Java Code Examples for java.io.Writer#flush()

private File createSampleFile()
    throws IOException
{
    File file = File.createTempFile("obs-android-sdk-", ".txt");
    file.deleteOnExit();
    
    Writer writer = new OutputStreamWriter(new FileOutputStream(file));
    for (int i = 0; i < 1000000; i++)
    {
        writer.write(UUID.randomUUID() + "\n\n");
        writer.write(UUID.randomUUID() + "\n\n");
    }
    writer.flush();
    writer.close();
    
    return file;
}
 

@Nullable
public static File buildCrashLog(@NonNull Context context, @NonNull String stackTrace) {
    try {
        if (stackTrace.length() == 0) return null;

        File crashLog = new File(context.getCacheDir(), CRASHLOG);
        String deviceInfo = DeviceHelper.getDeviceInfoForCrashReport(context);
        Writer out = new BufferedWriter(new OutputStreamWriter(
                new FileOutputStream(crashLog), "UTF8"));
        out.append(deviceInfo).append(stackTrace);
        out.flush();
        out.close();
        return crashLog;
    } catch (Exception e) {
        LogUtil.e(Log.getStackTraceString(e));
        return null;
    }
}
 

/**
 * Allows this writer to be used within the closure, ensuring that it
 * is flushed and closed before this method returns.
 *
 * @param writer  the writer which is used and then closed
 * @param closure the closure that the writer is passed into
 * @return the value returned by the closure
 * @throws IOException if an IOException occurs.
 * @since 1.5.2
 */
public static <T> T withWriter(Writer writer, @ClosureParams(FirstParam.class) Closure<T> closure) throws IOException {
    try {
        T result = closure.call(writer);

        try {
            writer.flush();
        } catch (IOException e) {
            // try to continue even in case of error
        }
        Writer temp = writer;
        writer = null;
        temp.close();
        return result;
    } finally {
        closeWithWarning(writer);
    }
}
 

/**
 * Processes the template
 *
 * @param varMap variable map
 * @param out    the writer to output the text to.
 */
@Override
public void process(Map<String, String> varMap, Writer out)
{
   try
   {
      if (templateText == null)
      {
         templateText = Utils.readFileIntoString(input);
      }
      String replacedString = replace(varMap);
      out.write(replacedString);
      out.flush();
   }
   catch (IOException e)
   {
      e.printStackTrace();
   }
}
 

static void exportAll(String filename, boolean withHeader, String db_passwd) throws IOException{
	Database db = openDatabase( filename, db_passwd ) ;

	try{
		for(String tableName : db.getTableNames()){
			String csvName = tableName + ".csv";
			Writer csv = new FileWriter(csvName);
			try{
				System.out.println(String.format("Exporting '%s' to %s/%s",
						tableName, System.getProperty("user.dir"), csvName));
				int rows = export(db, tableName, csv, withHeader);
				System.out.println(String.format("%d rows exported", rows));
			}finally{
				try{
					csv.flush();
					csv.close();
				}catch(IOException ex){}
			}
		}
	}finally{
		db.close();
	}

}
 

@Transactional(readOnly = true)
public void index(CmsSite site, String tpl, Map<String, Object> data)
		throws IOException, TemplateException {
	long time = System.currentTimeMillis();
	File f = new File(getIndexPath(site));
	File parent = f.getParentFile();
	if (!parent.exists()) {
		parent.mkdirs();
	}
	Writer out = null;
	try {
		// FileWriter不能指定编码确实是个问题，只能用这个代替了。
		out = new OutputStreamWriter(new FileOutputStream(f), UTF8);
		Template template = conf.getTemplate(tpl);
		template.process(data, out);
	} finally {
		if (out != null) {
			out.flush();
			out.close();
		}
	}
	time = System.currentTimeMillis() - time;
	log.info("create index page, in {} ms", time);
}
 

public StreamingOutput getRepourLogsForBuild(String repourLog) {
    if (repourLog == null)
        return null;

    return outputStream -> {
        Writer writer = new BufferedWriter(new OutputStreamWriter(outputStream));
        writer.write(repourLog);
        writer.flush();
    };
}
 

