org.hl7.fhir.r4.model.DateTimeType Java Examples

public static boolean isDeprecated(CodeSystem cs, ConceptDefinitionComponent def)  {
  try {
    for (ConceptPropertyComponent p : def.getProperty()) {
      if (p.getCode().equals("status") && p.hasValue() && p.hasValueCodeType() && p.getValueCodeType().getCode().equals("deprecated"))
        return true;
      // this, though status should also be set
      if (p.getCode().equals("deprecationDate") && p.hasValue() && p.getValue() instanceof DateTimeType) 
        return ((DateTimeType) p.getValue()).before(new DateTimeType(Calendar.getInstance()));
      // legacy  
      if (p.getCode().equals("deprecated") && p.hasValue() && p.getValue() instanceof BooleanType) 
        return ((BooleanType) p.getValue()).getValue();
    }
    return false;
  } catch (FHIRException e) {
    return false;
  }
}
 

public Bundle process(String sourceFile) throws FileNotFoundException, SAXException, IOException, ParserConfigurationException {
  this.definitions = sourceFile;
  log("Begin. Produce Loinc CDEs in "+dest+" from "+definitions);
  loadLoinc();
  log("LOINC loaded");

  now = DateTimeType.now();

  bundle = new Bundle();
  bundle.setType(BundleType.COLLECTION);
  bundle.setId("http://hl7.org/fhir/commondataelement/loinc");
  bundle.setMeta(new Meta().setLastUpdatedElement(InstantType.now()));

  processLoincCodes();
  return bundle;
}
 

public void process() throws FHIRFormatError, IOException, XmlPullParserException, SAXException, ParserConfigurationException {
	log("Begin. Produce Loinc CDEs in "+dest+" from "+definitions);
	loadLoinc();
	log("LOINC loaded");

	now = DateTimeType.now();

	bundle = new Bundle();
	bundle.setId("http://hl7.org/fhir/commondataelement/loinc");
   bundle.setMeta(new Meta().setLastUpdatedElement(InstantType.now()));

	processLoincCodes();
	if (dest != null) {
		log("Saving...");
		saveBundle();
	}
	log("Done");

}
 

public static Stream<Arguments> r4PrimitiveTypes() {
  return Stream.of(
    Arguments.arguments(BooleanType.class.getSimpleName(), new BooleanType()),
    Arguments.arguments(CodeType.class.getSimpleName(), new CodeType()),
    Arguments.arguments(DateType.class.getSimpleName(), new DateType()),
    Arguments.arguments(DateTimeType.class.getSimpleName(), new DateTimeType()),
    Arguments.arguments(DecimalType.class.getSimpleName(), new DecimalType()),
    Arguments.arguments(InstantType.class.getSimpleName(), new InstantType()),
    Arguments.arguments(PositiveIntType.class.getSimpleName(), new PositiveIntType()),
    Arguments.arguments(UnsignedIntType.class.getSimpleName(), new UnsignedIntType()),
    Arguments.arguments(IntegerType.class.getSimpleName(), new IntegerType()),
    Arguments.arguments(MarkdownType.class.getSimpleName(), new MarkdownType()),
    Arguments.arguments(OidType.class.getSimpleName(), new OidType()),
    Arguments.arguments(StringType.class.getSimpleName(), new StringType()),
    Arguments.arguments(TimeType.class.getSimpleName(), new TimeType()),
    Arguments.arguments(UuidType.class.getSimpleName(), new UuidType()),
    Arguments.arguments(Base64BinaryType.class.getSimpleName(), new Base64BinaryType()),
    Arguments.arguments(UriType.class.getSimpleName(), new UriType()));
}
 

