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Project: chipster
(GitHub Link)
chipster-master
.github
workflows
ant.yml
src
main
resources
forward.gif
circle.gif
version.number
chipster-config-specification.xml
help
microarray-manual
info.txt
image.gif
gbrowserLegend
double_forward.gif
build.number
types
folder.gif
fonts
gc.gif
running.gif
square.gif
listicons
crystal
pca.xcf
crystal-LGPL
modified
profile.xcf
scatterplot.xcf
volcano.xcf
axes.xcf
scatter3d_2.xcf
web
tool-editor
src
fi
csc
chipster
web
tooledit
TextEditor.java
ConfirmClearAll.java
Icon.java
TreeToolEditor.java
ToolEditor.java
ToolEditorUI.java
model
BasicModel.java
Input.java
Parameter.java
Tool.java
InputOutputUI.java
Output.java
listener
CSCToolToTextClickListener.java
CSCTextToToolClickListener.java
CSCTextChangeListener.java
CSCTypeValueChangeListener.java
examples
simple-list.txt
newDesignQuestions.PNG
tool-editor-table.xlsx
download-libs.xml
.settings
org.apache.ivyde.eclipse.prefs
org.eclipse.wst.jsdt.ui.superType.container
org.eclipse.wst.jsdt.ui.superType.name
org.eclipse.wst.common.project.facet.core.xml
com.vaadin.integration.eclipse.prefs
org.eclipse.wst.common.component
.jsdtscope
org.eclipse.jdt.core.prefs
WebContent
VAADIN
themes
tool_editor
styles.scss
tool_editor.scss
images
styles.css
META-INF
MANIFEST.MF
WEB-INF
lib-ivy
commons-cli-jar-1.2.jar
commons-logging-jar-1.1.1.jar
sac-jar-1.3.jar
validation-api-jar-1.0.0.GA.jar
lib-ext
web.xml
ivy.xml
ivysettings.xml
.gitignore
.project
.classpath
admin-web
src
fi
csc
chipster
web
adminweb
ui
StorageAggregateTable.java
StatView.java
JobsTable.java
JobLogTable.java
JobLogFilter.java
AfterUpdateCallBack.java
StorageView.java
ServicesView.java
StorageEntryTable.java
JobsView.java
DateColumnGenerator.java
AsynchronousView.java
ReportView.java
ServicesTable.java
JobLogView.java
HumanReadableLongColumnGenerator.java
NavigationMenu.java
util
Notificationutil.java
RandomUtil.java
StringUtils.java
data
JobsContainer.java
ServiceContainer.java
StorageAggregateContainer.java
JobLogContainer.java
DateContainerFilter.java
ServiceEntry.java
StatDataSource.java
ReportDataSource.java
JobLogEntry.java
StorageEntryContainer.java
AccountEntry.java
TestAccountFilter.java
ChipsterAdminUI.java
hbncontainer
HibernateUtil.java
HibernateServletFilter.java
download-libs.xml
.settings
org.eclipse.wst.jsdt.ui.superType.container
org.eclipse.wst.jsdt.ui.superType.name
org.eclipse.wst.common.project.facet.core.xml
com.vaadin.integration.eclipse.prefs
org.eclipse.wst.common.component
.jsdtscope
org.eclipse.jdt.core.prefs
WebContent
VAADIN
themes
admin
crystal
images
styles.css
META-INF
MANIFEST.MF
WEB-INF
lib-ivy
log4j-api-jar-2.2.jar
hibernate-commons-annotations-jar-4.0.5.Final.jar
vaadin-slf4j-jdk14-jar-1.6.1.jar
jandex-jar-1.1.0.Final.jar
jboss-logging-jar-3.1.3.GA.jar
streamhtmlparser-jsilver-jar-0.0.10.vaadin1.jar
jboss-transaction-api_1.2_spec-jar-1.0.0.Final.jar
sac-jar-1.3.jar
jboss-logging-annotations-jar-1.2.0.Beta1.jar
xml-apis-jar-1.0.b2.jar
hibernate-jpa-2.1-api-jar-1.0.0.Final.jar
flute-jar-1.3.0.gg2.jar
hibernate-c3p0-jar-4.3.8.Final.jar
