Java Code Examples for org.apache.jena.rdf.model.Model#remove()

private Set<URI> filterInboundReferences(final URI uri, final Model model) {
    final String withSlash = withSlash(uri).toString();
    final String withoutSlash = withoutSlash(uri).toString();
    final Set<URI> inboundMembers = new HashSet<>();
    final List<Statement> removeList = new ArrayList<>();
    for (final StmtIterator inbound = model.listStatements(); inbound.hasNext(); ) {
        final Statement s = inbound.next();
        final String subject = s.getSubject().toString();
        if (!subject.equals(withSlash) && !subject.equals(withoutSlash)) {
            removeList.add(s);
            logger.trace("Filtering inbound reference: {}", s);
            inboundMembers.add(URI.create(subject));
        }
    }

    model.remove(removeList);
    return inboundMembers;
}
 

/**
 * Filter out the binary resource references from the model
 * @param uri the URI for the resource
 * @param model the RDF Model of the resource
 * @return the RDF model with no binary references
 * @throws FcrepoOperationFailedException
 * @throws IOException
 */
private void filterBinaryReferences(final URI uri, final Model model) throws IOException,
        FcrepoOperationFailedException {

    final List<Statement> removeList = new ArrayList<>();
    for (final StmtIterator it = model.listStatements(); it.hasNext();) {
        final Statement s = it.nextStatement();

        final RDFNode obj = s.getObject();
        if (obj.isResource() && obj.toString().startsWith(repositoryRoot.toString())
                && !s.getPredicate().toString().equals(REPOSITORY_NAMESPACE + "hasTransactionProvider")) {
            try (final FcrepoResponse resp = client().head(URI.create(obj.toString())).disableRedirects()
                    .perform()) {
                checkValidResponse(resp, URI.create(obj.toString()), config.getUsername());
                final List<URI> linkHeaders = resp.getLinkHeaders("type");
                if (linkHeaders.contains(binaryURI)) {
                    removeList.add(s);
                }
            }
        }
    }

    model.remove(removeList);
}
 

/**
 * Removes statements from the provided model that affect triples that need not be (and indeed
 * cannot be) modified directly through PUT, POST or PATCH requests to fedora.
 *
 * Certain triples included in a resource from fedora cannot be explicitly stored, but because
 * they're derived from other content that *can* be stored will still appear identical when the
 * other RDF and content is ingested.  Examples include those properties that reflect innate
 * characteristics of binary resources like file size and message digest,  Or triples that
 * represent characteristics of rdf resources like the number of children, whether it has
 * versions and some of the types.
 *
 * @param model the RDF statements about an exported resource
 * @return the provided model updated to omit statements that may not be updated directly through
 *         the fedora API
 * @throws IOException
 * @throws FcrepoOperationFailedException
 */
private Model sanitize(final Model model) throws IOException, FcrepoOperationFailedException {
    final List<Statement> remove = new ArrayList<>();
    for (final StmtIterator it = model.listStatements(); it.hasNext(); ) {
        final Statement s = it.nextStatement();

        if ((s.getPredicate().getNameSpace().equals(REPOSITORY_NAMESPACE) && !relaxedPredicate(s.getPredicate()))
                || s.getSubject().getURI().endsWith("fcr:export?format=jcr/xml")
                || s.getSubject().getURI().equals(REPOSITORY_NAMESPACE + "jcr/xml")
                || s.getPredicate().equals(DESCRIBEDBY)
                || s.getPredicate().equals(CONTAINS)
                || s.getPredicate().equals(HAS_MESSAGE_DIGEST)
                || (s.getPredicate().equals(RDF_TYPE) && forbiddenType(s.getResource()))) {
            remove.add(s);
        } else if (s.getObject().isResource()) {
            // make sure that referenced repository objects exist
            final String obj = s.getResource().toString();
            if (obj.startsWith(repositoryRoot.toString())) {
                ensureExists(URI.create(obj));
            }
        }
    }
    return model.remove(remove);
}
 