public static Stream<Arguments> r5PrimitiveTypes() {
  return Stream.of(
    Arguments.arguments(org.hl7.fhir.r5.model.BooleanType.class.getSimpleName(), new org.hl7.fhir.r5.model.BooleanType()),
    Arguments.arguments(org.hl7.fhir.r5.model.CodeType.class.getSimpleName(), new org.hl7.fhir.r5.model.CodeType()),
    Arguments.arguments(org.hl7.fhir.r5.model.DateType.class.getSimpleName(), new org.hl7.fhir.r5.model.DateType()),
    Arguments.arguments(org.hl7.fhir.r5.model.DateTimeType.class.getSimpleName(), new org.hl7.fhir.r5.model.DateTimeType()),
    Arguments.arguments(org.hl7.fhir.r5.model.DecimalType.class.getSimpleName(), new org.hl7.fhir.r5.model.DecimalType()),
    Arguments.arguments(org.hl7.fhir.r5.model.InstantType.class.getSimpleName(), new org.hl7.fhir.r5.model.InstantType()),
    Arguments.arguments(org.hl7.fhir.r5.model.PositiveIntType.class.getSimpleName(), new org.hl7.fhir.r5.model.PositiveIntType()),
    Arguments.arguments(org.hl7.fhir.r5.model.UnsignedIntType.class.getSimpleName(), new org.hl7.fhir.r5.model.UnsignedIntType()),
    Arguments.arguments(org.hl7.fhir.r5.model.IntegerType.class.getSimpleName(), new org.hl7.fhir.r5.model.IntegerType()),
    Arguments.arguments(org.hl7.fhir.r5.model.MarkdownType.class.getSimpleName(), new org.hl7.fhir.r5.model.MarkdownType()),
    Arguments.arguments(org.hl7.fhir.r5.model.OidType.class.getSimpleName(), new org.hl7.fhir.r5.model.OidType()),
    Arguments.arguments(org.hl7.fhir.r5.model.StringType.class.getSimpleName(), new org.hl7.fhir.r5.model.StringType()),
    Arguments.arguments(org.hl7.fhir.r5.model.TimeType.class.getSimpleName(), new org.hl7.fhir.r5.model.TimeType()),
    Arguments.arguments(org.hl7.fhir.r5.model.UuidType.class.getSimpleName(), new org.hl7.fhir.r5.model.UuidType()),
    Arguments.arguments(org.hl7.fhir.r5.model.Base64BinaryType.class.getSimpleName(), new org.hl7.fhir.r5.model.Base64BinaryType()),
    Arguments.arguments(org.hl7.fhir.r5.model.UriType.class.getSimpleName(), new org.hl7.fhir.r5.model.UriType()));
}
 

private String convertForDateFormatFromExternal(String fmt, String av) throws FHIRException {
 	if ("v3".equals(fmt)) {
 		DateTimeType d = DateTimeType.parseV3(av);
 		return d.asStringValue();
 	} else
 		throw new FHIRException("Unknown Data format '"+fmt+"'");
}
 

private String convertForDateFormatToExternal(String fmt, String av) throws FHIRException {
  if ("v3".equals(fmt)) {
    DateTimeType d = new DateTimeType(av);
    return d.getAsV3();
  } else
    throw new FHIRException("Unknown Date format '"+fmt+"'");
}
 

public void setMetadata(Document src, CodeSystem cs, String id, String url, String partName, String partTitle) {
  cs.setId(id);
  cs.setUrl(url);
  cs.setName("ISOCountryCodes"+partName);
  cs.setTitle("ISO Country Codes (ISO-3166)"+partTitle);
  cs.setVersion(XMLUtil.getFirstChild(src.getDocumentElement()).getAttribute("version"));
  cs.setStatus(PublicationStatus.ACTIVE);
  cs.setExperimental(false);
  cs.addContact().setName("FHIR Project Team").addTelecom().setSystem(ContactPointSystem.URL).setValue("http://hl7.org/fhir");
  cs.setDateElement(new DateTimeType(src.getDocumentElement().getAttribute("generated")));
  cs.setCopyright("Copyright ISO. See https://www.iso.org/obp/ui/#search/code/");
  cs.setCaseSensitive(true);
  cs.setContent(CodeSystemContentMode.COMPLETE);
  cs.setLanguage("en");
}
 

@Test
public void choiceValue() {

  // Our test condition uses the DateTime choice, so use that type and column.
  Assert.assertEquals(((DateTimeType) condition.getOnset()).getValueAsString(),
      conditionsDataset.select("onsetDateTime").head().get(0));

  Assert.assertEquals(condition.getOnset().toString(),
      decodedCondition.getOnset().toString());
}
 

/**
 * Convert the timestamp into a FHIR DateType or DateTimeType.
 *
 * @param datetime Timestamp
 * @param time     If true, return a DateTime; if false, return a Date.
 * @return a DateType or DateTimeType representing the given timestamp
 */
private static Type convertFhirDateTime(long datetime, boolean time) {
  Date date = new Date(datetime);

  if (time) {
    return new DateTimeType(date);
  } else {
    return new DateType(date);
  }
}
 

public static void setDeprecated(CodeSystem cs, ConceptDefinitionComponent concept, DateTimeType date) throws FHIRFormatError {
  setStatus(cs, concept, ConceptStatus.Deprecated);
  defineDeprecatedProperty(cs);
  concept.addProperty().setCode("deprecationDate").setValue(date);    
}
 