lib
hbncontainer-2.0.1-pull-request.jar
ngs-module-copy.xml
lib-ext
microarray-module-copy.xml
misc-module-copy.xml
web.xml
ivy.xml
ivysettings.xml
.gitignore
.project
.classpath
admin
admin-web
.gitignore
vm
install-chipster-before-3.0.sh
update-exec-3.6.2.sh
update.sh
install-chipster.sh
list.sh
update-exec3.sh
module-list.bash
install-module.sh
update-exec.sh
update-exec-3.11.0.sh
docs
VirusDetect-compile.bash
config.bash
installation_files
generate_installation_file.bash
functions.bash
modules
start
create_dirs.bash
external_tools
conda.bash
bcftools.bash
Weeder.bash
QDNAseq.bash
sym_link_to_admin_scripts.bash
phylipnew.bash
zifa.bash
Express.bash
vienna.bash
Cufflinks_2.bash
Picard_tools.bash
vcftools.bash
SAM_tools1.bash
Trimmomatic.bash
Tophat.bash
edirect.bash
tools-bin_python.bash
seqtk.bash
Tophat_2.bash
BEDTools.bash
tagcleaner.bash
GATK.bash
BaseSpace.bash
fseq.bash
gtf2bed.bash
Fastx_links.bash
HISAT2.bash
drop-seq_tools.bash
BLAST.bash
enaBrowserTools.bash
STAR.bash
VirusDetect.bash
A5.bash
dimont.bash
cd-hit.bash
mothur.bash
Bowtie_2.bash
BWA.bash
mview.bash
EMBOSS.bash
stringtie.bash
primer3.bash
fseq_bff.bash
DEXSeq.bash
sratoolkit.bash
rtg-tools.bash
SAM_tools.bash
tabix.bash
FastQC.bash
miRNA_mapping_data.bash
prinseq.bash
seurat.bash
Bowtie.bash
Mafft.bash
data_for_tools.bash
finish
fix_rights.bash
cleaner.bash
R
R-3.2.3.bash
R-3.3.2.bash
R-3.4.3.bash
R-3.6.1.bash
R-3.6.1-plain.bash
bundle
gbrowser-annotation-conversion.sh
setup-genome-browser-sheep.sh
bundles.yaml
to_bundle.py
create-bundle.sh
contentsToYaml.sh
bundle.py
installed.yaml
create-bundles.sh
setup-genome-browser-chicken.sh
gbrowser-annotation-package.sh
gbrowser-annotation-check.sh
bundles-template.yaml
edit_bundle.py
fedcloud
add_tools_to _path.sh
FedCloud_chipster_manager
applications
wrapper
comp
security
dir_not_empty.txt
chipster-comp-generic
chipster-comp
logs
dir_not_empty.txt
conf
runtimes.xml
chipster-config.xml
wrapper.conf
comp-admin.sh
jobmanager
security
dir_not_empty.txt
chipster-jobmanager-generic
chipster-jobmanager
logs
dir_not_empty.txt
conf
chipster-config.xml
wrapper.conf
configure.sh
download-tools.sh
chipster-client-config.xml
readme.txt
toolbox
security
dir_not_empty.txt
chipster-toolbox-generic
reload-tools.sh
logs
dir_not_empty.txt
chipster-toolbox
conf
chipster-config.xml
wrapper.conf
webstart
security
dir_not_empty.txt
web-root
images
styles.css
chipster.jnlp
index.html
chipster-cli.bash
chipster-webstart
chipster-webstart-generic
logs
dir_not_empty.txt
conf
chipster-config.xml
wrapper.conf
fileserver
security
dir_not_empty.txt
chipster-fileserver-generic
chipster-fileserver
logs
dir_not_empty.txt
conf
chipster-config.xml
wrapper.conf
shared-directory-mappings.xml
genpasswd.sh
auth
security
dir_not_empty.txt
users
chipster-auth-generic
chipster-auth
chipster-auth.sh
logs
dir_not_empty.txt
conf
chipster-config.xml
jaas.config
wrapper.conf
manager
security
dir_not_empty.txt
testrunner
sessions
tool-tests.sh
chipster-manager
logs
dir_not_empty.txt
conf
chipster-config.xml
wrapper.conf
chipster-manager-generic
chipster
shared
bin
chipster-generic.sh
