org.jfree.chart.plot.SeriesRenderingOrder Java Examples

The following examples show how to use org.jfree.chart.plot.SeriesRenderingOrder. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. You may check out the related API usage on the sidebar.
Example #1
Source File: KafkaFT.java    From flink-perf with Apache License 2.0 5 votes vote down vote up 
private static JFreeChart createChart(XYDataset xydataset) {
	JFreeChart jfreechart = ChartFactory.createTimeSeriesChart("Flink Exactly-Once on Kafka with YARN Chaos Monkey", "Date", "Value", xydataset, true, true, false);
	XYPlot xyplot = (XYPlot) jfreechart.getPlot();

	XYLineAndShapeRenderer r0 = (XYLineAndShapeRenderer) xyplot.getRenderer(0);

	// draw data points as points
	r0.setSeriesShapesVisible(2, true);
	r0.setSeriesLinesVisible(2, true);
	// order elements as assed
	xyplot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);

	DateAxis dateaxis = (DateAxis) xyplot.getDomainAxis();

	Number first = xydataset.getX(0, 0);
	Minute minute = new Minute(new Date((Long)first));
	System.out.println("first = "+first);
	RelativeDateFormat relativedateformat = new RelativeDateFormat(minute.getFirstMillisecond());
	relativedateformat.setSecondFormatter(new DecimalFormat("00"));
	dateaxis.setDateFormatOverride(relativedateformat);


	//dateaxis.setDateFormatOverride(new SimpleDateFormat("mm:ss"));
	ValueAxis valueaxis = xyplot.getRangeAxis();
	valueaxis.setAutoRangeMinimumSize(1.0D);
	valueaxis.setLabel("Elements/Core");

	xyplot.getRenderer().setSeriesPaint(2, ChartColor.DARK_MAGENTA);
	return jfreechart;
}
Example #2
Source File: MsMsPlot.java    From mzmine3 with GNU General Public License v2.0 4 votes vote down vote up 
MsMsPlot(RawDataFile rawDataFile, MsMsVisualizerWindow visualizer, MsMsDataSet dataset,
    Range<Double> rtRange, Range<Double> mzRange) {

  super(ChartFactory.createXYLineChart("", "", "", null, PlotOrientation.VERTICAL, true, true,
      false), true, true, false, false, true);

  this.visualizer = visualizer;
  this.rawDataFile = rawDataFile;
  this.rtRange = rtRange;
  this.mzRange = mzRange;

  // initialize the chart by default time series chart from factory
  chart = getChart();
  chart.setBackgroundPaint(Color.white);

  // disable maximum size (we don't want scaling)
  // setMaximumDrawWidth(Integer.MAX_VALUE);
  // setMaximumDrawHeight(Integer.MAX_VALUE);

  // set the plot properties
  plot = chart.getXYPlot();
  plot.setBackgroundPaint(Color.white);
  plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
  plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);
  plot.setDomainGridlinePaint(gridColor);
  plot.setRangeGridlinePaint(gridColor);

  // Set the domain log axis
  xAxis = new NumberAxis("Retention time (min)");
  xAxis.setAutoRangeIncludesZero(false);
  xAxis.setNumberFormatOverride(rtFormat);
  xAxis.setUpperMargin(0.01);
  xAxis.setLowerMargin(0.01);
  plot.setDomainAxis(xAxis);

  // Set the range log axis
  yAxis = new NumberAxis("Precursor m/z");
  yAxis.setAutoRangeIncludesZero(false);
  yAxis.setNumberFormatOverride(mzFormat);
  yAxis.setUpperMargin(0.1);
  yAxis.setLowerMargin(0.1);
  plot.setRangeAxis(yAxis);

  // Set crosshair properties
  plot.setDomainCrosshairVisible(true);
  plot.setRangeCrosshairVisible(true);
  plot.setDomainCrosshairPaint(crossHairColor);
  plot.setRangeCrosshairPaint(crossHairColor);
  plot.setDomainCrosshairStroke(crossHairStroke);
  plot.setRangeCrosshairStroke(crossHairStroke);

  // Create renderers
  mainRenderer = new MsMsPlotRenderer();
  plot.setRenderer(0, mainRenderer);

  // title
  chartTitle = chart.getTitle();
  chartTitle.setMargin(5, 0, 0, 0);
  chartTitle.setFont(titleFont);
  chartSubTitle = new TextTitle();
  chartSubTitle.setFont(subTitleFont);
  chartSubTitle.setMargin(5, 0, 0, 0);
  chart.addSubtitle(chartSubTitle);

