Java Code Examples for java.util.HashMap#get()

The following examples show how to use java.util.HashMap#get() . These examples are extracted from open source projects. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. You may want to check out the right sidebar which shows the related API usage.
Example 1
/**
 * Gets document parameters and return a string in the form &param1=value1&param2=value2 ...
 * 
 * @param drillParameters the drill parameters
 * 
 * @return the document_ parameters
 */

public String getDocument_Parameters(HashMap<String, DrillParameter> _drillParametersMap) { 
	logger.debug("IN");
	String document_parameter="";
	if(_drillParametersMap!=null){
		for (Iterator iterator = _drillParametersMap.keySet().iterator(); iterator.hasNext();) {
			String name = (String) iterator.next();
			DrillParameter drillPar=(DrillParameter)_drillParametersMap.get(name);
			String value=drillPar.getValue();
			if(name!=null && !name.equals("") && value!=null && !value.equals("")){
				document_parameter+="%26"+name+"%3D"+value;
				//document_parameter+="&"+name+"="+value;
			}
		}
	} 
	logger.debug("OUT");
	return document_parameter;
}
 
Example 2
private void findLeafPage(BTreePage p, HashMap<PageOperationHandler, Integer> map, AtomicLong leafPageCount) {
    if (p.isNode()) {
        for (PageReference ref : p.getChildren()) {
            BTreePage child = ref.getPage();
            if (child.isLeaf()) {
                PageOperationHandler handler = child.getHandler();
                // System.out.println("handler: " + handler);
                Integer count = map.get(handler);
                if (count == null)
                    count = 1;
                else
                    count++;
                map.put(handler, count);
                leafPageCount.incrementAndGet();
            } else {
                findLeafPage(child, map, leafPageCount);
            }
        }
    }
}
 
Example 3
Source Project: gemfirexd-oss   File: Validator.java    License: Apache License 2.0 6 votes vote down vote up
/**
 * The following task is used for client Q conflation tests. Similar to
 * checkForConflation task but the task fails if the individual client events
 * are not conflated. (checkForConflation validation pass if there is atleast
 * one event conflated in the total test.
 */
public static void checkClientConflation() {

  PoolImpl pool = HAClientQueue.mypool;
  ClientProxyMembershipID cpm = pool.getProxyID();
  String proxyIdStr = cpm.toString();
  Log.getLogWriter().info("Proxy String : " + proxyIdStr);

  HashMap mp = (HashMap)HAClientQueueBB.getBB().getSharedMap()
      .get(proxyIdStr);

  Long numOfPuts = (Long)mp.get("eventsPut");
  Long numOfConflated = (Long)mp.get("eventsConflated");
  Long numOfMissRemovals = (Long)mp.get("numVoidRemovals");

  Log.getLogWriter().info("value of numOfConflated : " + numOfConflated);

  long totalConflation = HAClientQueueBB.getBB().getSharedCounters().read(
      HAClientQueueBB.NUM_GLOBAL_CONFLATE);
  Log.getLogWriter().info("Total Conflation : " + totalConflation);
  if (numOfConflated.equals(new Long(0))) {
    throw new TestException("No conflation done - Test Issue - needs tuning ");
  }
}
 
Example 4
private static HashMap<Integer, List<Report>> filterReports() {
    HashMap<Integer, List<Report>> filteredReportsByApp = new HashMap<>();
    HashSet<String> filterMap = new HashSet<>();
    String address;
    ArrayList<Report> list;
    ArrayList<Report> filteredList;
    for (int key : mUidReportMap.keySet()) {
        filteredReportsByApp.put(key, new ArrayList<Report>());
        list = (ArrayList<Report>) mUidReportMap.get(key);
        filteredList = (ArrayList<Report>) filteredReportsByApp.get(key);
        filterMap.clear();
        for (int i = 0; i < list.size(); i++) {
            address = list.get(i).remoteAdd.getHostAddress();
            if (!filterMap.contains(address)) {
                filteredList.add(list.get(i));
                filterMap.add(address);
            }
        }
    }
    return filteredReportsByApp;
}
 
