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Project: snomed-owl-toolkit (GitHub Link)
  • snomed-owl-toolkit-master
    • src
      • main
        • resources
          • owl-file-copyright-notice.txt
          • log4j.properties
          • language-refset-dialect-map.properties
        • java
          • org
            • snomed
              • otf
                • owltoolkit
                  • taxonomy
                    • SnomedTaxonomyLoader.java
                    • SnomedTaxonomy.java
                    • AxiomDeserialiser.java
                    • SnomedTaxonomyBuilder.java
                    • Description.java
                  • classification
                    • ReasonerTaxonomyWalker.java
                    • ReasonerTaxonomyEntry.java
                    • ReasonerTaxonomy.java
                  • conversion
                    • RF2ToOWLService.java
                    • StatedRelationshipToOwlRefsetService.java
                    • ConversionException.java
                    • AxiomRelationshipConversionService.java
                    • OWLAxiomToStatedRelationshipService.java
                  • util
                    • TimerUtil.java
                    • OptionalFileInputStream.java
                    • InputStreamSet.java
                  • service
                    • ReasonerServiceRuntimeException.java
                    • SnomedReasonerService.java
                    • ReasonerServiceException.java
                    • ClassificationResultsWriter.java
                  • constants
                    • Concepts.java
                    • RF2Headers.java
                  • ontology
                    • OntologyHelper.java
                    • render
                      • SnomedPrefixManager.java
                      • SnomedFunctionalSyntaxDocumentFormat.java
                      • SnomedFunctionalSyntaxStorerFactory.java
                      • SnomedFunctionalSyntaxStorer.java
                    • PropertyChain.java
                    • OntologyService.java
                    • OntologyDebugUtil.java
                  • domain
                    • Relationship.java
                    • ObjectPropertyAxiomRepresentation.java
                    • AxiomRepresentation.java
                  • normalform
                    • RelationshipNormalFormGenerator.java
                    • transitive
                      • NodeGraph.java
                      • Node.java
                    • RelationshipChangeProcessor.java
                    • internal
                      • SemanticComparable.java
                      • GroupSet.java
                      • UnionGroup.java
                      • Group.java
                      • RelationshipFragment.java
                    • OntologyChange.java
                    • RelationshipInactivationProcessor.java
                  • Application.java
      • test
        • resources
          • SnomedCT_MiniRF2_Base_snapshot
            • Snapshot
              • Terminology
                • sct2_sRefset_OWLOntologySnapshot_INT_20180731.txt
                • sct2_Concept_Snapshot_INT_20180731.txt
                • sct2_Description_Snapshot-en_INT_20180731.txt
                • sct2_StatedRelationship_Snapshot_INT_20180731.txt
                • sct2_sRefset_OWLAxiomSnapshot_INT_20180731.txt
                • sct2_Relationship_Snapshot_INT_20180731.txt
          • SnomedCT_MiniRF2_Add_Laterality_delta
            • Delta
              • Terminology
                • sct2_StatedRelationship_Delta_INT_20180931.txt
                • sct2_Concept_Delta_INT_20180931.txt
                • sct2_Description_Delta-en_INT_20180931.txt
                • sct2_Relationship_Delta_INT_20180931.txt
          • SnomedCT_MiniRF2_Base_with_Axioms_snapshot
            • Snapshot
              • Terminology
                • sct2_sRefset_OWLOntologySnapshot_INT_20180731.txt
                • sct2_Concept_Snapshot_INT_20180731.txt
                • sct2_Description_Snapshot-en_INT_20180731.txt
                • sct2_StatedRelationship_Snapshot_INT_20180731.txt
                • sct2_sRefset_OWLAxiomSnapshot_INT_20180731.txt
                • sct2_Relationship_Snapshot_INT_20180731.txt
          • SnomedCT_MiniRF2_Add_Attribute_with_two_parents_delta
            • Delta
              • Terminology
                • sct2_sRefset_OWLAxiomDelta_INT_20170731.txt
                • sct2_Relationship_Delta_INT_20170731.txt
                • sct2_Concept_Delta_INT_20170731.txt
                • sct2_StatedRelationship_Delta_INT_20170731.txt
          • SnomedCT_MiniRF2_Add_Attribute_delta
            • Delta
              • Terminology
                • sct2_sRefset_OWLAxiomDelta_INT_20170731.txt
                • sct2_Relationship_Delta_INT_20170731.txt
                • sct2_Concept_Delta_INT_20170731.txt