activemq
wrapper
linux-x86-64
wrapper.conf
linux-x86-32
wrapper.conf
activemq
activemq.xml
java
log4j.properties
htsjdk
samtools
reference
PicardIndexedFastaSequenceFile.java
ChipsterIndexedFastaSequenceFile.java
ChipsterFastaSequenceIndex.java
fi
csc
microarray
security
CryptoKey.java
SecureSessionPool.java
description
SADLParser.java
SADLTokeniser.java
SADLSyntax.java
SADLGenerator.java
SADLDescription.java
package.html
GenericInputTypes.java
comp
OnDiskCompJobBase.java
InterpreterJobFactory.java
ResourceMonitor.java
ProcessPool.java
JobCancelledException.java
JobFactory.java
CompJob.java
ResultCallback.java
RuntimeRepository.java
ProcessUtils.java
CompServer.java
RetryException.java
python
PythonCompJob.java
PythonJobFactory.java
package.html
ToolDescriptionGenerator.java
java
FailingCompJob.java
JavaJobFactory.java
JavaCompJobBase.java
package.html
r
RJobFactory.java
RCompJob.java
package.html
ToolDescription.java
ProcessMonitor.java
CompException.java
package.html
ToolRuntime.java
jobmanager
HibernateUtil.java
JobManager.java
model
JobManagerDB.java
Job.java
client
dialog
FeedbackDialog.java
URLImportDialog.java
ErrorDialogUtils.java
CreateFromTextDialog.java
ClipboardImportDialog.java
SessionRestoreDialog.java
DialogInfo.java
TaskImportDialog.java
LoginDialog.java
ImportSettingsAccessory.java
ChipsterDialog.java
package.html
SequenceImportDialog.java
ClientConstants.java
dataimport
Delimiter.java
ActionChooserScreen.java
ConversionModel.java
ColumnType.java
ImportItem.java
trimmer
DataTrimmer.java
NormalStringReplace.java
DataTrimmingOperation.java
ReqularExpressionStringReplace.java
package.html
ImportSession.java
ImportScreen.java
table
ImportPreviewTable.java
EditableHeaderTableColumn.java
TableInternalFrame.java
PanelTableHeaderEditor.java
EditableHeaderUI.java
package.html
PanelTableHeaderRenderer.java
EditableHeader.java
InformationDialog.java
FileAnalyser.java
RunnableImportProcess.java
ImportUtils.java
ImportScreenModel.java
tools
ToolsInternalFrame.java
ChipCountPanel.java
package.html
DataTrimmingPanel.java
ProgressInformator.java
DataColumn.java
package.html
ColumnTypeManager.java
ColumnTypePattern.java
events
ColumnTypeChangedEvent.java
DecimalSeparatorChangedEvent.java
DelimiterChangedEvent.java
ColumnTypeChangeSupport.java
ConversionModelChangeListener.java
TableRowChangeEvent.java
ColumnTitlesChangedEvent.java
ConversionModelChangeSupport.java
ImportChangeEvent.java
ChipNumberChangedEvent.java
ColumnTypeChangeListener.java
HeaderChangedEvent.java
ChipCountChangeEvent.java
FooterChangedEvent.java
package.html
InputFileChangedEvent.java
TitleRowChangedEvent.java
Authenticator.java
dataview
GraphPanel.java
PositionChangeAnimator.java
ScrollAnimator.java
TreePanel.java
package.html
MicroarrayGraph.java
AnimatorScrollable.java
LayoutManager.java
waiting
WaitGlassPane.java
HelpMapping.java
screen
ShowSourceScreen.java
Screen.java
ChildScreenPool.java
ScreenBase.java
TaskManagerScreen.java
HistoryScreen.java
package.html
StatusBar.java
cli
CliClient.java
UserErrorException.java
CliClientApplication.java
ToolBarComponentFactory.java
workflow
api