/**
 * Returns a FHIR Condition for testing purposes.
 */
public static Condition newCondition() {

  Condition condition = new Condition();

  // Condition based on example from FHIR:
  // https://www.hl7.org/fhir/condition-example.json.html
  condition.setId("Condition/example");

  condition.setLanguage("en_US");

  // Narrative text
  Narrative narrative = new Narrative();
  narrative.setStatusAsString("generated");
  narrative.setDivAsString("This data was generated for test purposes.");
  XhtmlNode node = new XhtmlNode();
  node.setNodeType(NodeType.Text);
  node.setValue("Severe burn of left ear (Date: 24-May 2012)");
  condition.setText(narrative);

  condition.setSubject(new Reference("Patient/example").setDisplay("Here is a display for you."));

  condition.setVerificationStatus(Condition.ConditionVerificationStatus.CONFIRMED);

  // Condition code
  CodeableConcept code = new CodeableConcept();
  code.addCoding()
      .setSystem("http://snomed.info/sct")
      .setCode("39065001")
      .setDisplay("Severe");
  condition.setSeverity(code);

  // Severity code
  CodeableConcept severity = new CodeableConcept();
  severity.addCoding()
      .setSystem("http://snomed.info/sct")
      .setCode("24484000")
      .setDisplay("Burn of ear")
      .setUserSelected(true);
  condition.setSeverity(severity);

  // Onset date time
  DateTimeType onset = new DateTimeType();
  onset.setValueAsString("2012-05-24");
  condition.setOnset(onset);

  return condition;
}
 

/**
 * Add a MedicationAdministration if needed for the given medication.
 * 
 * @param personEntry       The Entry for the Person
 * @param bundle            Bundle to add the MedicationAdministration to
 * @param encounterEntry    Current Encounter entry
 * @param medication        The Medication
 * @param medicationRequest The related medicationRequest
 * @return The added Entry
 */
private static BundleEntryComponent medicationAdministration(
    BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry,
    Medication medication, MedicationRequest medicationRequest) {

  MedicationAdministration medicationResource = new MedicationAdministration();

  medicationResource.setSubject(new Reference(personEntry.getFullUrl()));
  medicationResource.setContext(new Reference(encounterEntry.getFullUrl()));

  Code code = medication.codes.get(0);
  String system = code.system.equals("SNOMED-CT") ? SNOMED_URI : RXNORM_URI;

  medicationResource.setMedication(mapCodeToCodeableConcept(code, system));
  medicationResource.setEffective(new DateTimeType(new Date(medication.start)));

  medicationResource.setStatus("completed");

  if (medication.prescriptionDetails != null) {
    JsonObject rxInfo = medication.prescriptionDetails;
    MedicationAdministrationDosageComponent dosage =
        new MedicationAdministrationDosageComponent();

    // as_needed is false
    if ((rxInfo.has("dosage")) && (!rxInfo.has("as_needed"))) {
      Quantity dose = new SimpleQuantity()
          .setValue(rxInfo.get("dosage").getAsJsonObject().get("amount").getAsDouble());
      dosage.setDose((SimpleQuantity) dose);

      if (rxInfo.has("instructions")) {
        for (JsonElement instructionElement : rxInfo.get("instructions").getAsJsonArray()) {
          JsonObject instruction = instructionElement.getAsJsonObject();

          dosage.setText(instruction.get("display").getAsString());
        }
      }
    }
    if (rxInfo.has("refills")) {
      SimpleQuantity rate = new SimpleQuantity();
      rate.setValue(rxInfo.get("refills").getAsLong());
      dosage.setRate(rate);
    }
    medicationResource.setDosage(dosage);
  }

  if (!medication.reasons.isEmpty()) {
    // Only one element in list
    Code reason = medication.reasons.get(0);
    for (BundleEntryComponent entry : bundle.getEntry()) {
      if (entry.getResource().fhirType().equals("Condition")) {
        Condition condition = (Condition) entry.getResource();
        // Only one element in list
        Coding coding = condition.getCode().getCoding().get(0);
        if (reason.code.equals(coding.getCode())) {
          medicationResource.addReasonReference().setReference(entry.getFullUrl());
        }
      }
    }
  }

  BundleEntryComponent medicationAdminEntry = newEntry(bundle, medicationResource);
  return medicationAdminEntry;
}