Example 5
@RunAsClient
@Test(groups = TEST_GROUP_CDI_JSON,
    description = "Verify that the injected iat claim is as expected from Token2")
public void verifyInjectedIssuedAt2() throws Exception {
    Reporter.log("Begin verifyInjectedIssuedAt2\n");
    HashMap<String, Long> timeClaims = new HashMap<>();
    String token2 = TokenUtils.generateTokenString("/Token2.json", null, timeClaims);
    Long iatClaim = timeClaims.get(Claims.auth_time.name());
    Long authTimeClaim = timeClaims.get(Claims.auth_time.name());
    String uri = baseURL.toExternalForm() + "endp/verifyInjectedIssuedAt";
    WebTarget echoEndpointTarget = ClientBuilder.newClient()
        .target(uri)
        .queryParam(Claims.iat.name(), iatClaim)
        .queryParam(Claims.auth_time.name(), authTimeClaim);
    Response response = echoEndpointTarget.request(MediaType.APPLICATION_JSON).header(HttpHeaders.AUTHORIZATION, "Bearer " + token2).get();
    Assert.assertEquals(response.getStatus(), HttpURLConnection.HTTP_OK);
    String replyString = response.readEntity(String.class);
    JsonReader jsonReader = Json.createReader(new StringReader(replyString));
    JsonObject reply = jsonReader.readObject();
    Reporter.log(reply.toString());
    Assert.assertTrue(reply.getBoolean("pass"), reply.getString("msg"));
}
 
Example 6
Source Project: unitime   File: PreferencesForm.java    License: Apache License 2.0 6 votes vote down vote up
/**
 * Checks that there are no duplicates and that all prior prefs have a value
 * @param lst List of values
 * @return true if checks ok, false otherwise
 */
public boolean checkPrefs(List... lst) {
    
    HashMap map = new HashMap();
    for(int i=0; i<lst[0].size(); i++) {
        String value = ((String) lst[0].get(i));
        // No selection made - ignore
        if( value==null || value.trim().equals(Preference.BLANK_PREF_VALUE)) {
            continue;
        }
        // Add additional columns, when present
        for (int j = 1; j < lst.length; j++)
        	value += "|" + ((String)lst[j].get(i));
        
        // Duplicate selection made
        if(map.get(value.trim())!=null) {
            // lst[0].set(i, Preference.BLANK_PREF_VALUE);
            return false;
        }
        map.put(value, value);
    }
    return true;
}
 
Example 7
/**
 * Creates a UsernameIterator object.
 *
 * @param patterns The patterns to be evaluated as a String array.
 * @param userData The user information, the required fields are at least first name and last
 *        name.
 * @throws Exception
 */
public UsernameIterator(String[] patterns, HashMap<String, String> userData) throws Exception {
  if (userData == null || patterns == null) {
    throw new Exception("The patterns and userData parameters can't be set as null.");
  }
  if (!userData.containsKey(UsernameManager.FIRST_NAME)
      || !userData.containsKey(UsernameManager.LAST_NAME)) {
    throw new Exception(
        "The userData parameter must cointain at least firstname and lastname fields.");
  }
  String firstname = userData.get(UsernameManager.FIRST_NAME);
  String lastname = userData.get(UsernameManager.LAST_NAME);
  if (firstname.length() > UsernameManager.MAX_NAME_LENGTH
      || lastname.length() > UsernameManager.MAX_NAME_LENGTH) {
    throw new Exception("One of the fields exceds the maximum length. 60 (firstname,lastname).");
  }
  this.patterns = patterns;
  this.userData = userData;
  autonumeric = 1;
  patternIndex = 0;
}
 
Example 8
Source Project: systemds   File: BuiltinMiceTest.java    License: Apache License 2.0 6 votes vote down vote up
private void testCategoricalOutput()
{
	HashMap<MatrixValue.CellIndex, Double> dmlfileC = readDMLMatrixFromHDFS("C");
	HashMap<MatrixValue.CellIndex, Double> rfileC  = readRMatrixFromFS("C");

