org.hl7.fhir.dstu3.model.AllergyIntolerance Java Examples

@Read()
public AllergyIntolerance get(@IdParam IdType allergyId) {
	
	resourcePermissionProvider.checkPermission("read");
	
    AllergyIntolerance allergy = allergyDao.read(ctx,allergyId);

    if ( allergy == null) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(
                new ResourceNotFoundException("No AllergyIntolerance/ " + allergyId.getIdPart()),
                OperationOutcome.IssueType.NOTFOUND);
    }

    return allergy;
}
 

@Search
public List<AllergyIntolerance> search(HttpServletRequest theRequest,
                                       @OptionalParam(name = AllergyIntolerance.SP_PATIENT) ReferenceParam patient
        , @OptionalParam(name = AllergyIntolerance.SP_DATE) DateRangeParam date
        , @OptionalParam(name = AllergyIntolerance.SP_CLINICAL_STATUS) TokenParam clinicalStatus
        , @OptionalParam(name = AllergyIntolerance.SP_IDENTIFIER) TokenParam identifier
        , @OptionalParam(name = AllergyIntolerance.SP_RES_ID) StringParam resid
        , @OptionalParam(name = AllergyIntolerance.SP_VERIFICATION_STATUS) TokenParam verificationStatus
) {
    return allergyDao.search(ctx,patient, date, clinicalStatus,identifier,resid, verificationStatus);
}
 

List<AllergyIntoleranceEntity> searchEntity(FhirContext ctx,
        @OptionalParam(name = AllergyIntolerance.SP_PATIENT) ReferenceParam patient
        , @OptionalParam(name = AllergyIntolerance.SP_DATE) DateRangeParam date
        , @OptionalParam(name = AllergyIntolerance.SP_CLINICAL_STATUS) TokenParam clinicalStatus
        , @OptionalParam(name = AllergyIntolerance.SP_IDENTIFIER) TokenParam identifier
        , @OptionalParam(name= AllergyIntolerance.SP_RES_ID) StringParam id
        , @OptionalParam(name = AllergyIntolerance.SP_VERIFICATION_STATUS) TokenParam verificationStatus
);
 

List<AllergyIntolerance> search(
        FhirContext ctx,
        @OptionalParam(name = AllergyIntolerance.SP_PATIENT) ReferenceParam patient
        , @OptionalParam(name = AllergyIntolerance.SP_DATE) DateRangeParam date
        , @OptionalParam(name = AllergyIntolerance.SP_CLINICAL_STATUS) TokenParam clinicalStatus
        , @OptionalParam(name = AllergyIntolerance.SP_IDENTIFIER) TokenParam identifier
        , @OptionalParam(name= AllergyIntolerance.SP_RES_ID) StringParam id
        , @OptionalParam(name = AllergyIntolerance.SP_VERIFICATION_STATUS) TokenParam verificationStatus

);
 

public AllergyIntolerance.AllergyIntoleranceSeverity getSeverity() {
    return severity;
}
 

@Validate
public MethodOutcome testResource(@ResourceParam AllergyIntolerance resource,
                              @Validate.Mode ValidationModeEnum theMode,
                              @Validate.Profile String theProfile) {
    return resourceTestProvider.testResource(resource,theMode,theProfile);
}
 

@Create
public MethodOutcome create(HttpServletRequest theRequest, @ResourceParam AllergyIntolerance allergy) {

	resourcePermissionProvider.checkPermission("create");
	
    MethodOutcome method = new MethodOutcome();
    method.setCreated(true);
    OperationOutcome opOutcome = new OperationOutcome();

    method.setOperationOutcome(opOutcome);

    try {
    AllergyIntolerance newAllergyIntolerance = allergyDao.create(ctx,allergy, null,null);
    method.setId(newAllergyIntolerance.getIdElement());
    method.setResource(newAllergyIntolerance);
    } catch (Exception ex) {

        ProviderResponseLibrary.handleException(method,ex);
    }



    return method;
}
 

@Update
public MethodOutcome update(HttpServletRequest theRequest, @ResourceParam AllergyIntolerance allergy, @IdParam IdType theId, @ConditionalUrlParam String theConditional, RequestDetails theRequestDetails) {

	resourcePermissionProvider.checkPermission("update");
	
    MethodOutcome method = new MethodOutcome();
    method.setCreated(true);
    OperationOutcome opOutcome = new OperationOutcome();

    method.setOperationOutcome(opOutcome);

    try {
    AllergyIntolerance newAllergyIntolerance = allergyDao.create(ctx,allergy, theId, theConditional);
    method.setId(newAllergyIntolerance.getIdElement());
    method.setResource(newAllergyIntolerance);
    } catch (Exception ex) {

        ProviderResponseLibrary.handleException(method,ex);
    }




    return method;
}
 

@Override
public Class<? extends IBaseResource> getResourceType() {
    return AllergyIntolerance.class;
}
 