@Override
public void writeTo(List<AppointmentDTO> t, Class<?> type, Type genericType, Annotation[] annotations,
		MediaType mediaType, MultivaluedMap<String, Object> httpHeaders, OutputStream out)
		throws IOException
{
	Writer writer = new OutputStreamWriter(out, UTF_8);
	JSONArray rr = new JSONArray();
	for (AppointmentDTO dto : t) {
		rr.put(AppointmentParamConverter.json(dto));
	}
	writer.write(new JSONObject().put(ROOT, rr).toString());
	writer.flush();
}
 

@Override
public boolean add(T log) {
	boolean ret = false;

	String msg = MiscUtil.stringify(log);

	if(msg.contains(MiscUtil.LINE_SEPARATOR)) {
		msg = msg.replace(MiscUtil.LINE_SEPARATOR, MiscUtil.ESCAPE_STR + MiscUtil.LINE_SEPARATOR);
	}

	synchronized(this) {
		checkFileStatus();

		Writer writer = mWriter;

		if(writer != null) {
			try {
				writer.write(msg + MiscUtil.LINE_SEPARATOR);
				
				if(mFileBufferSizeBytes == 0) {
					writer.flush();
				}

				ret = true;
			} catch(IOException excp) {
				mLogger.warn("LocalFileLogBuffer.add(): write failed", excp);

				closeFile();
			}
		}
	}

	return ret;
}
 

/**
 * Renders an HTTP response that will cause the browser to POST the specified values to an url.
 * @param url the url where to perform the POST.
 * @param response the {@link HttpServletResponse}.
 * @param values the values to include in the POST.
 * @throws IOException thrown if an IO error occurs.
 */
public static void postUsingBrowser(
    String url, HttpServletResponse response, Map<String, String> values) throws IOException {

  response.setContentType("text/html");
  @SuppressWarnings("resource")
  Writer writer = response.getWriter();
  writer.write(
      "<html><head></head><body><form id='TheForm' action='"
          + StringEscapeUtils.escapeHtml(url)
          + "' method='POST'>");

  for (String key : values.keySet()) {
    String encodedKey = StringEscapeUtils.escapeHtml(key);
    String encodedValue = StringEscapeUtils.escapeHtml(values.get(key));
    writer.write(
        "<input type='hidden' id='"
            + encodedKey
            + "' name='"
            + encodedKey
            + "' value='"
            + encodedValue
            + "'/>");
  }

  writer.write(
      "</form><script type='text/javascript'>document.getElementById('TheForm').submit();</script></body></html>");
  writer.flush();

  response.setHeader("Cache-Control", "no-cache, no-store");
  response.setHeader("Pragma", "no-cache");
}
 

/**
 * flush Writer
 * 
 * @param br
 */
public static void flushWriter(Writer wr) {
	if (wr != null) {
		try {
			wr.flush();
		} catch (IOException e) {
			e.printStackTrace();
		}
	}
}
 

/**
 * 
 */
private void createManifestEntry(String mimetype) throws IOException
{
	ExportZipEntry manifestEntry = createEntry("META-INF/manifest.xml");
	Writer manifestWriter = null;
	try
	{
		manifestWriter = manifestEntry.getWriter();
		manifestWriter.write(PROLOG);
		manifestWriter.write("<!DOCTYPE manifest:manifest PUBLIC \"-//OpenOffice.org//DTD Manifest 1.0//EN\" \"Manifest.dtd\">\n");
		manifestWriter.write("<manifest:manifest xmlns:manifest=\"urn:oasis:names:tc:opendocument:xmlns:manifest:1.0\">\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"application/vnd.oasis.opendocument." + mimetype + "\" manifest:full-path=\"/\"/>\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"application/vnd.sun.xml.ui.configuration\" manifest:full-path=\"Configurations2/\"/>\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"\" manifest:full-path=\"Pictures/\"/>\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"text/xml\" manifest:full-path=\"content.xml\"/>\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"text/xml\" manifest:full-path=\"styles.xml\"/>\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"text/xml\" manifest:full-path=\"meta.xml\"/>\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"\" manifest:full-path=\"Thumbnails/thumbnail.png\"/>\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"\" manifest:full-path=\"Thumbnails/\"/>\n");
		manifestWriter.write("  <manifest:file-entry manifest:media-type=\"text/xml\" manifest:full-path=\"settings.xml\"/>\n");
		manifestWriter.write("</manifest:manifest>\n");
		manifestWriter.flush();
	}
	finally
	{
		if (manifestWriter != null)
		{
			try
			{
				manifestWriter.close();
			}
			catch (IOException e)
			{
			}
		}
	}
}
 