	// compare categorical imputations
	int countTrue = 0;
	for (MatrixValue.CellIndex index : dmlfileC.keySet()) {
		Double v1 = dmlfileC.get(index);
		Double v2 = rfileC.get(index);
		if(v1.equals(v2))
			countTrue++;
	}

	if(countTrue / (double)dmlfileC.size() > 0.98)
		Assert.assertTrue(true);
	else
		Assert.fail();
}
 
Example 9
Source Project: ambari-logsearch   File: SolrUtil.java    License: Apache License 2.0 5 votes vote down vote up
@SuppressWarnings("unchecked")
private static boolean checkTokenizer(Class<? extends TokenizerFactory> tokenizerFactoryClass, Map<String, Object> fieldTypeInfoMap) {
  HashMap<String, Object> analyzer = (HashMap<String, Object>) fieldTypeInfoMap.get("analyzer");
  HashMap<String, Object> tokenizerMap = (HashMap<String, Object>)MapUtils.getObject(analyzer, "tokenizer");
  if (tokenizerMap != null) {
    String tokenizerClass = (String) tokenizerMap.get("class");
    if (StringUtils.isNotEmpty(tokenizerClass)) {
      tokenizerClass = tokenizerClass.replace("solr.", "");
      return tokenizerClass.equalsIgnoreCase(tokenizerFactoryClass.getSimpleName());
    }
  }
  
  return false;
}
 
Example 10
Source Project: android-apps   File: PropertyValuesHolder.java    License: MIT License 5 votes vote down vote up
/**
 * Returns the setter or getter requested. This utility function checks whether the
 * requested method exists in the propertyMapMap cache. If not, it calls another
 * utility function to request the Method from the targetClass directly.
 * @param targetClass The Class on which the requested method should exist.
 * @param propertyMapMap The cache of setters/getters derived so far.
 * @param prefix "set" or "get", for the setter or getter.
 * @param valueType The type of parameter passed into the method (null for getter).
 * @return Method the method associated with mPropertyName.
 */
private Method setupSetterOrGetter(Class targetClass,
        HashMap<Class, HashMap<String, Method>> propertyMapMap,
        String prefix, Class valueType) {
    Method setterOrGetter = null;
    try {
        // Have to lock property map prior to reading it, to guard against
        // another thread putting something in there after we've checked it
        // but before we've added an entry to it
        mPropertyMapLock.writeLock().lock();
        HashMap<String, Method> propertyMap = propertyMapMap.get(targetClass);
        if (propertyMap != null) {
            setterOrGetter = propertyMap.get(mPropertyName);
        }
        if (setterOrGetter == null) {
            setterOrGetter = getPropertyFunction(targetClass, prefix, valueType);
            if (propertyMap == null) {
                propertyMap = new HashMap<String, Method>();
                propertyMapMap.put(targetClass, propertyMap);
            }
            propertyMap.put(mPropertyName, setterOrGetter);
        }
    } finally {
        mPropertyMapLock.writeLock().unlock();
    }
    return setterOrGetter;
}
 
Example 11
private static boolean isAValidCategoryOptionCombo(
        HashMap<String, List<CategoryCombo>> dataElementCategoryOptionRelation, Field field) {
    for (CategoryCombo categoryCombo : dataElementCategoryOptionRelation.get(
            field.getDataElement())) {
        for (String categoryOptionComboUId : categoryCombo.getCategoryOptionComboUIdList()) {
            if (field.getCategoryOptionCombo().equals(categoryOptionComboUId)) {
                return true;
            }
        }
    }
    return false;
}
 
Example 12
public void applyGraphResults(DirectedGraph graph, HashMap map){
	Node node = (Node)map.get(this);
	((CFGNodeFigure)getFigure()).setBounds(new Rectangle(node.x, node.y, node.width, node.height));//getFigure().getBounds().height));//getFigure().getBounds().height));
	List outgoing = getSourceConnections();
	for (int i = 0; i < outgoing.size(); i++){
		CFGEdgeEditPart edge = (CFGEdgeEditPart)outgoing.get(i);
		edge.applyGraphResults(graph, map);
	}