AllergyIntolerance create(FhirContext ctx,
AllergyIntolerance allergy,
@IdParam IdType theId,
@ConditionalUrlParam String theConditional) throws OperationOutcomeException;
 

public AllergyIntoleranceReaction setSeverity(AllergyIntolerance.AllergyIntoleranceSeverity severity) {
    this.severity = severity;
    return this;
}
 

private void processAllergiesSection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
	scanSection("Allergies", section);
	ListResource list = new ListResource();
	list.setId(context.baseId+"-list-allergies");
	list.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/list-daf-dafallergylist");
	list.setSubject(context.subjectRef);
	list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")), null));
	list.setTitle(cda.getChild(section, "title").getTextContent());
	list.setStatus(ListStatus.CURRENT);
	list.setDateElement(context.now);
	list.setSource(context.authorRef);
	list.setMode(ListMode.SNAPSHOT);
	buildNarrative(list, cda.getChild(section, "text"));

	int i = 0;
	for (Element c : cda.getChildren(section, "entry")) {
		Element apa = cda.getChild(c, "act"); // allergy problem act
		AllergyIntolerance ai = new AllergyIntolerance();
		ai.setId(context.baseId+"-allergy-"+Integer.toString(i));
		ai.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/allergyintolerance-daf-dafallergyintolerance");
		i++;
		ai.setPatient(context.subjectRef);

		ai.setAssertedDateElement(convert.makeDateTimeFromTS(cda.getChild(cda.getChild(apa, "effectiveTime"), "low")));
		boolean found = false;
		for (Element e : cda.getChildren(apa, "id")) {
			Identifier id = convert.makeIdentifierFromII(e);
			ai.getIdentifier().add(id);
		}
		if (!found) {
			list.addEntry().setItem(new Reference().setReference("AllergyIntolerance/"+ai.getId()));

			Element ao = cda.getChild(cda.getChild(apa, "entryRelationship"), "observation"); // allergy observation
			if (!cda.getChild(ao, "value").getAttribute("code").equals("419511003"))
				throw new Error("unexpected code");
			// nothing....

			// no allergy status observation
			List<Element> reactions = cda.getChildren(ao, "entryRelationship");
			Element pe = cda.getChild(cda.getChild(cda.getChild(ao, "participant"), "participantRole"), "playingEntity");
			Element pec = cda.getChild(pe, "code");
			if (pec == null || !Utilities.noString(pec.getAttribute("nullFlavor"))) {
				String n = cda.getChild(pe, "name").getTextContent();
				//				if (n.contains("No Known Drug Allergies") && reactions.isEmpty())
				//					ai.setSubstance(new CodeableConcept().setText(n)); // todo: what do with this?
				//				else
				ai.setCode(new CodeableConcept().setText(n));
			} else
				ai.setCode(inspectCode(convert.makeCodeableConceptFromCD(pec), null));
			recordAllergyCode(ai.getCode());
			if (!reactions.isEmpty()) {
				AllergyIntoleranceReactionComponent aie = ai.addReaction();
				for (Element er : reactions) {
					Element ro = cda.getChild(er, "observation");
					aie.addManifestation(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(ro, "value")), null));
				}
			}

			saveResource(ai);
		}
	}
	saveResource(list);
}
 

public void setCategory(AllergyIntolerance.AllergyIntoleranceCategory category) {
    this.category = category;
}
 

public AllergyIntolerance.AllergyIntoleranceCategory getCategory() {
    return category;
}
 

public AllergyIntoleranceEntity setCriticality(AllergyIntolerance.AllergyIntoleranceCriticality criticality) {
    this.criticality = criticality;
    return this;
}
 

public AllergyIntolerance.AllergyIntoleranceCriticality getCriticality() {
    return criticality;
}
 

public AllergyIntoleranceEntity setType(AllergyIntolerance.AllergyIntoleranceType type) {
    this.type = type;
    return this;
}
 

public AllergyIntolerance.AllergyIntoleranceType getType() {
    return type;
}
 

public AllergyIntoleranceEntity setVerificationStatus(AllergyIntolerance.AllergyIntoleranceVerificationStatus verificationStatus) {
    this.verificationStatus = verificationStatus;
    return this;
}
 

public AllergyIntolerance.AllergyIntoleranceVerificationStatus getVerificationStatus() {
    return verificationStatus;
}
 

public AllergyIntoleranceEntity setClinicalStatus(AllergyIntolerance.AllergyIntoleranceClinicalStatus clinicalStatus) {
    this.clinicalStatus = clinicalStatus;
    return this;
}
 

public AllergyIntolerance.AllergyIntoleranceClinicalStatus getClinicalStatus() {
    return clinicalStatus;
}
 

AllergyIntolerance read(FhirContext ctx, IdType theId);