@Override
public void activate(final Collection<JenaPosLengthMatch> matches) throws IOException {
	final Model model = driver.getModel();
	final Property lengthProperty = model.getProperty(BASE_PREFIX + LENGTH);

	for (final JenaPosLengthMatch match : matches) {
		final Resource segment = match.getSegment();
		final int length = match.getLength().getInt();
		final int newLength = -length + 1;

		final Selector selector = new SimpleSelector(segment, lengthProperty, (RDFNode) null);
		final StmtIterator statementsToRemove = model.listStatements(selector);
		if (statementsToRemove.hasNext()) {
			final Statement oldStatement = statementsToRemove.next();
			model.remove(oldStatement);
		}
		
		final Statement newStatement = model.createLiteralStatement(segment, lengthProperty, newLength);
		model.add(newStatement);
	}
}
 

@Override
public void activate(final Collection<JenaPosLengthInjectMatch> matches) throws IOException {
	final Model model = driver.getModel();
	final Property lengthProperty = model.getProperty(BASE_PREFIX + LENGTH);

	for (final JenaPosLengthInjectMatch match : matches) {
		final Resource segment = match.getSegment();
		final Selector selector = new SimpleSelector(segment, lengthProperty, (RDFNode) null);
		final StmtIterator oldStatements = model.listStatements(selector);
		if (!oldStatements.hasNext()) {
			continue;

		}
		final Statement oldStatement = oldStatements.next();
		model.remove(oldStatement);
		final Statement newStatement = model.createLiteralStatement(segment, lengthProperty, 0);
		model.add(newStatement);
	}
}
 

@Override
public void activate(final Collection<JenaConnectedSegmentsMatch> matches) throws IOException {
	final Model model = driver.getModel();
	final Property connectsToProperty = model.getProperty(BASE_PREFIX + ModelConstants.LENGTH);

	for (final JenaConnectedSegmentsMatch match : matches) {
		final Resource segment2 = match.getSegment2();

		// delete segment2 by removing all (segment2, _, _) and (_, _, segment2) triples
		final Collection<Statement> statementsToRemove = new ArrayList<>();

		final Selector selectorOutgoingEdges = new SimpleSelector(segment2, null, (RDFNode) null);
		final StmtIterator statementsOutgoingEdges = model.listStatements(selectorOutgoingEdges);
		while (statementsOutgoingEdges.hasNext()) {
			statementsToRemove.add(statementsOutgoingEdges.next());
		}
		final Selector selectorIncomingEdges = new SimpleSelector(null, null, segment2);
		final StmtIterator statementsIncomingEdges = model.listStatements(selectorIncomingEdges);
		while (statementsIncomingEdges.hasNext()) {
			statementsToRemove.add(statementsIncomingEdges.next());
		}
		for (final Statement statement : statementsToRemove) {
			model.remove(statement);
		}

		// insert (segment1)-[:connectsTo]->(segment3) edge
		model.add(model.createStatement(match.getSegment1(), connectsToProperty, match.getSegment3()));
	}
}
 

@Override
public void activate(final Collection<JenaSwitchSetMatch> matches) throws IOException {
	final Model model = driver.getModel();
	final Property currentPositionProperty = model.getProperty(BASE_PREFIX + CURRENTPOSITION);

	for (final JenaSwitchSetMatch match : matches) {
		final Resource sw = match.getSw();

		model.remove(sw, currentPositionProperty, match.getCurrentPosition());
		model.add(sw, currentPositionProperty, match.getPosition());
	}
}
 

@Override
public void activate(final Collection<JenaSwitchSetInjectMatch> matches) {
	final Model model = driver.getModel();
	final Property currentPositionProperty = model.getProperty(BASE_PREFIX + CURRENTPOSITION);

	for (final JenaSwitchSetInjectMatch match : matches) {
		final Resource sw = match.getSw();
		
		final Selector selector = new SimpleSelector(sw, currentPositionProperty, (RDFNode) null);
		final StmtIterator statementsToRemove = model.listStatements(selector);
		if (!statementsToRemove.hasNext()) {
			continue;

		}

		// delete old statement
		final Statement oldStatement = statementsToRemove.next();
		model.remove(oldStatement);

		// get next enum value
		final Resource currentPositionResource = oldStatement.getObject().asResource();
		final String currentPositionRDFString = currentPositionResource.getLocalName();
		final String currentPositionString = RdfHelper.removePrefix(Position.class, currentPositionRDFString);
		final Position currentPosition = Position.valueOf(currentPositionString);
		final Position newCurrentPosition = Position.values()[(currentPosition.ordinal() + 1) % Position.values().length];
		final String newCurrentPositionString = RdfHelper.addEnumPrefix(newCurrentPosition);
		final Resource newCurrentPositionResource = model.createResource(BASE_PREFIX + newCurrentPositionString);