@Override
public void writeTo(JSONStreamAware jsonStreamAware, Class<?> aClass, Type type, Annotation[] annotations,
                    MediaType mediaType, MultivaluedMap<String, Object> stringObjectMultivaluedMap,
                    OutputStream outputStream) throws IOException, WebApplicationException {
  Writer writer = new OutputStreamWriter(outputStream, Charsets.UTF_8);
  jsonStreamAware.writeJSONString(writer);
  writer.write(ENTER);
  writer.flush();
}
 

/** Write the project as XML.
 *
 * @param project
 * @param writer
 * @param options
 * */
public void writeXMLTo(final Project project, final Writer writer, final XMLOptions options) throws Exception {
		StringBuilder sb_header = new StringBuilder(30000).append("<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?>\n<!DOCTYPE ").append(project.getDocType()).append(" [\n");
		project.exportDTD(sb_header, new HashSet<String>(), "\t");
		sb_header.append("] >\n\n");
		writer.write(sb_header.toString());
		sb_header = null;
		project.exportXML(writer, "", options);
		writer.flush(); // make sure all buffered chars are written
}
 

/**
 * Runs the test.
 */
public void testIncludeEventHandling ()
        throws Exception
{
    Template template1 = RuntimeSingleton.getTemplate(
        getFileName(null, "test1", TMPL_FILE_EXT));

    Template template2 = RuntimeSingleton.getTemplate(
        getFileName(null, "subdir/test2", TMPL_FILE_EXT));

    Template template3 = RuntimeSingleton.getTemplate(
        getFileName(null, "test3", TMPL_FILE_EXT));

    FileOutputStream fos1 =
        new FileOutputStream (
            getFileName(RESULTS_DIR, "test1", RESULT_FILE_EXT));

    FileOutputStream fos2 =
        new FileOutputStream (
            getFileName(RESULTS_DIR, "test2", RESULT_FILE_EXT));

    FileOutputStream fos3 =
        new FileOutputStream (
            getFileName(RESULTS_DIR, "test3", RESULT_FILE_EXT));

    Writer writer1 = new BufferedWriter(new OutputStreamWriter(fos1));
    Writer writer2 = new BufferedWriter(new OutputStreamWriter(fos2));
    Writer writer3 = new BufferedWriter(new OutputStreamWriter(fos3));

    /*
     *  lets make a Context and add the event cartridge
     */

    Context context = new VelocityContext();

    /*
     *  Now make an event cartridge, register the
     *  input event handler and attach it to the
     *  Context
     */

    EventCartridge ec = new EventCartridge();
    ec.addEventHandler(this);
    ec.attachToContext( context );


    // BEHAVIOR A: pass through #input and #parse with no change
    EventHandlerBehavior = PASS_THROUGH;

    template1.merge(context, writer1);
    writer1.flush();
    writer1.close();

    // BEHAVIOR B: pass through #input and #parse with using a relative path
    EventHandlerBehavior = RELATIVE_PATH;

    template2.merge(context, writer2);
    writer2.flush();
    writer2.close();

    // BEHAVIOR C: refuse to pass through #input and #parse
    EventHandlerBehavior = BLOCK;

    template3.merge(context, writer3);
    writer3.flush();
    writer3.close();

    if (!isMatch(RESULTS_DIR, COMPARE_DIR, "test1",
            RESULT_FILE_EXT, CMP_FILE_EXT) ||
        !isMatch(RESULTS_DIR, COMPARE_DIR, "test2",
            RESULT_FILE_EXT, CMP_FILE_EXT) ||
        !isMatch(RESULTS_DIR, COMPARE_DIR, "test3",
            RESULT_FILE_EXT, CMP_FILE_EXT)
            )
    {
        fail("Output incorrect.");
    }
}
 

/**
 * Runs the test.
 */
public void testClasspathResource ()
        throws Exception
{
    /*
     *  lets ensure the results directory exists
     */
    assureResultsDirectoryExists(RESULTS_DIR);