  // Add data sets;
  plot.setDataset(0, dataset);

  // set rendering order
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);

  peakDataRenderer = new PeakDataRenderer();


  // reset zoom history
  ZoomHistory history = getZoomHistory();
  if (history != null)
    history.clear();
}
Example #3
Source File: CombinedModulePlot.java    From mzmine3 with GNU General Public License v2.0 4 votes vote down vote up 
public void setPlot(RawDataFile dataFile, CombinedModuleVisualizerWindowController visualizer,
    Range<Double> rtRange, Range<Double> mzRange, AxisType xAxisType, AxisType yAxisType,
    String massList, Double noiseLevel, ColorScale colorScale) {

  this.visualizer = visualizer;
  this.dataFile = dataFile;
  this.rtRange = rtRange;
  this.mzRange = mzRange;
  this.noiseLevel = noiseLevel;
  this.colorScale = colorScale;
  this.massList = massList;

  chart = getChart();
  chart.setBackgroundPaint(Color.white);

  plot = chart.getXYPlot();
  plot.setBackgroundPaint(Color.white);
  plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);
  plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
  plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);
  plot.setDomainGridlinePaint(gridColor);
  plot.setRangeGridlinePaint(gridColor);
  plot.setDomainCrosshairVisible(true);
  plot.setRangeCrosshairVisible(true);
  plot.setDomainCrosshairPaint(crossHairColor);
  plot.setRangeCrosshairPaint(crossHairColor);
  plot.setDomainCrosshairStroke(crossHairStroke);
  plot.setRangeCrosshairStroke(crossHairStroke);

  defaultRenderer = new CombinedModuleDataPointRenderer(false, true);
  defaultRenderer.setTransparency(0.4f);
  LookupPaintScale scale = new LookupPaintScale(rtRange.lowerEndpoint(), rtRange.upperEndpoint(),
      new Color(0, 0, 0));
  defaultRenderer.setPaintScale(scale);

  NumberAxis xAxis = (NumberAxis) this.plot.getDomainAxis();
  if (xAxisType == AxisType.RETENTIONTIME) {
    setAxes(xAxis, xAxisType, rtFormat);
  } else {
    setAxes(xAxis, xAxisType, mzFormat);
  }
  NumberAxis yAxis = (NumberAxis) this.plot.getRangeAxis();
  setAxes(yAxis, yAxisType, mzFormat);
}
Example #4
Source File: HistogramChart.java    From mzmine3 with GNU General Public License v2.0 4 votes vote down vote up 
public HistogramChart() {
  super(ChartFactory.createHistogram("", // title
      "", // x-axis label
      "", // y-axis label
      null, // data set
      PlotOrientation.VERTICAL, // orientation
      true, // create legend
      false, // generate tooltips
      false // generate URLs
  ));

  // initialize the chart by default time series chart from factory
  chart = getChart();

  // title
  chartTitle = chart.getTitle();
  chartTitle.setFont(titleFont);
  chartTitle.setMargin(5, 0, 0, 0);

  chartSubTitle = new TextTitle();
  chartSubTitle.setFont(subTitleFont);
  chartSubTitle.setMargin(5, 0, 0, 0);
  chart.addSubtitle(chartSubTitle);

  // legend constructed by ChartFactory
  LegendTitle legend = chart.getLegend();
  legend.setItemFont(legendFont);
  legend.setFrame(BlockBorder.NONE);

  chart.setBackgroundPaint(Color.white);

  // disable maximum size (we don't want scaling)
  // setMaximumDrawWidth(Integer.MAX_VALUE);
  // setMaximumDrawHeight(Integer.MAX_VALUE);

  // set the plot properties
  plot = chart.getXYPlot();
  plot.setBackgroundPaint(Color.white);
  plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.REVERSE);
  plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);

  // set grid properties
  plot.setDomainGridlinePaint(gridColor);
  plot.setRangeGridlinePaint(gridColor);

  // set crosshair (selection) properties
  plot.setDomainCrosshairVisible(false);
  plot.setRangeCrosshairVisible(true);

  // set the logarithmic axis
  NumberAxis axisDomain = new HistogramDomainAxis();
  axisDomain.setMinorTickCount(1);
  axisDomain.setAutoRange(true);

  NumberAxis axisRange = new NumberAxis();
  axisRange.setMinorTickCount(1);
  axisRange.setAutoRange(true);

  plot.setDomainAxis(axisDomain);
  plot.setRangeAxis(axisRange);

