConverterTest.java
                    • EvaluatorBasedCognitiveModuleSettingsTest.java
                    • EvaluatorBasedCognitiveModuleFactoryLearnerTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • gov
            • sandia
              • cognition
                • framework
                  • learning
                    • EvaluatorBasedCognitiveModuleSettings.java
                    • StatefulEvaluatorBasedCognitiveModule.java
                    • EvaluatorBasedCognitiveModuleFactoryLearner.java
                    • package-info.java
                    • CognitiveModuleFactoryLearner.java
                    • EvaluatorBasedCognitiveModuleFactory.java
                    • converter
                      • AbstractCogxelPairConverter.java
                      • CogxelDoubleConverter.java
                      • AbstractCogxelConverter.java
                      • CogxelMatrixConverter.java
                      • CogxelVectorConverter.java
                      • CogxelConverter.java
                      • package-info.java
                      • CogxelInputOutputPairConverter.java
                      • CogxelWeightedInputOutputPairConverter.java
                      • CogxelVectorCollectionConverter.java
                      • CogxelBooleanConverter.java
                      • CogxelTargetEstimatePairConverter.java
                    • EvaluatorBasedCognitiveModule.java
        • build-tools.xml
      • FrameworkCore
        • build.xml
        • pom.xml
        • Test
          • gov
            • sandia
              • cognition
                • framework
                  • DefaultSemanticIdentifierTest.java
                  • DummyModuleState.java
                  • lite
                    • CognitiveModuleStateWrapperTest.java
                    • CognitiveModelLiteTest.java
                    • VectorBasedPerceptionModuleFactoryTest.java
                    • SharedSemanticMemoryLiteFactoryTest.java
                    • ArrayBasedPerceptionModuleFactoryTest.java
                    • CognitiveModelLiteFactoryTest.java
                    • MutableSemanticMemoryLiteFactoryTest.java
                    • CognitiveModelLiteStateTest.java
                    • SharedSemanticMemoryLiteSettingsTest.java
                    • SharedSemanticMemoryLiteTest.java
                    • ArrayBasedPerceptionModuleTest.java
                    • MutableSemanticMemoryLiteTest.java
                    • CogxelStateLiteTest.java
                    • SimplePatternRecognizerTest.java
                    • VectorBasedPerceptionModuleTest.java
                    • SimplePatternRecognizerStateTest.java
                    • ArrayBasedCognitiveModelInputTest.java
                    • AbstractSemanticMemoryLiteTest.java
                    • BooleanActivatableCogxelTest.java
                    • BooleanActivatableCogxelFactoryTest.java
                    • VectorBasedCognitiveModelInputTest.java
                  • DefaultCogxelFactoryTest.java
                  • DummyCogxelFactory.java
                  • io
                    • CSVDefaultCognitiveModelLiteHandlerTest.java
                    • SerializedModelHandlerTest.java
                  • DummyModuleFactory.java
                  • DefaultCogxelTest.java
                  • concurrent
                    • MultithreadedCognitiveModelTest.java
                    • MultithreadedCognitiveModelFactoryTest.java
                  • DummyModelInput.java
                  • AbstractCognitiveModelTest.java
                  • AbstractCognitiveModelFactoryTest.java
                  • DefaultSemanticIdentifierMapTest.java
                  • FrameworkCoreTests.java
                  • CognitiveModelStateChangeEventTest.java
                  • DefaultSemanticNetworkTest.java
                  • DefaultSemanticLabelTest.java
                  • DummyModule.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • gov
            • sandia
              • cognition
                • framework
                  • AbstractCognitiveModelFactory.java
                  • DefaultSemanticLabel.java
                  • DefaultSemanticNetwork.java
                  • CognitiveModule.java
                  • AbstractCognitiveModel.java
                  • CognitiveModel.java
                  • Cogxel.java
                  • DefaultCogxel.java
                  • CogxelState.java
                  • SemanticMemory.java
                  • ActivatableCogxel.java
                  • SemanticIdentifierMap.java
                  • CognitiveModelListener.java
                  • AbstractSemanticIdentifier.java
                  • SemanticIdentifierMapListener.java
                  • SemanticIdentifier.java
                  • SemanticLabel.java
                  • lite
                    • CogxelStateLite.java
                    • AbstractCognitiveModelLite.java
                    • CognitiveModelLiteFactory.java
                    • MutableSemanticMemoryLiteFactory.java
                    • SimplePatternRecognizer.java
                    • PatternRecognizerLite.java
                    • AbstractSemanticMemoryLite.java
                    • SharedSemanticMemoryLite.java
                    • MutableSemanticMemoryLite.java
                    • VectorBasedCognitiveModelInput.java
                    • CognitiveModelLite.java
                    • ArrayBasedPerceptionModuleFactory.java
                    • BooleanActivatableCogxel.java
                    • VectorBasedPerceptionModuleFactory.java
                    • package-info.java
                    • SharedSemanticMemoryLiteSettings.java
                    • ArrayBasedPerceptionModule.java
                    • BooleanActivatableCogxelFactory.java
                    • CognitiveModuleStateWrapper.java
                    • VectorBasedPerceptionModule.java
                    • CognitiveModelLiteState.java
                    • MutablePatternRecognizerLite.java
                    • SharedSemanticMemoryLiteFactory.java
                    • ArrayBasedCognitiveModelInput.java
                    • SimplePatternRecognizerState.java
                  • CognitiveModelStateChangeEvent.java
                  • SemanticNetwork.java
                  • SemanticIdentifierMapEventType.java
                  • package-info.java
                  • CognitiveModuleState.java
                  • io
                    • SerializedModelHandler.java
                    • package-info.java
                    • CSVDefaultCognitiveModelLiteHandler.java
                    • ModelFileHandler.java
                  • DefaultCogxelFactory.java
                  • CognitiveModelInput.java
                  • CognitiveModuleFactory.java
                  • CognitiveModelFactory.java
                  • concurrent
                    • MultithreadedCognitiveModel.java
                    • ConcurrentCognitiveModule.java
                    • package-info.java
                    • AbstractConcurrentCognitiveModule.java
                    • MultithreadedCognitiveModelFactory.java
                  • CogxelFactory.java
                  • Activatable.java
                  • DefaultSemanticIdentifier.java
                  • SemanticIdentifierMapEvent.java
                  • CognitiveModelState.java
                  • CognitiveModuleSettings.java
                  • DefaultSemanticIdentifierMap.java
                  • ShareableCognitiveModuleSettings.java
        • build-tools.xml
      • TextExamples
        • build.xml
        • Test
          • examples
            • TextPipelineExampleTest.java
        • nbproject
          • project.xml
          • build-impl.xml
        • Source
          • examples
            • ValenceAnewExample.java
            • TextPipelineExample.java
        • build-tools.xml
    • Readme.md
    • Contributing.md
    • Tools
      • Configuration
        • netbeans
        • build-tools-impl.xml
        • checkstyle
          • foundry-checks.xml
        • pmd
          • foundry-ruleset.xml
      • PackageAll
        • pom.xml
    • nbproject
      • project.xml
      • build-impl.xml
    • License.txt
    • .gitignore
    • Dependencies
      • mtj-0.9.14
        • LICENSE.LGPL-2.1.txt
      • porter-stemmer-1.4
        • LICENSE.txt
      • mtj-1.0.3
        • LICENSE.txt
      • netlib-java-1.1.2
        • LICENSE.txt
      • junit-4.12
        • LICENSE.txt
      • copylibs-8.0
      • xstream-1.4.8
        • LICENSE.txt