WfDataBean.java
WfSelectionManager.java
WfOperation.java
WfOperationDefinition.java
WfResultBlocker.java
package.html
WfApplication.java
WorkflowManager.java
WorkflowWriter.java
package.html
ClientListener.java
visualisation
VisualisationMethodRepository.java
VisualisationFrameManager.java
TableAnnotationProvider.java
VisualisationToolBar.java
Visualisation.java
ExternalVisualisationFrame.java
VisualisationMethodChangedEvent.java
VisualisationMethod.java
ComboBoxItemRenderer.java
NonScalableChartPanel.java
VisualisationFrame.java
VisualisationTaskManager.java
SelectionList.java
methods
SelectableChartPanel.java
EmptyVisualisation.java
RowSelection.java
ChipVisualisation.java
SessionDetails.java
Empty.java
SOM.java
HtmlViewer.java
Scatterplot.java
ArrayLayout.java
VennDiagram.java
threed
RoundGradientContext.java
Line.java
Scatterplot3D.java
CoordinateArea.java
DataPoint.java
DataModel.java
Matrix.java
ColorScalePanel.java
Projection.java
Text.java
RoundGradientPaint.java
Drawable.java
package.html
AutomatedMovement.java
ImageViewer.java
TextViewer.java
Volcanoplot.java
Scatterplot3DPCA.java
Heatmap.java
Histogram.java
DataRowSelection.java
ModifiedPlot.java
hc
OrderSuperviser.java
ExternalBrowserViewer.java
HierarchicalClustering.java
PDFViewer.java
DataDetails.java
PhenodataEditor.java
ClusteredProfiles.java
Spreadsheet.java
SamBamViewer.java
ExpressionProfile.java
package.html
ChipsterGBrowserVisualisation.java
VenndiPlot.java
gbrowser
GBrowserStarter.java
fileIndex
IndexedFastaConversion.java
IndexedFastaDataSource.java
BamDataSource.java
ConcisedValueCache.java
BamToCoverageEstimateConversion.java
GtfToFeatureConversion.java
BamToDetailsConversion.java
TabixDataSource.java
package.html
CoverageTool.java
BamToCoverageConversion.java
track
PassiveItem.java
BedTrackGroup.java
CoverageAverageTrack.java
GeneTrack.java
TrackGroup.java
QualityCoverageTrack.java
ScatterplotTrack.java
ReadPileTrack.java
LayoutParent.java
CoverageTrack.java
AnnotationTrackGroup.java
CnaFrequenciesTrackGroup.java
LayoutChild.java
CnaCallsTrackGroup.java
StatusAnimation.java
SeparatorTrack3D.java
RepeatMaskerTrack.java
CnaTrackGroup.java
RulerTrack.java
CoverageEstimateTrack.java
TitleTrack.java
TrackFactory.java
ScaleTrack.java
SampleTrackGroup.java
Track.java
CnaLogRatiosTrackGroup.java
RegionTrackGroup.java
CnaFlagTrack.java
PeakSelectable.java
ReferenceSequenceTrack.java
EmptyTrack.java
DensityGraphTrack.java
SeparatorTrack.java
Selectable.java
package.html
LayoutUpdater.java
CytobandTrack.java
ScatterplotPoint.java
RegionTrack.java
TranscriptTrack.java
util
ChromosomeNormaliser.java
NcbiGff3ToGtf.java
ChromosomeNameUnnormaliser.java
ArtemisGffToGtf.java
GtfUtil.java
GenbankToGtf.java
TsvSorter.java
SamBamUtils.java
GBrowserException.java
RegionOperations.java
UnsortedDataException.java
GtfSort.java
package.html
CoverageStorage.java
BaseStorage.java
gui
Interpretation.java
AnnotationManager.java
HorizontalView.java
BrowserSelectionListener.java
GBrowserConstants.java
RectDrawable.java
GBrowserLegend.java
GBrowserView.java
SelectionManager.java
DataUrl.java
QueueManager.java