		// set new value
		final Statement newStatement = model.createLiteralStatement(sw, currentPositionProperty, newCurrentPositionResource);
		model.add(newStatement);

	}
}
 

@Override
public void activate(final Collection<JenaConnectedSegmentsInjectMatch> matches) throws Exception {
	final Model model = driver.getModel();

	final Property length = model.getProperty(BASE_PREFIX + ModelConstants.LENGTH);
	final Property connectsTo = model.getProperty(BASE_PREFIX + ModelConstants.CONNECTS_TO);
	final Property monitoredBy = model.getProperty(BASE_PREFIX + ModelConstants.MONITORED_BY);
	final Property segmentType = model.getProperty(BASE_PREFIX + ModelConstants.SEGMENT);

	for (final JenaConnectedSegmentsInjectMatch match : matches) {
		// create (segment2) node
		final Long newVertexId = driver.generateNewVertexId();
		final Resource segment2 = model.createResource(BASE_PREFIX + ID_PREFIX + newVertexId);
		model.add(model.createStatement(segment2, RDF.type, segmentType));
		model.add(model.createLiteralStatement(segment2, length, TrainBenchmarkConstants.DEFAULT_SEGMENT_LENGTH));

		// (segment1)-[:connectsTo]->(segment2)
		model.add(match.getSegment1(), connectsTo, segment2);
		// (segment2)-[:connectsTo]->(segment3)
		model.add(segment2, connectsTo, match.getSegment3());
		// (segment2)-[:monitoredBy]->(sensor)
		model.add(segment2, monitoredBy, match.getSensor());

		// remove (segment1)-[:connectsTo]->(segment3)
		model.remove(match.getSegment1(), connectsTo, match.getSegment3());
	}
}
 

@Override
public void activate(final Collection<JenaSemaphoreNeighborInjectMatch> matches) throws IOException {
	final Model model = driver.getModel();
	final Property entry = model.getProperty(RdfConstants.BASE_PREFIX + ModelConstants.ENTRY);
	for (JenaSemaphoreNeighborInjectMatch match : matches) {
		model.remove(match.getRoute(), entry, match.getSemaphore());
	}
}
 

@Override
public void activate(final Collection<JenaRouteSensorInjectMatch> routeSensorInjectMatchsMatches) throws IOException {
	final Model model = driver.getModel();
	final Property requires = model.getProperty(BASE_PREFIX + ModelConstants.REQUIRES);
	
	for (final JenaRouteSensorInjectMatch rsim : routeSensorInjectMatchsMatches) {
		model.remove(rsim.getRoute(), requires, rsim.getSensor()); 
	}

}
 

@Test
void integration_test() {

    Model mainModel = ModelFactory.createDefaultModel();
    final URL dbpediaContentUrl = getClass().getClassLoader().getResource("test_services/dbpedia.ttl");
    if(dbpediaContentUrl != null) {
        mainModel.read(dbpediaContentUrl.toString(), "TTL");
    }

    Model citiesModel = ModelFactory.createDefaultModel();
    final URL citiesContentUrl = getClass().getClassLoader().getResource("test_services/cities.ttl");
    if(citiesContentUrl != null) {
        citiesModel.read(citiesContentUrl.toString(), "TTL");
    }

    Model expectedModel = ModelFactory.createDefaultModel();
    expectedModel.add(mainModel).add(citiesModel);

    Dataset ds = DatasetFactory.createTxnMem();
    ds.setDefaultModel(citiesModel);
    FusekiServer server = FusekiServer.create()
            .add("/ds", ds)
            .build()
            .start();



    HGQLConfig externalConfig = fromClasspathConfig("test_services/externalconfig.json");

    Controller externalController = new Controller();
    externalController.start(externalConfig);

    HGQLConfig config = fromClasspathConfig("test_services/mainconfig.json");

    Controller controller = new Controller();
    controller.start(config);

    ObjectMapper mapper = new ObjectMapper();
    ObjectNode bodyParam = mapper.createObjectNode();

    bodyParam.put("query", "{\n" +
            "  Person_GET {\n" +
            "    _id\n" +
            "    label\n" +
            "    name\n" +
            "    birthPlace {\n" +
            "      _id\n" +
            "      label\n" +
            "    }\n" +
            "    \n" +
            "  }\n" +
            "  City_GET {\n" +
            "    _id\n" +
            "    label}\n" +
            "}");