                • sct2_StatedRelationship_Delta_INT_20170731.txt
          • SnomedCT_MiniRF2_Concept_Reactivation_delta
            • Delta
              • Terminology
                • sct2_sRefset_OWLAxiomDelta_INT_20170731.txt
                • sct2_Relationship_Delta_INT_20170731.txt
                • sct2_Concept_Delta_INT_20170731.txt
                • sct2_StatedRelationship_Delta_INT_20170731.txt
          • SnomedCT_MiniRF2_Secondary_Diabetes_GCI_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_INT_20180731.txt
                • sct2_Concept_Delta_INT_20180731.txt
                • sct2_StatedRelationship_Delta_INT_20180731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20180731.txt
          • SnomedCT_MiniRF2_Base_CompleteOwl_snapshot
            • Snapshot
              • Terminology
                • sct2_Description_Snapshot-en_INT_20190131.txt
                • sct2_sRefset_OWLOntologySnapshot_INT_20190131.txt
                • sct2_sRefset_OWLAxiomSnapshot_INT_20190131.txt
                • sct2_Relationship_Snapshot_INT_20190131.txt
                • sct2_Concept_Snapshot_INT_20190131.txt
                • sct2_StatedRelationship_Snapshot_INT_20190131.txt
          • SnomedCT_MiniRF2_MidAuthoringCycle_delta
            • Delta
              • Terminology
                • sct2_StatedRelationship_Delta_INT_20190731.txt
                • sct2_Relationship_Delta_INT_20190731.txt
                • sct2_Concept_Delta_INT_20190731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20190731.txt
          • SnomedCT_MiniRF2_Equivalence_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_INT_20180731.txt
                • sct2_Concept_Delta_INT_20180731.txt
                • sct2_StatedRelationship_Delta_INT_20180731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20180731.txt
          • SnomedCT_MiniRF2_Concept_Inactivation_snapshot
            • Snapshot
              • Terminology
                • sct2_Concept_Snapshot_INT_20170131.txt
                • sct2_Relationship_Snapshot_INT_20170131.txt
                • sct2_StatedRelationship_Snapshot_INT_20170131.txt
                • sct2_Description_Snapshot-en_INT_20170131.txt
                • sct2_sRefset_OWLAxiomSnapshot_INT_20170131.txt
          • SnomedCT_MiniRF2_Anatomy_Transitive_Reflexive_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_INT_20180731.txt
                • sct2_Concept_Delta_INT_20180731.txt
                • sct2_StatedRelationship_Delta_INT_20180731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20180731.txt
              • Refset
                • MRCM
                  • der2_cissccRefset_MRCMAttributeDomainDelta_INT_20180731.txt
          • SnomedCT_MiniRF2_Base_some_Inactive_snapshot
            • Snapshot
              • Terminology
                • sct2_sRefset_OWLOntologySnapshot_INT_20180731.txt
                • sct2_Concept_Snapshot_INT_20180731.txt
                • sct2_Description_Snapshot-en_INT_20180731.txt
                • sct2_StatedRelationship_Snapshot_INT_20180731.txt
                • sct2_sRefset_OWLAxiomSnapshot_INT_20180731.txt
                • sct2_Relationship_Snapshot_INT_20180731.txt
          • SnomedCT_MiniRF2_Base_with_Anthrax_snapshot
            • Snapshot
              • Terminology
                • sct2_Concept_Snapshot_INT_20180731.txt
                • sct2_Description_Snapshot-en_INT_20180731.txt
                • sct2_StatedRelationship_Snapshot_INT_20180731.txt
                • sct2_sRefset_OWLAxiomSnapshot_INT_20180731.txt
                • sct2_Relationship_Snapshot_INT_20180731.txt
          • SnomedCT_MiniRF2_Base_with_extra_attribute_snapshot
            • Snapshot
              • Terminology
                • sct2_sRefset_OWLOntologySnapshot_INT_20180731.txt
                • sct2_Concept_Snapshot_INT_20180731.txt
                • sct2_Description_Snapshot-en_INT_20180731.txt
                • sct2_StatedRelationship_Snapshot_INT_20180731.txt
                • sct2_sRefset_OWLAxiomSnapshot_INT_20180731.txt
                • sct2_Relationship_Snapshot_INT_20180731.txt
          • SnomedCT_MiniRF2_Base_extra_descriptions
            • Delta
              • Terminology
                • sct2_StatedRelationship_Delta_INT_20190131.txt
                • sct2_Description_Delta-en_INT_20190131.txt
                • sct2_Relationship_Delta_INT_20190131.txt
                • sct2_Concept_Delta_INT_20190131.txt
              • Refset
                • Language
                  • der2_cRefset_LanguageDelta-en_INT_20190131.txt
          • SnomedCT_MiniRF2_Active_Ingredient_Property_Chain_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_INT_20180731.txt
                • sct2_Concept_Delta_INT_20180731.txt
                • sct2_StatedRelationship_Delta_INT_20180731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20180731.txt
              • Refset