OverviewHorizontalView.java
TextDrawable.java
ScrollGroup.java
SelectionPanel.java
LineDrawable.java
ViewLimiter.java
GBrowserSettings.java
GenomeInfo.java
GBrowserPlot.java
GeneIndexActions.java
Drawable.java
package.html
LayoutTool.java
RegionListener.java
runtimeIndex
LineParser.java
TsvLineParser.java
GtfLineParser.java
CnaLineParser.java
VcfLine.java
LineDataSource.java
SearchIndexConversion.java
Index.java
VcfLineParser.java
BedLine.java
FileLine.java
AbstractTsvLineParser.java
CnaConversion.java
RandomAccessLineReader.java
CytobandLineParser.java
ScatterplotFileLineConversion.java
FileLineConversion.java
BinarySearchIndex.java
RandomAccessLineDataSource.java
BedTabixToRegionConversion.java
InMemoryIndex.java
ByteDataSource.java
TsvLine.java
CytobandConversion.java
DataThread.java
DataSource.java
SelectionText.java
ChromosomeBinarySearch.java
ScatterplotValue.java
BedLineParser.java
package.html
message
Sequence.java
ConfigurableRegionRequest.java
DataType.java
ReadPart.java
DataResultListener.java
PositionAndStringKey.java
Strand.java
DataRequest.java
RegionDouble.java
Region.java
SearchRequest.java
IndexKey.java
CigarItem.java
Cytoband.java
SynonymReplace.java
Cigar.java
GeneResult.java
Chromosome.java
BpCoordDouble.java
DataResult.java
BpCoord.java
DataStatus.java
GeneSet.java
Transcript.java
CnaRow.java
Feature.java
Exon.java
Gene.java
package.html
ChipsterAnnotationsScreen.java
GBrowser.java
package.html
InternalVisualisationFrame.java
VisualisationUtilities.java
package.html
ExtendedJXTable.java
SwingClientApplication.java
selection
PointSelectionEvent.java
IntegratedEntity.java
DataSelectionManager.java
DatasetChoiceEvent.java
IntegratedSelectionManager.java
SelectionEvent.java
package.html
serverfiles
ServerFile.java
ServerFileSystemView.java
ServerFileUtils.java
Session.java
Frames.java
ClientContextMenu.java
QuickLinkPanel.java
ServiceAccessor.java
tasks
ResultBlocker.java
Task.java
TaskException.java
TaskEventListener.java
package.html
TaskExecutor.java
LocalTaskExecutor.java
operation
OperationDefinition.java
ToolModule.java
Operation.java
parameter
DecimalParameter.java
SteppedComboBox.java
ToolParameterPanel.java
PercentageParameter.java
EnumParameter.java
DecimalInputComponent.java
SingleSelectionInputComponent.java
Parameter.java
IntegerInputComponent.java
MultipleSelectionInputComponent.java
DataSelectionParameter.java
MetaColnameParameter.java
ColnameParameter.java
ParameterInputComponent.java
StringInputComponent.java
InputParameters.java
ImportParameterPanel.java
StringParameter.java
IntegerParameter.java
ParameterPanel.java
InputSelectParameter.java
package.html
PercentageInputComponent.java
InputFileComponent.java
OperationRecord.java
ToolCategory.java
ToolPanel.java
ExecutionItem.java
ColoredCircleIcon.java
ToolSelectorPanel.java
ToolFilterPanel.java
package.html
RemoteServiceAccessor.java
LocalServiceAccessor.java
ClientApplication.java
AtEndListener.java
dataviews
vertexes
GraphVertex.java
PhenodataVertex.java
AbstractGraphVertex.java
GraphRenderer.java
GroupVertex.java
MicroarrayMenuBar.java
package.html
ClientFocusTraversalPolicy.java