}
 
Example 13
Source Project: TrakEM2   File: LayerSet.java    License: GNU General Public License v3.0 5 votes vote down vote up
/** Reconstruct from an XML entry. */
public LayerSet(final Project project, final long id, final HashMap<String,String> ht_attributes, final HashMap<Displayable,String> ht_links) {
	super(project, id, ht_attributes, ht_links);
	String data;
	if (null != (data = ht_attributes.get("layer_width"))) this.layer_width = Float.parseFloat(data);
	else xmlError("layer_width", this.layer_width);
	if (null != (data = ht_attributes.get("layer_height"))) this.layer_height = Float.parseFloat(data);
	else xmlError("layer_height", this.layer_height);
	if (null != (data = ht_attributes.get("rot_x"))) this.rot_x = Double.parseDouble(data);
	else xmlError("rot_x", this.rot_x);
	if (null != (data = ht_attributes.get("rot_y"))) this.rot_y = Double.parseDouble(data);
	else xmlError("rot_y", this.rot_y);
	if (null != (data = ht_attributes.get("rot_z"))) this.rot_y = Double.parseDouble(data);
	else xmlError("rot_z", this.rot_z);
	if (null != (data = ht_attributes.get("snapshots_quality"))) snapshots_quality = Boolean.valueOf(data.trim().toLowerCase());
	if (null != (data = ht_attributes.get("snapshots_mode"))) {
		final String smode = data.trim();
		for (int i=0; i<snapshot_modes.length; i++) {
			if (smode.equals(snapshot_modes[i])) {
				snapshots_mode = i;
				break;
			}
		}
	}
	if (null != (data = ht_attributes.get("color_cues"))) color_cues = Boolean.valueOf(data.trim().toLowerCase());
	if (null != (data = ht_attributes.get("area_color_cues"))) area_color_cues = Boolean.valueOf(data.trim().toLowerCase());
	if (null != (data = ht_attributes.get("n_layers_color_cue"))) {
		n_layers_color_cue = Integer.parseInt(data.trim().toLowerCase());
		if (n_layers_color_cue < -1) n_layers_color_cue = -1;
	}
	if (null != (data = ht_attributes.get("avoid_color_cue_colors"))) {
		// If there's any error in the parsing, default to true for use_color_cue_colors:
		use_color_cue_colors = !Boolean.valueOf(data.trim().toLowerCase());
	}
	if (null != (data = ht_attributes.get("paint_arrows"))) paint_arrows = Boolean.valueOf(data.trim().toLowerCase());
	if (null != (data = ht_attributes.get("paint_tags"))) paint_tags = Boolean.valueOf(data.trim().toLowerCase());
	if (null != (data = ht_attributes.get("paint_edge_confidence_boxes"))) paint_edge_confidence_boxes = Boolean.valueOf(data.trim().toLowerCase());
	if (null != (data = ht_attributes.get("prepaint"))) prepaint = Boolean.valueOf(data.trim().toLowerCase());
	if (null != (data = ht_attributes.get("preload_ahead"))) preload_ahead = Integer.parseInt(data);
}
 
Example 14
/**
 * Registers standard transliterators with the system.  Called by
 * Transliterator during initialization.  Scan all current targets
 * and register those that are scripts T as Any-T/V.
 */
static void register() {

    HashMap<String, Set<String>> seen = new HashMap<String, Set<String>>(); // old code used set, but was dependent on order

    for (Enumeration<String> s = Transliterator.getAvailableSources(); s.hasMoreElements(); ) {
        String source = s.nextElement();

        // Ignore the "Any" source
        if (source.equalsIgnoreCase(ANY)) continue;

        for (Enumeration<String> t = Transliterator.getAvailableTargets(source);
             t.hasMoreElements(); ) {
            String target = t.nextElement();

            // Get the script code for the target.  If not a script, ignore.
            int targetScript = scriptNameToCode(target);
            if (targetScript == UScript.INVALID_CODE) {
                continue;
            }