  ClusteredXYBarRenderer renderer = new ClusteredXYBarRenderer();
  renderer.setMargin(marginSize);
  renderer.setShadowVisible(false);
  plot.setRenderer(renderer);

  // this.setMinimumSize(new Dimension(400, 400));
  // this.setDismissDelay(Integer.MAX_VALUE);
  // this.setInitialDelay(0);

  // reset zoom history
  ZoomHistory history = getZoomHistory();
  if (history != null)
    history.clear();
}
Example #5
Source File: ScatterPlotChart.java    From mzmine3 with GNU General Public License v2.0 4 votes vote down vote up 
public ScatterPlotChart(ScatterPlotWindow window, ScatterPlotTopPanel topPanel,
    PeakList peakList) {

  super(null);

  this.window = window;
  this.peakList = peakList;
  this.topPanel = topPanel;

  // initialize the chart by default time series chart from factory
  chart = ChartFactory.createXYLineChart("", // title
      "", // x-axis label
      "", // y-axis label
      null, // data set
      PlotOrientation.VERTICAL, // orientation
      false, // create legend
      false, // generate tooltips
      false // generate URLs
  );

  chart.setBackgroundPaint(Color.white);
  setChart(chart);

  // disable maximum size (we don't want scaling)
  // setMaximumDrawWidth(Integer.MAX_VALUE);
  // setMaximumDrawHeight(Integer.MAX_VALUE);

  // set the plot properties
  plot = chart.getXYPlot();
  plot.setBackgroundPaint(Color.white);
  plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
  plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);
  plot.setDomainGridlinePaint(gridColor);
  plot.setRangeGridlinePaint(gridColor);

  // Set the domain log axis
  LogAxis logAxisDomain = new LogAxis();
  logAxisDomain.setMinorTickCount(1);
  logAxisDomain.setNumberFormatOverride(MZmineCore.getConfiguration().getIntensityFormat());
  logAxisDomain.setAutoRange(true);
  plot.setDomainAxis(logAxisDomain);

  // Set the range log axis
  LogAxis logAxisRange = new LogAxis();
  logAxisRange.setMinorTickCount(1);
  logAxisRange.setNumberFormatOverride(MZmineCore.getConfiguration().getIntensityFormat());
  logAxisRange.setAutoRange(true);
  plot.setRangeAxis(logAxisRange);

  // Set crosshair properties
  plot.setDomainCrosshairVisible(true);
  plot.setRangeCrosshairVisible(true);
  plot.setDomainCrosshairPaint(crossHairColor);
  plot.setRangeCrosshairPaint(crossHairColor);
  plot.setDomainCrosshairStroke(crossHairStroke);
  plot.setRangeCrosshairStroke(crossHairStroke);

  // Create data sets;
  mainDataSet = new ScatterPlotDataSet(peakList);
  plot.setDataset(0, mainDataSet);
  diagonalLineDataset = new DiagonalLineDataset();
  plot.setDataset(1, diagonalLineDataset);

  // Create renderers
  mainRenderer = new ScatterPlotRenderer();
  plot.setRenderer(0, mainRenderer);
  diagonalLineRenderer = new DiagonalLineRenderer();
  plot.setRenderer(1, diagonalLineRenderer);

  // Set tooltip properties
  // ttm = new ComponentToolTipManager();
  // ttm.registerComponent(this);
  // setDismissDelay(Integer.MAX_VALUE);
  // setInitialDelay(0);

  // add items to popup menu TODO: add other Show... items
  ContextMenu popupMenu = getContextMenu();
  // popupMenu.addSeparator();
  // GUIUtils.addMenuItem(popupMenu, "Show Chromatogram", this, "TIC");

  // reset zoom history
  ZoomHistory history = getZoomHistory();
  if (history != null)
    history.clear();
}
Example #6
Source File: MsMsPlot.java    From mzmine2 with GNU General Public License v2.0 4 votes vote down vote up 
MsMsPlot(final ActionListener listener, RawDataFile rawDataFile, MsMsVisualizerWindow visualizer,
    MsMsDataSet dataset, Range<Double> rtRange, Range<Double> mzRange) {

  super(null, true);

  this.visualizer = visualizer;
  this.rawDataFile = rawDataFile;
  this.rtRange = rtRange;
  this.mzRange = mzRange;

  // initialize the chart by default time series chart from factory
  chart = ChartFactory.createXYLineChart("", // title
      "", // x-axis label
      "", // y-axis label
      null, // data set
      PlotOrientation.VERTICAL, // orientation
      true, // create legend
      false, // generate tooltips
      false // generate URLs
  );

  chart.setBackgroundPaint(Color.white);
  setChart(chart);