session
RemoteSessionAccessory.java
session.xsd
SessionManager.java
UserSession.java
RemoteSessionChooserFactory.java
NonStoppingValidationEventHandler.java
SessionLoader.java
session2.xsd
SessionLoaderImpl2.java
SessionLoaderImpl1.java
schema2
SessionType.java
DataType.java
ObjectFactory.java
InputType.java
NameType.java
OperationType.java
LinkType.java
LocationType.java
FolderType.java
ParameterType.java
schema
SessionType.java
DataType.java
ObjectFactory.java
InputType.java
NameType.java
OperationType.java
LinkType.java
FolderType.java
ParameterType.java
SessionSaver.java
NameID.java
databeans
DataChangeListener.java
HistoryText.java
LinkUtils.java
LinksChangedEvent.java
DataChangeEvent.java
DataItem.java
ContentType.java
DataManager.java
handlers
ZipContentHandler.java
LocalFileContentHandler.java
ContentHandler.java
RemoteContentHandler.java
DataItemBase.java
ContentChangedEvent.java
DataBeanSelector.java
DataItemCreatedEvent.java
DataFolder.java
features
FeatureProviderBase.java
FeatureBase.java
bio
IdentifierProvider.java
NormalisedExpressionProvider.java
PhenodataProvider.java
package.html
BoolTrueFeature.java
BasicFeature.java
FeatureProvider.java
ConstantFloatFeature.java
table
EditableTable.java
HeaderProvider.java
TableColumnProvider.java
TableBeanEditor.java
DynamicallyParsedTable.java
package.html
ConstantStringFeature.java
NonexistingFeature.java
BoolFalseFeature.java
ModifiedFeature.java
RestrictModifier.java
ConstantTableFeature.java
RequestExecuter.java
Table.java
Feature.java
QueryResult.java
stat
CalcModifier.java
SomClusterProvider.java
HierarchicalClusterProvider.java
NegModifier.java
package.html
LogModifier.java
package.html
Modifier.java
CalculatingIterable.java
DataBean.java
TypeTag.java
package.html
DataItemRemovedEvent.java
module
Module.java
sequence
SequenceModule.java
ModuleManager.java
basic
BasicModule.java
chipster
ChipsterInputTypes.java
KielipankkiModule.java
MicroarrayModule.java
ChipsterSADLParser.java
package.html
util
SystemMonitorUtil.java
StringValidator.java
XmlUtil.java
BrowserLauncher.java
AdvancedStringTokenizer.java
SwingTools.java
BamUtils.java
SslTest.java
LinkUtil.java
UrlTransferUtil.java
LookaheadStringReader.java
InputStreamSource.java
LangUtil.java
HttpRangeTest.java
Exceptions.java
Files.java
SplashScreen.java
ToolUtils.java
FileCleanUpTimerTask.java
FloatArrayList.java
Emails.java
SocketFactoryCache.java
BitTwiddling.java
Version.java
ZipUtils.java
ScaleUtil.java
BrowsableHtmlPanel.java
IOUtils.java
ImageExportUtils.java
ThreadUtils.java
GeneralFileFilter.java
CommandLineParser.java
Strings.java
package.html
LookaheadLineReader.java
KeyAndTrustManager.java
FloatArrayListIterator.java
filebroker
ChecksumInputStream.java
RestServlet.java
ExampleSessionUpdater.java
AuthorisedUrlRepository.java
SimpleFileBrokerClient.java
FileServer.java
JettyFileServer.java
DerbyMetadataServer.java
JMSFileBrokerClient.java
DbFile.java
FileBrokerClient.java
ChecksumParseException.java
WelcomePage.java
JettyCheckTimerTask.java
DiskCleanUp.java
NotEnoughDiskSpaceException.java
DbSession.java
FileBrokerException.java