            Set<String> seenVariants = seen.get(target);
            if (seenVariants == null) {
                seen.put(target, seenVariants = new HashSet<String>());
            }

            for (Enumeration<String> v = Transliterator.getAvailableVariants(source, target);
                 v.hasMoreElements(); ) {
                String variant = v.nextElement();

                // Only process each target/variant pair once
                if (seenVariants.contains(variant)) {
                    continue;
                }
                seenVariants.add(variant);

                String id;
                id = TransliteratorIDParser.STVtoID(ANY, target, variant);
                AnyTransliterator trans = new AnyTransliterator(id, target, variant,
                                                                targetScript);
                Transliterator.registerInstance(trans);
                Transliterator.registerSpecialInverse(target, NULL_ID, false);
            }
        }
    }
}
 
Example 15
/**
 * Computes the bounding box of each region within a 3D label image.
 * 
 * @param image
 *            the input image containing label of particles
 * @param labels
 *            the array of labels within the image
 * @param calib
 *            the calibration of the image
 * @return an array of Box3D representing the calibrated coordinates of
 *         the bounding box of each region
 */
public Box3D[] analyzeRegions(ImageStack image, int[] labels, Calibration calib)
{
	// size of image
	int sizeX = image.getWidth();
	int sizeY = image.getHeight();
	int sizeZ = image.getSize();

	// Extract spatial calibration
	double sx = 1, sy = 1, sz = 1;
	double ox = 0, oy = 0, oz = 0;
	if (calib != null)
	{
		sx = calib.pixelWidth;
		sy = calib.pixelHeight;
		sz = calib.pixelDepth;
		ox = calib.xOrigin;
		oy = calib.yOrigin;
		oz = calib.zOrigin;
	}
	
	// create associative array to know index of each label
       HashMap<Integer, Integer> labelIndices = LabelImages.mapLabelIndices(labels);

	// allocate memory for result
	int nLabels = labels.length;
	double[] xmin = new double[nLabels];
	double[] xmax = new double[nLabels];
	double[] ymin = new double[nLabels];
	double[] ymax = new double[nLabels];
	double[] zmin = new double[nLabels];
	double[] zmax = new double[nLabels];
	
	// initialize to extreme values
	for (int i = 0; i < nLabels; i++)
	{
		xmin[i] = Double.POSITIVE_INFINITY;
		xmax[i] = Double.NEGATIVE_INFINITY;
		ymin[i] = Double.POSITIVE_INFINITY;
		ymax[i] = Double.NEGATIVE_INFINITY;
		zmin[i] = Double.POSITIVE_INFINITY;
		zmax[i] = Double.NEGATIVE_INFINITY;
	}

	// compute extreme coordinates of each region
   	fireStatusChanged(this, "Compute bounds");
   	for (int z = 0; z < sizeZ; z++) 
   	{
   		for (int y = 0; y < sizeY; y++) 
   		{
   			for (int x = 0; x < sizeX; x++)
   			{
   				int label = (int) image.getVoxel(x, y, z);
   				if (label == 0)
   					continue;

                   // do not process labels that are not in the input list 
                   if (!labelIndices.containsKey(label))
                       continue;
   				int index = labelIndices.get(label);

   				xmin[index] = Math.min(xmin[index], x);
   				xmax[index] = Math.max(xmax[index], x + 1);
   				ymin[index] = Math.min(ymin[index], y);
   				ymax[index] = Math.max(ymax[index], y + 1);
   				zmin[index] = Math.min(zmin[index], z);
   				zmax[index] = Math.max(zmax[index], z + 1);
   			}
   		}
   	}
   	
	// create bounding box instances
	Box3D[] boxes = new Box3D[nLabels];
	for (int i = 0; i < nLabels; i++)
	{
		boxes[i] = new Box3D(
				xmin[i] * sx + ox, xmax[i] * sx + ox,
				ymin[i] * sy + oy, ymax[i] * sy + oy, 
				zmin[i] * sz + oz, zmax[i] * sz + oz);
	}
	return boxes;
}
 