                • MRCM
                  • der2_cissccRefset_MRCMAttributeDomainDelta_INT_20180731.txt
          • SnomedCT_MiniRF2_Extension_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_ExtensionA_20190901.txt
                • sct2_sRefset_OWLOntologyDelta_ExtensionA_20190901.txt
                • sct2_StatedRelationship_Delta_ExtensionA_20190901.txt
                • sct2_Description_Delta-en_ExtensionA_20190901.txt
                • sct2_sRefset_OWLAxiomDelta_ExtensionA_20190901.txt
                • sct2_Concept_Delta_ExtensionA_20190901.txt
          • SnomedCT_MiniRF2_Empty_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_INT_20180731.txt
                • sct2_Concept_Delta_INT_20180731.txt
                • sct2_StatedRelationship_Delta_INT_20180731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20180731.txt
          • SnomedCT_MiniRF2_Add_Diabetes_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_INT_20180731.txt
                • sct2_Concept_Delta_INT_20180731.txt
                • sct2_StatedRelationship_Delta_INT_20180731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20180731.txt
          • SnomedCT_MiniRF2_Concept_Inactivation_delta
            • Delta
              • Terminology
                • sct2_sRefset_OWLAxiomDelta_INT_20170731.txt
                • sct2_Relationship_Delta_INT_20170731.txt
                • sct2_Concept_Delta_INT_20170731.txt
                • sct2_StatedRelationship_Delta_INT_20170731.txt
          • SnomedCT_MiniRF2_Triangle_Additional_Axiom_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_INT_20180731.txt
                • sct2_Concept_Delta_INT_20180731.txt
                • sct2_StatedRelationship_Delta_INT_20180731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20180731.txt
          • SnomedCT_MiniRF2_OWLDataProperty_delta
            • Delta
              • Terminology
                • sct2_Concept_Delta_INT_20180801.txt
                • sct2_StatedRelationship_Delta_INT_20180801.txt
                • sct2_Relationship_Delta_INT_20180801.txt
          • SnomedCT_MiniRF2_Inactivate_Attribute_delta
            • Delta
              • Terminology
                • sct2_sRefset_OWLAxiomDelta_INT_20170731.txt
                • sct2_Relationship_Delta_INT_20170731.txt
                • sct2_Concept_Delta_INT_20170731.txt
                • sct2_StatedRelationship_Delta_INT_20170731.txt
          • SnomedCT_MiniRF2_Change_Axiom_Parents_delta
            • Delta
              • Terminology
                • sct2_Relationship_Delta_INT_20180731.txt
                • sct2_Concept_Delta_INT_20180731.txt
                • sct2_StatedRelationship_Delta_INT_20180731.txt
                • sct2_sRefset_OWLAxiomDelta_INT_20180731.txt
          • SnomedCT_MiniRF2_Extension_snapshot
            • Snapshot
              • Terminology
                • sct2_Relationship_Snapshot_ExtensionA_20180931.txt
                • sct2_StatedRelationship_Snapshot_ExtensionA_20180931.txt
                • sct2_Description_Snapshot-en_ExtensionA_20180931.txt
                • sct2_sRefset_OWLAxiomSnapshot_ExtensionA_20180931.txt
                • sct2_sRefset_OWLOntologySnapshot_ExtensionA_20180931.txt
                • sct2_Concept_Snapshot_ExtensionA_20180931.txt
        • java
          • org
            • snomed
              • otf
                • owltoolkit
                  • ApplicationTest.java
                  • AxiomRelationshipConversionServiceTest.java
                  • conversion
                    • StatedRelationshipToOwlRefsetServiceTest.java
                    • ConversionIntegrationTest.java
                    • RF2ToOWLServiceTest.java
                    • GroupZeroConversionIntegrationTest.java
                  • service
                    • classification
                      • TransitiveReflexiveClassificationIntegrationTest.java
                      • GCIClassificationIntegrationTest.java
                      • TestFileUtil.java
                      • AxiomModificationClassificationIntegrationTest.java
                      • AdditionalAxiomClassificationIntegrationTest.java
                      • PropertyChainClassificationIntegrationTest.java
                      • EquivalenceClassificationIntegrationTest.java
                      • SimpleExtensionClassificationIntegrationTest.java
                      • SimpleClassificationIntegrationTest.java
                    • SnomedReasonerServiceManual.java
                  • ontology
                    • OntologyServiceTest.java
    • mid-cycle-international-complete-owl-conversion.sh
    • pom.xml
    • CHANGELOG.md
    • international-complete-owl-conversion.sh
    • documentation
      • calculating-necessary-normal-form.md
    • .travis.yml
    • readme.md
    • .gitignore
    • LICENSE.txt
    • extension-complete-owl-conversion.sh