ContentLengthException.java
Md5FileUtils.java
FileServerAdminTools.java
ChecksumException.java
FileBrokerAreas.java
QuotaExceededException.java
package.html
ServerSessionImportExportTool.java
config
ConfigurationModule.java
Configuration.java
ConfigurationEntry.java
DirectoryLayout.java
ConfigurationLoader.java
ConfigTool.java
package.html
service
ShutdownCallback.java
KeepAliveShutdownHandler.java
exception
ErrorReportAsException.java
MicroarrayException.java
constants
VisualConstants.java
ApplicationConstants.java
webstart
JnlpServlet.java
WebstartJettyServer.java
package.html
auth
JaasAuthenticationProvider.java
Authenticator.java
SimpleFileLoginModule.java
UnixCryptLoginModule.java
AuthorisationException.java
AuthenticationProvider.java
package.html
LoginModuleBase.java
manager
LogParser.java
ManagerClient.java
LogImport.java
BackupRotation.java
Manager.java
MicroarrayMain.java
cluster
ClusterLeafNode.java
ClusterBranchNode.java
TreeParseException.java
ClusterNode.java
package.html
ClusterParser.java
messaging
JsonMessageListener.java
AuthCancelledException.java
DescriptionMessageListener.java
MonitoredNode.java
MessagingEndpoint.java
TempTopicMessagingListenerBase.java
MessagingListener.java
NodeBase.java
admin
StorageAggregate.java
JobmanagerAdminAPI.java
StorageEntry.java
AdminAPI.java
JobsEntry.java
ManagerConfiguration.java
CompAdminAPI.java
StorageAdminAPI.java
CompAdmin.java
ServerAdminAPI.java
JobState.java
Topics.java
MessageListenerWrapper.java
Node.java
DirectMessagingListener.java
message
ParameterMessage.java
CommandMessage.java
ResultMessage.java
ChipsterMessage.java
SourceMessage.java
JobMessage.java
JobLogMessage.java
UrlListMessage.java
FeedbackMessage.java
ModuleDescriptionMessage.java
JsonMessage.java
JobMessageUtils.java
ServerStatusMessage.java
GenericJobMessage.java
BooleanMessage.java
PayloadMessage.java
AuthenticationMessage.java
SuccessMessage.java
package.html
UrlMessage.java
GenericResultMessage.java
MessagingTopic.java
FirstLoginListener.java
BooleanMessageListener.java
SourceMessageListener.java
UrlMessageListener.java
MonitoredNodeBase.java
DirectMessagingTopic.java
JMSMessagingEndpoint.java
TempTopicMessagingListener.java
auth
SimpleAuthenticationRequestListener.java
ClientLoginListener.java
AuthenticatedTopic.java
AuthenticationRequestListener.java
package.html
ReplyMessageListener.java
UrlListMessageListener.java
package.html
MultiplexingMessagingListener.java
DirectMessagingEndpoint.java
SuccessMessageListener.java
AuthMessagingListener.java
package.html
chipster
util
StringUtils.java
toolbox
ToolboxTool.java
ToolboxRestUtils.java
SADLTool.java
RuntimeUtils.java
ToolboxClientComp.java
dev
toolchecker
ToolChecker.java
tools
gbrowser
TestJavaTool.java
ChipsterMain.java
log4j-enabled.properties
com
jgoodies
uif_lite
panel
SimpleInternalFrame.java
MANIFEST.MF
workflows
protein-expression-analysis.bsh
mirna-expression-analysis.bsh
gene-expression-analysis.bsh
modules
ngs
java
fi
csc
chipster
tools
ngs
GtfGenes.java
regions
CombineRegionsTool.java
RemoveOverlappingTool.java
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