    Template template1 = RuntimeSingleton.getTemplate("/includeevent/test1-cp." + TMPL_FILE_EXT);

    // Uncomment when http://jira.codehaus.org/browse/MPTEST-57 has been resolved
    //            Template template2 = RuntimeSingleton.getTemplate(
    //                getFileName(null, "template/test2", TMPL_FILE_EXT));

    FileOutputStream fos1 =
        new FileOutputStream (
            getFileName(RESULTS_DIR, "test1", RESULT_FILE_EXT));

    // Uncomment when http://jira.codehaus.org/browse/MPTEST-57 has been resolved
    //            FileOutputStream fos2 =
    //                new FileOutputStream (
    //                    getFileName(RESULTS_DIR, "test2", RESULT_FILE_EXT));

    Writer writer1 = new BufferedWriter(new OutputStreamWriter(fos1));
    // Uncomment when http://jira.codehaus.org/browse/MPTEST-57 has been resolved
    //            Writer writer2 = new BufferedWriter(new OutputStreamWriter(fos2));

    /*
     *  put the Vector into the context, and merge both
     */

    VelocityContext context = new VelocityContext();

    template1.merge(context, writer1);
    writer1.flush();
    writer1.close();

    // Uncomment when http://jira.codehaus.org/browse/MPTEST-57 has been resolved
    //            template2.merge(context, writer2);
    //            writer2.flush();
    //            writer2.close();

    if (!isMatch(RESULTS_DIR,COMPARE_DIR,"test1",RESULT_FILE_EXT,CMP_FILE_EXT)
            // Uncomment when http://jira.codehaus.org/browse/MPTEST-57 has been resolved
            //                || !isMatch(RESULTS_DIR,COMPARE_DIR,"test2",RESULT_FILE_EXT,CMP_FILE_EXT)
        )
    {
        fail("Output is incorrect!");
    }
}
 

protected void exportReportToStream(Writer writer) throws JRException, IOException
{
	version = getPropertiesUtil().getProperty(jasperPrint, JRXmlBaseWriter.PROPERTY_REPORT_VERSION);
	
	xmlWriter = new JRXmlWriteHelper(writer);
	
	xmlWriter.writeProlog(getExporterOutput().getEncoding());

	xmlWriter.startElement(JRXmlConstants.ELEMENT_jasperPrint, getNamespace());
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_name, jasperPrint.getName());
	xmlWriter.addAttribute(JRXmlConstants.ATTRIBUTE_pageWidth, jasperPrint.getPageWidth());
	xmlWriter.addAttribute(JRXmlConstants.ATTRIBUTE_pageHeight, jasperPrint.getPageHeight());
	xmlWriter.addAttribute(JRXmlConstants.ATTRIBUTE_topMargin, jasperPrint.getTopMargin());
	xmlWriter.addAttribute(JRXmlConstants.ATTRIBUTE_leftMargin, jasperPrint.getLeftMargin());
	xmlWriter.addAttribute(JRXmlConstants.ATTRIBUTE_bottomMargin, jasperPrint.getBottomMargin());
	xmlWriter.addAttribute(JRXmlConstants.ATTRIBUTE_rightMargin, jasperPrint.getRightMargin());
	xmlWriter.addAttribute(JRXmlConstants.ATTRIBUTE_orientation, jasperPrint.getOrientationValue(), OrientationEnum.PORTRAIT);
	xmlWriter.addAttribute(JRXmlConstants.ATTRIBUTE_formatFactoryClass, jasperPrint.getFormatFactoryClass());		
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_locale, jasperPrint.getLocaleCode());		
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_timezone, jasperPrint.getTimeZoneId());
	
	setCurrentExporterInputItem(exporterInput.getItems().get(0));
	
	List<JRPrintPage> pages = jasperPrint.getPages();

	PageRange pageRange = getPageRange();
	int startPageIndex = (pageRange == null || pageRange.getStartPageIndex() == null) ? 0 : pageRange.getStartPageIndex();
	int endPageIndex = (pageRange == null || pageRange.getEndPageIndex() == null) ? (pages.size() - 1) : pageRange.getEndPageIndex();