Example 16
@Execute
public void process() throws Exception {
    checkNull(inElev);
    // extract some attributes of the map
    HashMap<String, Double> attribute = CoverageUtilities.getRegionParamsFromGridCoverage(inElev);
    double dx = attribute.get(CoverageUtilities.XRES);
    CoverageUtilities.getRegionParamsFromGridCoverage(inElev);
    // extract the raster.
    RenderedImage pitTmpRI = inElev.getRenderedImage();
    WritableRaster pitWR = CoverageUtilities.replaceNovalue(pitTmpRI, -9999.0);
    pitTmpRI = null;
    minX = pitWR.getMinX();
    minY = pitWR.getMinY();
    rows = pitWR.getHeight();
    cols = pitWR.getWidth();

    WritableRaster skyWR = skyviewfactor(pitWR, dx);

    int maxY = minY + rows;
    int maxX = minX + cols;
    for( int y = minY + 2; y < maxY - 2; y++ ) {
        for( int x = minX + 2; x < maxX - 2; x++ ) {
            if (pitWR.getSampleDouble(x, y, 0) == -9999.0) {
                skyWR.setSample(x, y, 0, doubleNovalue);
            }
        }
    }
    for( int y = minY; y < maxY; y++ ) {
        skyWR.setSample(0, y, 0, doubleNovalue);
        skyWR.setSample(1, y, 0, doubleNovalue);
        skyWR.setSample(cols - 2, y, 0, doubleNovalue);
        skyWR.setSample(cols - 1, y, 0, doubleNovalue);
    }

    for( int x = minX + 2; x < maxX - 2; x++ ) {
        skyWR.setSample(x, 0, 0, doubleNovalue);
        skyWR.setSample(x, 1, 0, doubleNovalue);
        skyWR.setSample(x, rows - 2, 0, doubleNovalue);
        skyWR.setSample(x, rows - 1, 0, doubleNovalue);
    }
    outSky = CoverageUtilities.buildCoverage("skyview factor", skyWR, attribute, inElev.getCoordinateReferenceSystem());

}
 
Example 17
public static ArrayList<ModelFamilyEC> getActiveModels() {
	ArrayList<ModelFamilyEC> modelFamilies = new ArrayList<>();
	Connection conn = null;
	PreparedStatement sql = null;
	ResultSet result = null;

	try {
		conn = getMySqlConnection();

		Statement sql2 = conn.createStatement();
		sql2.execute("SET group_concat_max_len = 10240");
		sql2.close();

		sql = conn
				.prepareStatement(
						"SELECT \n"
								+ " fam.modelFamilyID, \n"
								+ "	fam.crisisID, \n"
								+ "	col.code AS crisisCode, \n"
								+ "	col.name AS crisisName, \n"
								+ "	fam.nominalAttributeID, \n"
								+ "	attr.code AS nominalAttributeCode, \n"
								+ "	attr.name AS nominalAttributeName, \n"
								+ "	attr.description AS nominalAttributeDescription, \n"
								+ " mdl.modelID, \n"
								+ "	lbl.nominalLabelID,\n"
								+ "	lbl.nominalLabelCode,\n"
								+ "	lbl.name as nominalLabelName,\n"
								+ "	lbl.description as nominLabelDescription, \n"
								+ "	COUNT(DISTINCT dnl.documentID) AS labeledItemCount\n"
								+ "FROM model_family fam \n"
								+ "LEFT JOIN model mdl on mdl.modelFamilyID = fam.modelFamilyID \n"
								+ "JOIN collection col on col.id = fam.crisisID and col.classifier_enabled = 1 \n"
								+ "JOIN nominal_attribute attr ON attr.nominalAttributeID = fam.nominalAttributeID \n"
								+ "JOIN nominal_label lbl ON lbl.nominalAttributeID = fam.nominalAttributeID \n"
								+ "LEFT JOIN document doc ON doc.crisisID=fam.crisisID \n"
								+ "LEFT JOIN document_nominal_label dnl ON dnl.documentID=doc.documentID AND dnl.nominalLabelID=lbl.nominalLabelID \n"
								+ "WHERE fam.isActive AND (mdl.modelID IS NULL OR mdl.isCurrentModel) \n"
								+ "GROUP BY crisisID, nominalAttributeID, nominalLabelID ");
		result = sql.executeQuery();