  // disable maximum size (we don't want scaling)
  setMaximumDrawWidth(Integer.MAX_VALUE);
  setMaximumDrawHeight(Integer.MAX_VALUE);

  // set the plot properties
  plot = chart.getXYPlot();
  plot.setBackgroundPaint(Color.white);
  plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
  plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);
  plot.setDomainGridlinePaint(gridColor);
  plot.setRangeGridlinePaint(gridColor);

  // Set the domain log axis
  xAxis = new NumberAxis("Retention time (min)");
  xAxis.setAutoRangeIncludesZero(false);
  xAxis.setNumberFormatOverride(rtFormat);
  xAxis.setUpperMargin(0.01);
  xAxis.setLowerMargin(0.01);
  plot.setDomainAxis(xAxis);

  // Set the range log axis
  yAxis = new NumberAxis("Precursor m/z");
  yAxis.setAutoRangeIncludesZero(false);
  yAxis.setNumberFormatOverride(mzFormat);
  yAxis.setUpperMargin(0.1);
  yAxis.setLowerMargin(0.1);
  plot.setRangeAxis(yAxis);

  // Set crosshair properties
  plot.setDomainCrosshairVisible(true);
  plot.setRangeCrosshairVisible(true);
  plot.setDomainCrosshairPaint(crossHairColor);
  plot.setRangeCrosshairPaint(crossHairColor);
  plot.setDomainCrosshairStroke(crossHairStroke);
  plot.setRangeCrosshairStroke(crossHairStroke);

  // Create renderers
  mainRenderer = new MsMsPlotRenderer();
  plot.setRenderer(0, mainRenderer);

  // title
  chartTitle = chart.getTitle();
  chartTitle.setMargin(5, 0, 0, 0);
  chartTitle.setFont(titleFont);
  chartSubTitle = new TextTitle();
  chartSubTitle.setFont(subTitleFont);
  chartSubTitle.setMargin(5, 0, 0, 0);
  chart.addSubtitle(chartSubTitle);

  // Add data sets;
  plot.setDataset(0, dataset);

  // set rendering order
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);

  peakDataRenderer = new PeakDataRenderer();

  // Add EMF and EPS options to the save as menu
  JPopupMenu popupMenu = getPopupMenu();
  JMenuItem saveAsMenu = (JMenuItem) popupMenu.getComponent(3);
  GUIUtils.addMenuItem(saveAsMenu, "EMF...", this, "SAVE_EMF");
  GUIUtils.addMenuItem(saveAsMenu, "EPS...", this, "SAVE_EPS");

  // Register for mouse-wheel events
  addMouseWheelListener(this);

  // reset zoom history
  ZoomHistory history = getZoomHistory();
  if (history != null)
    history.clear();
}
Example #7
Source File: HistogramChart.java    From mzmine2 with GNU General Public License v2.0 4 votes vote down vote up 
public HistogramChart() {
  super(null, true);

  // initialize the chart by default time series chart from factory
  chart = ChartFactory.createHistogram("", // title
      "", // x-axis label
      "", // y-axis label
      null, // data set
      PlotOrientation.VERTICAL, // orientation
      true, // create legend
      false, // generate tooltips
      false // generate URLs
  );

  // title
  chartTitle = chart.getTitle();
  chartTitle.setFont(titleFont);
  chartTitle.setMargin(5, 0, 0, 0);

  chartSubTitle = new TextTitle();
  chartSubTitle.setFont(subTitleFont);
  chartSubTitle.setMargin(5, 0, 0, 0);
  chart.addSubtitle(chartSubTitle);

  // legend constructed by ChartFactory
  LegendTitle legend = chart.getLegend();
  legend.setItemFont(legendFont);
  legend.setFrame(BlockBorder.NONE);

  chart.setBackgroundPaint(Color.white);
  setChart(chart);

  // disable maximum size (we don't want scaling)
  setMaximumDrawWidth(Integer.MAX_VALUE);
  setMaximumDrawHeight(Integer.MAX_VALUE);

  // set the plot properties
  plot = chart.getXYPlot();
  plot.setBackgroundPaint(Color.white);
  plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.REVERSE);
  plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);

  // set grid properties
  plot.setDomainGridlinePaint(gridColor);
  plot.setRangeGridlinePaint(gridColor);

  // set crosshair (selection) properties
  plot.setDomainCrosshairVisible(false);
  plot.setRangeCrosshairVisible(true);