    Model returnedModel = ModelFactory.createDefaultModel();

    try {
        HttpResponse<InputStream> response = Unirest.post("http://localhost:8080/graphql")
                .header("Accept", "application/rdf+xml")
                .body(bodyParam.toString())
                .asBinary();


        returnedModel.read(response.getBody(), "RDF/XML");

    } catch (UnirestException e) {
        e.printStackTrace();
    }

    Resource res = ResourceFactory.createResource("http://hypergraphql.org/query");
    Selector sel = new SelectorImpl(res, null, (Object) null);
    StmtIterator iterator = returnedModel.listStatements(sel);
    Set<Statement> statements = new HashSet<>();
    while (iterator.hasNext()) {
        statements.add(iterator.nextStatement());
    }

    for (Statement statement : statements) {
        returnedModel.remove(statement);
    }

    StmtIterator iterator2 = expectedModel.listStatements();
    while (iterator2.hasNext()) {
        assertTrue(returnedModel.contains(iterator2.next()));
    }

    assertTrue(expectedModel.isIsomorphicWith(returnedModel));
    externalController.stop();
    controller.stop();
    server.stop();
}
 

@Test
void integration_test() {

    Model mainModel = ModelFactory.createDefaultModel();
    final URL dbpediaContentUrl = getClass().getClassLoader().getResource("test_services/dbpedia.ttl");
    if(dbpediaContentUrl != null) {
        mainModel.read(dbpediaContentUrl.toString(), "TTL");
    }

    Model citiesModel = ModelFactory.createDefaultModel();
    final URL citiesContentUrl = getClass().getClassLoader().getResource("test_services/cities.ttl");
    if(citiesContentUrl != null) {
        citiesModel.read(citiesContentUrl.toString(), "TTL");
    }

    Model expectedModel = ModelFactory.createDefaultModel();
    expectedModel.add(mainModel).add(citiesModel);

    Dataset ds = DatasetFactory.createTxnMem();
    ds.setDefaultModel(citiesModel);
    FusekiServer server = FusekiServer.create()
            .add("/ds", ds)
            .build()
            .start();

    HGQLConfig externalConfig = HGQLConfig.fromClasspathConfig("test_services/externalconfig.json");

    Controller externalController = new Controller();
    externalController.start(externalConfig);

    HGQLConfig config = HGQLConfig.fromClasspathConfig("test_services/mainconfig.json");

    Controller controller = new Controller();
    controller.start(config);

    ObjectMapper mapper = new ObjectMapper();
    ObjectNode bodyParam = mapper.createObjectNode();

    bodyParam.put("query", "{\n" +
            "  Person_GET {\n" +
            "    _id\n" +
            "    label\n" +
            "    name\n" +
            "    birthPlace {\n" +
            "      _id\n" +
            "      label\n" +
            "    }\n" +
            "    \n" +
            "  }\n" +
            "  City_GET {\n" +
            "    _id\n" +
            "    label}\n" +
            "}");

    Model returnedModel = ModelFactory.createDefaultModel();

    try {
        HttpResponse<InputStream> response = Unirest.post("http://localhost:8080/graphql")
                .header("Accept", "application/rdf+xml")
                .body(bodyParam.toString())
                .asBinary();


        returnedModel.read(response.getBody(), "RDF/XML");

    } catch (UnirestException e) {
        e.printStackTrace();
    }

    Resource res = ResourceFactory.createResource("http://hypergraphql.org/query");
    Selector sel = new SelectorImpl(res, null, (Object) null);
    StmtIterator iterator = returnedModel.listStatements(sel);
    Set<Statement> statements = new HashSet<>();
    while (iterator.hasNext()) {
        statements.add(iterator.nextStatement());
    }

    for (Statement statement : statements) {
        returnedModel.remove(statement);
    }

    StmtIterator iterator2 = expectedModel.listStatements();
    while (iterator2.hasNext()) {
        assertTrue(returnedModel.contains(iterator2.next()));
    }

    assertTrue(expectedModel.isIsomorphicWith(returnedModel));
    externalController.stop();
    controller.stop();
    server.stop();
}