		ModelFamilyEC family = null;
		NominalAttributeEC attribute = null;
		HashMap<ModelFamilyEC, Integer> familyLabelCount = new HashMap<>();
		while (result.next()) {
			if (family == null || family.getModelFamilyID() != result.getInt("modelFamilyID")) {

				//create attribute
				attribute = new NominalAttributeEC();
				attribute.setNominalAttributeID(result.getInt("nominalAttributeID"));
				attribute.setCode(result.getString("nominalAttributeCode"));
				attribute.setDescription(result.getString("nominalAttributeDescription"));
				attribute.setName(result.getString("nominalAttributeName"));

				//create model family
				family = new ModelFamilyEC();
				family.setCrisisID(result.getInt("crisisID"));
				int tmpModelID = result.getInt("modelID");
				if (!result.wasNull()) {
					family.setCurrentModelID(tmpModelID);
				}
				family.setIsActive(true);
				family.setModelFamilyID(result.getInt("modelFamilyID"));
				family.setNominalAttribute(attribute);

				familyLabelCount.put(family, 0);
				modelFamilies.add(family);
			}

			//create label
			NominalLabelEC label = new NominalLabelEC();
			label.setDescription(result.getString("nominLabelDescription"));
			label.setName(result.getString("nominalLabelName"));
			label.setNominalAttribute(attribute);
			label.setNominalLabelCode(result.getString("nominalLabelCode"));
			label.setNominalLabelID(result.getInt("nominalLabelID"));
			attribute.addNominalLabel(label);

			int count = familyLabelCount.get(family);
			familyLabelCount.put(family, count + result.getInt("labeledItemCount"));

		}

		//sum training sample counts per attribute
		for (Map.Entry<ModelFamilyEC, Integer> entry : familyLabelCount.entrySet()) {
			entry.getKey().setTrainingExampleCount(entry.getValue());
		}

	} catch (SQLException e) {
		logger.error("Exception when getting model state", e);
	} finally {
		close(result);
		close(sql);
		close(conn);
	}

	return modelFamilies;
}
 
Example 18
@Override
public void setGeopaparazziProjectViewerPreferencesMap( HashMap<String, String> prefsMap ) {
    Preferences preferences = Preferences.userRoot().node(PreferencesHandler.PREFS_NODE_NAME);
    String lastPath = prefsMap.get(LAST_GP_PROJECTS_PATH);
    preferences.put(LAST_GP_PROJECTS_PATH, lastPath);
}
 
Example 19
/**
 * Expand labels by a given factor
 * @param image  input label image
 * @param ratio  percentage of expansion (values between 0 and 100)
 * @return expanded image
 */
public static final ImageStack expandLabels(ImageStack image,
		float ratio) 
{
	// size of input image
	int sizeX = image.getWidth();
	int sizeY = image.getHeight();
	int sizeZ = image.getSize();
	
	// size of result image
	int sizeX2 = (int) Math.round(sizeX * (1. + ratio / 100));
	int sizeY2 = (int) Math.round(sizeY * (1. + ratio / 100));
	int sizeZ2 = (int) Math.round(sizeZ * (1. + ratio / 100));
	
	// allocate memory for result
	int bitDepth = image.getBitDepth();
	ImageStack result = ImageStack.create(sizeX2, sizeY2, sizeZ2, bitDepth);

	// compute centroids of labels
	int[] labels = LabelImages.findAllLabels(image);
	double[][] centroids = Centroid3D.centroids(image, labels);
	
	// compute shift associated to each label
	int nLabels = labels.length;
	int[][] shifts = new int[nLabels][3];
	for (int i = 0; i < nLabels; i++)
	{
		shifts[i][0] = (int) Math.floor(centroids[i][0] * ratio / 100);
		shifts[i][1] = (int) Math.floor(centroids[i][1] * ratio / 100);
		shifts[i][2] = (int) Math.floor(centroids[i][2] * ratio / 100);
	}
	