	//FIXME this leads to property duplication if a JasperPrint is loaded
	//from a *.jrpxml and exported back to xml
	xmlWriter.startElement(JRXmlConstants.ELEMENT_property);
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_name, PROPERTY_START_PAGE_INDEX);
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_value, String.valueOf(startPageIndex));
	xmlWriter.closeElement();

	xmlWriter.startElement(JRXmlConstants.ELEMENT_property);
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_name, PROPERTY_END_PAGE_INDEX);
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_value, String.valueOf(endPageIndex));
	xmlWriter.closeElement();

	xmlWriter.startElement(JRXmlConstants.ELEMENT_property); //FIXME make this configurable?
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_name, PROPERTY_PAGE_COUNT);
	xmlWriter.addEncodedAttribute(JRXmlConstants.ATTRIBUTE_value, jasperPrint.getPages() == null ? null : String.valueOf(jasperPrint.getPages().size()));
	xmlWriter.closeElement();

	exportProperties(jasperPrint);
	
	JROrigin[] origins = jasperPrint.getOrigins();
	if (origins != null && origins.length > 0)
	{
		for(int i = 0; i < origins.length; i++)
		{
			exportOrigin(origins[i]);
		}
	}

	JRStyle[] styles = jasperPrint.getStyles();
	if (styles != null && styles.length > 0)
	{
		for(int i = 0; i < styles.length; i++)
		{
			stylesMap.put(styles[i].getName(), styles[i]);
			exportStyle(styles[i]);
		}
	}

	exportBookmarks(jasperPrint.getBookmarks());
	
	PrintParts parts = jasperPrint.getParts();
	if (parts != null && parts.hasParts())
	{
		for (Iterator<Map.Entry<Integer, PrintPart>> it = parts.partsIterator(); it.hasNext();)
		{
			Map.Entry<Integer, PrintPart> partsEntry = it.next();
			/*   */
			exportPart(partsEntry.getKey(), partsEntry.getValue());
		}
	}

	if (pages != null && pages.size() > 0)
	{
		JRPrintPage page = null;
		for(int i = startPageIndex; i <= endPageIndex; i++)
		{
			if (Thread.interrupted())
			{
				throw new ExportInterruptedException();
			}
			
			page = pages.get(i);

			/*   */
			exportPage(page);
		}
	}

	xmlWriter.closeElement();
	
	writer.flush();
}
 

/**
 * Serializes a Document Type Node.
 *
 * @param node The Docuemnt Type Node to serialize
 * @param bStart Invoked at the start or end of node.  Default true.
 */
protected void serializeDocType(DocumentType node, boolean bStart)
    throws SAXException {
    // The DocType and internalSubset can not be modified in DOM and is
    // considered to be well-formed as the outcome of successful parsing.
    String docTypeName = node.getNodeName();
    String publicId = node.getPublicId();
    String systemId = node.getSystemId();
    String internalSubset = node.getInternalSubset();

    //DocumentType nodes are never passed to the filter

    if (internalSubset != null && !"".equals(internalSubset)) {

        if (bStart) {
            try {
                // The Serializer does not provide a way to write out the
                // DOCTYPE internal subset via an event call, so we write it
                // out here.
                Writer writer = fSerializer.getWriter();
                StringBuffer dtd = new StringBuffer();

                dtd.append("<!DOCTYPE ");
                dtd.append(docTypeName);
                if (null != publicId) {
                    dtd.append(" PUBLIC \"");
                    dtd.append(publicId);
                    dtd.append('\"');
                }

                if (null != systemId) {
                    if (null == publicId) {
                        dtd.append(" SYSTEM \"");
                    } else {
                        dtd.append(" \"");
                    }
                    dtd.append(systemId);
                    dtd.append('\"');
                }

                dtd.append(" [ ");

                dtd.append(fNewLine);
                dtd.append(internalSubset);
                dtd.append("]>");
                dtd.append(fNewLine);

                writer.write(dtd.toString());
                writer.flush();

            } catch (IOException e) {
                throw new SAXException(Utils.messages.createMessage(
                        MsgKey.ER_WRITING_INTERNAL_SUBSET, null), e);
            }
        } // else if !bStart do nothing