  // set the logarithmic axis
  NumberAxis axisDomain = new HistogramDomainAxis();
  axisDomain.setMinorTickCount(1);
  axisDomain.setAutoRange(true);

  NumberAxis axisRange = new NumberAxis();
  axisRange.setMinorTickCount(1);
  axisRange.setAutoRange(true);

  plot.setDomainAxis(axisDomain);
  plot.setRangeAxis(axisRange);

  ClusteredXYBarRenderer renderer = new ClusteredXYBarRenderer();
  renderer.setMargin(marginSize);
  renderer.setShadowVisible(false);
  plot.setRenderer(renderer);

  this.setMinimumSize(new Dimension(400, 400));
  this.setDismissDelay(Integer.MAX_VALUE);
  this.setInitialDelay(0);


  // reset zoom history
  ZoomHistory history = getZoomHistory();
  if (history != null)
    history.clear();
}
Example #8
Source File: ScatterPlotChart.java    From mzmine2 with GNU General Public License v2.0 4 votes vote down vote up 
public ScatterPlotChart(ScatterPlotWindow window, ScatterPlotTopPanel topPanel,
    PeakList peakList) {

  super(null, true);

  this.window = window;
  this.peakList = peakList;
  this.topPanel = topPanel;

  // initialize the chart by default time series chart from factory
  chart = ChartFactory.createXYLineChart("", // title
      "", // x-axis label
      "", // y-axis label
      null, // data set
      PlotOrientation.VERTICAL, // orientation
      false, // create legend
      false, // generate tooltips
      false // generate URLs
  );

  chart.setBackgroundPaint(Color.white);
  setChart(chart);

  // disable maximum size (we don't want scaling)
  setMaximumDrawWidth(Integer.MAX_VALUE);
  setMaximumDrawHeight(Integer.MAX_VALUE);

  // set the plot properties
  plot = chart.getXYPlot();
  plot.setBackgroundPaint(Color.white);
  plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
  plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
  plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD);
  plot.setDomainGridlinePaint(gridColor);
  plot.setRangeGridlinePaint(gridColor);

  // Set the domain log axis
  LogAxis logAxisDomain = new LogAxis();
  logAxisDomain.setMinorTickCount(1);
  logAxisDomain.setNumberFormatOverride(MZmineCore.getConfiguration().getIntensityFormat());
  logAxisDomain.setAutoRange(true);
  plot.setDomainAxis(logAxisDomain);

  // Set the range log axis
  LogAxis logAxisRange = new LogAxis();
  logAxisRange.setMinorTickCount(1);
  logAxisRange.setNumberFormatOverride(MZmineCore.getConfiguration().getIntensityFormat());
  logAxisRange.setAutoRange(true);
  plot.setRangeAxis(logAxisRange);

  // Set crosshair properties
  plot.setDomainCrosshairVisible(true);
  plot.setRangeCrosshairVisible(true);
  plot.setDomainCrosshairPaint(crossHairColor);
  plot.setRangeCrosshairPaint(crossHairColor);
  plot.setDomainCrosshairStroke(crossHairStroke);
  plot.setRangeCrosshairStroke(crossHairStroke);

  // Create data sets;
  mainDataSet = new ScatterPlotDataSet(peakList);
  plot.setDataset(0, mainDataSet);
  diagonalLineDataset = new DiagonalLineDataset();
  plot.setDataset(1, diagonalLineDataset);

  // Create renderers
  mainRenderer = new ScatterPlotRenderer();
  plot.setRenderer(0, mainRenderer);
  diagonalLineRenderer = new DiagonalLineRenderer();
  plot.setRenderer(1, diagonalLineRenderer);

  // Set tooltip properties
  ttm = new ComponentToolTipManager();
  ttm.registerComponent(this);
  setDismissDelay(Integer.MAX_VALUE);
  setInitialDelay(0);

  // add items to popup menu TODO: add other Show... items
  JPopupMenu popupMenu = getPopupMenu();
  popupMenu.addSeparator();
  GUIUtils.addMenuItem(popupMenu, "Show Chromatogram", this, "TIC");

  // Add EMF and EPS options to the save as menu
  JMenuItem saveAsMenu = (JMenuItem) popupMenu.getComponent(3);
  GUIUtils.addMenuItem(saveAsMenu, "EMF...", this, "SAVE_EMF");
  GUIUtils.addMenuItem(saveAsMenu, "EPS...", this, "SAVE_EPS");

  // reset zoom history
  ZoomHistory history = getZoomHistory();
  if (history != null)
    history.clear();
}