       // create associative array to know index of each label
	HashMap<Integer, Integer> labelIndices = new HashMap<Integer, Integer>();
       for (int i = 0; i < nLabels; i++) 
       {
       	labelIndices.put(labels[i], i);
       }

       for (int z = 0; z < sizeZ; z++)
       {
       	for (int y = 0; y < sizeY; y++)
       	{
       		for (int x = 0; x < sizeX; x++)
       		{
       			double label = image.getVoxel( x, y, z );
       			if ( Double.compare( label,  0 ) == 0 )
       				continue;

       			int index = labelIndices.get( (int) label );
       			int x2 = x + shifts[index][0];
       			int y2 = y + shifts[index][1];
       			int z2 = z + shifts[index][2];
       			result.setVoxel( x2, y2, z2, label );
       		}
       	}
       }

	return result;
}
 
Example 20
Source Project: TrakEM2   File: TMLHandler.java    License: GNU General Public License v3.0 4 votes vote down vote up
public void startElement(String namespace_URI, String local_name, String qualified_name, Attributes attributes) throws SAXException {
	if (null == loader) return;

	//Utils.log2("startElement: " + qualified_name);
	this.counter++;
	if (0 == counter % 100) { // davi-experimenting: don't talk so much when you have > 600,000 patches to load!
		Utils.showStatus("Loading " + counter, false);
	}
	try {
		// failsafe:
		qualified_name = qualified_name.toLowerCase();

		final HashMap<String,String> ht_attributes = new HashMap<String,String>();
		for (int i=attributes.getLength() -1; i>-1; i--) {
			ht_attributes.put(attributes.getQName(i).toLowerCase(), attributes.getValue(i));
		}
		// get the id, which whenever possible it's the id of the encapsulating Thing object. The encapsulated object id is the oid
		// The type is specified by the qualified_name
		Thing thing = null;
		if (0 == qualified_name.indexOf("t2_")) {
			if (qualified_name.equals("t2_display")) {
				if (open_displays) al_displays.add(ht_attributes); // store for later, until the layers exist
			} else {
				// a Layer, LayerSet or Displayable object
				thing = makeLayerThing(qualified_name, ht_attributes);
				if (null != thing) {
					if (null == root_lt && thing.getObject() instanceof LayerSet) {
						root_lt = (LayerThing)thing;
					}
				}
			}
		} else if (qualified_name.equals("project")) {
			if (null != this.root_pt) {
				Utils.log("WARNING: more than one project definitions.");
				return;
			}
			// Create the project
			this.project = new Project(Long.parseLong(ht_attributes.remove("id")), ht_attributes.remove("title"));
			this.project.setTempLoader(this.loader); // temp, but will be the same anyway
			this.project.parseXMLOptions(ht_attributes);
			this.project.addToDatabase(); // register id
			String title = ht_attributes.get("title");
			if (null != title) this.project.setTitle(title);
			// Add all unique TemplateThing types to the project
			for (Iterator<TemplateThing> it = root_tt.getUniqueTypes(new HashMap<String,TemplateThing>()).values().iterator(); it.hasNext(); ) {
				this.project.addUniqueType(it.next());
			}
			this.project.addUniqueType(this.project_tt);
			this.root_pt = new ProjectThing(this.project_tt, this.project, this.project);
			// Add a project pointer to all template things
			this.root_tt.addToDatabase(this.project);
			thing = root_pt;
		} else if (qualified_name.startsWith("ict_transform")||qualified_name.startsWith("iict_transform")) {
			makeCoordinateTransform(qualified_name, ht_attributes);
		} else if (!qualified_name.equals("trakem2")) {
			// Any abstract object
			thing = makeProjectThing(qualified_name, ht_attributes);
		}
		if (null != thing) {
			// get the previously open thing and add this new_thing to it as a child
			int size = al_open.size();
			if (size > 0) {
				Thing parent = al_open.get(size -1);
				parent.addChild(thing);
				//Utils.log2("Adding child " + thing + " to parent " + parent);
			}
			// add the new thing as open
			al_open.add(thing);
		}
	} catch (Exception e) {
		IJError.print(e);
		skip = true;
	}
}