    } else {

        if (bStart) {
            if (fLexicalHandler != null) {
                fLexicalHandler.startDTD(docTypeName, publicId, systemId);
            }
        } else {
            if (fLexicalHandler != null) {
                fLexicalHandler.endDTD();
            }
        }
    }
}
 

protected void measureNow(String[] args)
    throws IOException {
    this.path = args[1];
    String bn_name = args[2];

    Writer wr = RandomStuff.getWriter(
            RandomStuff.f("%s/res/%s", this.path, bn_name));

    RandomStuff.wf(wr, "### %s ###\n", bn_name);
    for (int p = 0; p < this.percs.length; p++) {
        int per = this.percs[p];

        RandomStuff.wf(wr, "\[email protected]@@ %d \n", per);
        for (String classi : this.classifiers) {
            RandomStuff.wf(wr, "\n### %s \n", classi);
            for (String m : new String[] {
                "orig", "sem", "rfsrc", "missing" }) {
                double mae = 0.0D;
                double auc = 0.0D;

                for (int f = 1; f <= this.max_fold; f++) {
                    String out = RandomStuff.f(
                            "%s/work/%s/fold%d/%d/eval/%s/%s-out", this.path,
                            bn_name, f, per, classi, m);

                    BufferedReader br = RandomStuff.getReader(out);

                    boolean ok = false;
                    String ll;

                    while ((ll = br.readLine()) != null) {
                        if (ll.contains("Error on test data")) {
                            ok = true;
                        }
                        if ((ok) && (ll.contains("Mean absolute error"))) {
                            mae += last(ll, 3);
                        }
                        if ((ok) && (ll.contains("Weighted Avg."))) {
                            auc += last(ll, 8);
                        }
                    }
                }
                RandomStuff.wf(wr, "%10s, auc: %4.4f, mae: %4.4f \n", m,
                        auc / this.max_fold, mae / this.max_fold);

                wr.flush();
            }
        }
    }
    wr.close();
}
 

/**
 * parses the given command and executes it
 *
 * @param np
 * @throws java.io.IOException
 */
@Override
public void apply(NexusStreamParser np) throws Exception {
    np.matchIgnoreCase("list assignmentsToLevels");
    final String fileName;
    if (np.peekMatchIgnoreCase("outFile")) {
        np.matchIgnoreCase("outFile=");
        fileName = np.getWordFileNamePunctuation();
    } else
        fileName = null;
    np.matchIgnoreCase(";");


    // use -3 for leaves, -2 and -1 for no hits and unassigned
    final SortedMap<Integer, Float> level2count = new TreeMap<>();
    level2count.put(-3, 0f);
    level2count.put(-2, 0f);
    level2count.put(-1, 0f);

    final SortedMap<String, Float> rank2count = new TreeMap<>();

    final PhyloTree tree = getDir().getMainViewer().getTree();
    listAssignmentsRec(tree, tree.getRoot(), 0, level2count, rank2count);

    final Writer w = new BufferedWriter(fileName == null ? new OutputStreamWriter(System.out) : new FileWriter(fileName));
    int count = 0;
    try {
        w.write("########## Begin of level-to-assignment listing for file: " + getDir().getDocument().getMeganFile().getName() + "\n");
        w.write("To leaves:  " + level2count.get(-3) + "\n");
        w.write("Unassigned: " + level2count.get(-2) + "\n");
        w.write("No hits:    " + level2count.get(-1) + "\n");
        w.write("Assignments to levels (distance from root):\n");
        count += 5;

        for (int level : level2count.keySet()) {
            if (level >= 0) {
                w.write(level + "\t" + level2count.get(level) + "\n");
                count++;
            }
        }

        w.write("Assignments to taxonomic ranks (where known):\n");
        count++;
        for (String rank : TaxonomicLevels.getAllNames()) {
            if (rank2count.get(rank) != null) {
                w.write(rank + "\t" + rank2count.get(rank) + "\n");
                count++;
            }
        }
        w.write("########## End of level-to-assignment listing\n");
        count++;

    } finally {
        if (fileName != null)
            w.close();
        else
            w.flush();
    }
    if (fileName != null && count > 0)
        NotificationsInSwing.showInformation(getViewer().getFrame(), "Lines written to file: " + count);
}